MD05G1283500.v1.1

Human Cytomegalovirus UL139 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0010283
Physical Location & Seq
Forward (+)
41726714 .. 41728207
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1283500.v1.1.491

Sequence Viewer

Length: 642 bp
ATGGCGCTTTCCGCCGCGTTCCGGGAACGACTCGAACACATGGAGCATACCCGCAACCAGCGCCTCTCTCTTCTTCAGGCGGAGAAAGAAGCGCAAACGAACAAGTCTCAGGTGTTGGAGATGAAGCTCGCAAGCATGAGGGCCACGGAGCAGAGGTGCTTAGCGCTCGATCAAAAGATCGCATCGCAAAGCTTCAAGATCTGGGCACTCAGGTCCGAGATCGATCGCCTCGACGAGAAATATCAATCCGATTCGCATCGATTGAGGGTTTTGAAGAGTGAGGTGGAGGAGCTTGAGGAGCTGGAGAAGGAGAAGAAGAGATTCTATGGGTTGAAGGGATTTGAAATGGAGGAGTTCAAGCAAAATGTGGAGATATTTGCTTTGGAATGTCAAATGGAAGTTCAAATTTTGAAGAATGGCATCAATGAGATTCAATCGAGCTTTGTCAAATTCCAAGGGAGTGAGAGATGCACGAGTAATGGTGAGATAGCTGCAGCTGAGAAGAGGAAGTGTGAGCTTTTAGCTATGAAGGAGGAACTAGACAGAAAGTTGGCTTCTAATTACCAAACAAAAGCTCAATTGCAAAAGCAGTTTCAGGATTTTATCACTAAACACAAACAAGACACAAATTGCCAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCMV_UL139

Protein Analysis

214

Amino Acids

25.02

Weight (kDa)

6.92

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCMV_UL139 PF12507 22 - 141 2e-21 Human Cytomegalovirus UL139 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 4 cut(s) 12, 15, 52, 80
AcsI RAATTY 2 cut(s) 405, 449
AcuI CTGAAG 1 cut(s) 59
AfeI AGCGCT 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 8 cut(s) 196, 274, 334, 344, 358, 404, 412, 434
Alw26I GTCTC 1 cut(s) 111
Aor51HI AGCGCT 1 cut(s) 165
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 491, 494
ApoI RAATTY 2 cut(s) 405, 449
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 4 cut(s) 7, 63, 94, 166
AspS9I GGNCC 2 cut(s) 141, 213
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 494
AvaII GGWCC 1 cut(s) 213
BaeGI GKGCMC 1 cut(s) 208
BauI CACGAG 1 cut(s) 472
BbvI GCAGC 2 cut(s) 478, 506
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 539
BfmI CTRYAG 1 cut(s) 492
BfoI RGCGCY 3 cut(s) 8, 64, 167
BglII AGATCT 1 cut(s) 198
BisI GCNGC 3 cut(s) 15, 492, 495
BlpI GCTNAGC 1 cut(s) 160
BlsI GCNGC 3 cut(s) 16, 493, 496
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 141, 213
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 4 cut(s) 191, 265, 429, 458
BpmI CTGGAG 1 cut(s) 323
Bpu1102I GCTNAGC 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 23
Bsa29I ATCGAT 2 cut(s) 222, 259
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 144, 454
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse8I GATNNNNATC 1 cut(s) 255
BseCI ATCGAT 2 cut(s) 222, 259
BseDI CCNNGG 2 cut(s) 144, 454
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMII CTCAG 3 cut(s) 122, 223, 489
BseRI GAGGAG 3 cut(s) 302, 311, 365
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 2 cut(s) 478, 506
Bsh1236I CGCG 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 1 cut(s) 143
BshVI ATCGAT 2 cut(s) 222, 259
BsiEI CGRYCG 1 cut(s) 226
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 5 cut(s) 169, 177, 198, 219, 223
Bsp1720I GCTNAGC 1 cut(s) 160
BspACI CCGC 4 cut(s) 12, 15, 52, 80
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 3 cut(s) 121, 222, 490
BspDI ATCGAT 2 cut(s) 222, 259
BspFNI CGCG 1 cut(s) 17
BspMAI CTGCAG 1 cut(s) 496
BssECI CCNNGG 2 cut(s) 144, 454
BssMI GATC 5 cut(s) 169, 177, 198, 219, 223
BssSI CACGAG 1 cut(s) 472
BssT1I CCWWGG 1 cut(s) 454
Bst2BI CACGAG 1 cut(s) 472
Bst6I CTCTTC 4 cut(s) 75, 269, 311, 497
BstC8I GCNNGC 2 cut(s) 129, 133
BstDEI CTNAG 4 cut(s) 108, 160, 209, 498
BstDSI CCRYGG 1 cut(s) 144
BstFNI CGCG 1 cut(s) 17
BstH2I RGCGCY 3 cut(s) 8, 64, 167
BstHHI GCGC 4 cut(s) 7, 63, 94, 166
BstKTI GATC 5 cut(s) 172, 180, 201, 222, 226
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 5 cut(s) 169, 177, 198, 219, 223
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 3 cut(s) 11, 60, 298
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 492
BstSLI GKGCMC 1 cut(s) 208
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 478, 506
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
Bsu15I ATCGAT 2 cut(s) 222, 259
BsuRI GGCC 1 cut(s) 143
BsuTUI ATCGAT 2 cut(s) 222, 259
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 129, 133
CfoI GCGC 4 cut(s) 7, 63, 94, 166
Cfr13I GGNCC 2 cut(s) 141, 213
ClaI ATCGAT 2 cut(s) 222, 259
CviAII CATG 2 cut(s) 40, 136
DdeI CTNAG 4 cut(s) 108, 160, 209, 498
DpnI GATC 5 cut(s) 171, 179, 200, 221, 225
DpnII GATC 5 cut(s) 169, 177, 198, 219, 223
Eam1104I CTCTTC 4 cut(s) 75, 269, 311, 497
EarI CTCTTC 4 cut(s) 75, 269, 311, 497
EciI GGCGGA 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 213
Eco47III AGCGCT 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 2 cut(s) 43, 139
FaiI YATR 6 cut(s) 41, 48, 137, 327, 527, 640
FatI CATG 2 cut(s) 39, 135
FauI CCCGC 1 cut(s) 59
Fnu4HI GCNGC 3 cut(s) 15, 492, 495
Fsp4HI GCNGC 3 cut(s) 15, 492, 495
FspBI CTAG 1 cut(s) 539
GlaI GCGC 4 cut(s) 6, 62, 93, 165
GluI GCNGC 3 cut(s) 15, 492, 495
GsuI CTGGAG 1 cut(s) 323
HaeII RGCGCY 3 cut(s) 8, 64, 167
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 22
HhaI GCGC 4 cut(s) 7, 63, 94, 166
Hin1II CATG 2 cut(s) 43, 139
Hin6I GCGC 4 cut(s) 5, 61, 92, 164
HinP1I GCGC 4 cut(s) 5, 61, 92, 164
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 4 cut(s) 30, 251, 321, 430
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 494
Hpy188I TCNGA 2 cut(s) 217, 250
Hpy188III TCNNGA 2 cut(s) 196, 596
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 3 cut(s) 301, 328, 523
HpyCH4V TGCA 3 cut(s) 471, 494, 583
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 60, 298
HpyF3I CTNAG 4 cut(s) 108, 160, 209, 498
Hsp92II CATG 2 cut(s) 43, 139
HspAI GCGC 4 cut(s) 5, 61, 92, 164
Kzo9I GATC 5 cut(s) 169, 177, 198, 219, 223
LmnI GCTCC 4 cut(s) 43, 148, 289, 298
LpnPI CCDG 8 cut(s) 35, 62, 71, 95, 187, 196, 287, 581
Lsp1109I GCAGC 2 cut(s) 478, 506
LweI GCATC 4 cut(s) 191, 265, 429, 458
MaeI CTAG 1 cut(s) 539
MalI GATC 5 cut(s) 171, 179, 200, 221, 225
MboI GATC 5 cut(s) 169, 177, 198, 219, 223
MboII GAAGA 7 cut(s) 62, 65, 286, 325, 328, 424, 514
MfeI CAATTG 1 cut(s) 578
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 6 cut(s) 405, 449, 559, 578, 628, 635
MlyI GAGTC 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 96
MroXI GAANNNNTTC 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 23
MunI CAATTG 1 cut(s) 578
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 11, 60, 298
NciI CCSGG 1 cut(s) 23
NdeII GATC 5 cut(s) 169, 177, 198, 219, 223
NlaIII CATG 2 cut(s) 43, 139
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 3 cut(s) 251, 321, 430
PfoI TCCNGGA 1 cut(s) 21
PkrI GCNGC 3 cut(s) 16, 493, 496
Ple19I CGATCG 1 cut(s) 226
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PspPI GGNCC 2 cut(s) 141, 213
PstI CTGCAG 1 cut(s) 496
PsuI RGATCY 1 cut(s) 198
PvuI CGATCG 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 497
SatI GCNGC 3 cut(s) 15, 492, 495
Sau3AI GATC 5 cut(s) 169, 177, 198, 219, 223
Sau96I GGNCC 2 cut(s) 141, 213
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 208
SfaNI GCATC 4 cut(s) 191, 265, 429, 458
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 6 cut(s) 405, 449, 559, 578, 628, 635
SsiI CCGC 4 cut(s) 12, 15, 52, 80
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 454
TaqI TCGA 6 cut(s) 33, 168, 222, 231, 259, 437
TasI AATT 6 cut(s) 405, 449, 559, 578, 628, 635
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 3 cut(s) 251, 321, 430
TseI GCWGC 2 cut(s) 491, 494
TspDTI ATGAA 2 cut(s) 137, 542
TspGWI ACGGA 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 213
XapI RAATTY 2 cut(s) 405, 449
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.