Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010235

Physical Location & Seq

Genomic Coordinates Forward (+)

14708243 .. 14710267

Gene Structure 2025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCGGCATCATCATCTCATCTCTTCGCACTCCCTTCGCCTGCTTCTCCGTTTCTATCTGCACCAAACCGGAATCGAGTTCGTGTTCTTGCGAAATCATGCCCGGAGAATCAGAGCTTCGACTCCAACGATTCGGATTCTTCCTCAGAGACTACCCACAAAGCCCAGGGAGATCAGAAATCAGTGTCACGGAGACAGTGGATGACGGCATGTGTGTGCGCATCTGCAGCTTTAATTAGCAATTCTTATACCTTTGTCTCTGTACAAAGCGCAGCCGCTTTAGACAAGAAACCAGGAGGTTCATGTCGTAACTGCCAGGGCAGTGGTGCTGTTCTTTGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTCAACCGAAAACGTGCGAAAGATGTATATGAGTTTACGGAATGTCCAAACTGTTACGGTCGAGGTAAGCTTGTTTGTCCGGTCTGTTTAGGTACAGGTTTACCAAACAACAAAGGCCTTCTTAGAAGGCCTGGTGCTCGTGAGCTACTCGAAAAGATGTACAATGGTCGGCTTCTTCCTGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009553 GO:0009561 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0015036 GO:0015979 GO:0016020 GO:0016043 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047134 GO:0048229 GO:0048564 GO:0048856 GO:0055035 GO:0055114 GO:0061024 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

19.94

Weight (kDa)

9.3

Isoelectric Point (pI)

65.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34860 AT2G34860
fragaria_vesca	FvH4_3g44571 FvH4_3g44681
malus_domestica	MD03G1011600.v1.1 MD11G1014500.v1.1
prunus_persica	Prupe.6G012000_v2.0.a1 Prupe.6G012000_v2.0.a1
pyrus_communis	pycom03g01050 pycom11g00980
rosa_chinensis	RchiOBHm_Chr5g0081351
rosa_laevigata	RLG00000036926
rosa_multiflora	Rmu_co8192032.1_g000001 Rmu_ssc0000432.1_g000028
rosa_roxburghii	Rroxscaffold_1G00002190
rosa_rugosa	Rorug05G0476000
rosa_samantha	Rh5AG527300 Rh5BG551500 Rh5CG574300 Rh5DG561400
rosa_wichuraiana	Rw5G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	220
AciI	CCGC	2 cut(s)	5, 276
AfaI	GTAC	4 cut(s)	264, 355, 466, 533
AjnI	CCWGG	4 cut(s)	165, 292, 315, 502
AluBI	AGCT	5 cut(s)	117, 230, 371, 442, 517
AluI	AGCT	5 cut(s)	117, 230, 371, 442, 517
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	3 cut(s)	143, 187, 262
AoxI	GGCC	2 cut(s)	487, 500
ApeKI	GCWGC	2 cut(s)	227, 272
AspLEI	GCGC	2 cut(s)	221, 272
AsuC2I	CCSGG	1 cut(s)	104
BauI	CACGAG	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	2 cut(s)	239, 284
BceAI	ACGGC	1 cut(s)	222
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BciT130I	CCWGG	4 cut(s)	167, 294, 317, 504
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	3 cut(s)	143, 187, 262
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	4 cut(s)	6, 228, 273, 276
BlsI	GCNGC	4 cut(s)	7, 229, 274, 277
Bme1390I	CCNGG	5 cut(s)	104, 167, 294, 317, 504
BmrFI	CCNGG	5 cut(s)	104, 167, 294, 317, 504
BmsI	GCATC	2 cut(s)	17, 230
BpuMI	CCSGG	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	165, 166, 316
BsaWI	WCCGGW	2 cut(s)	69, 451
BseBI	CCWGG	4 cut(s)	167, 294, 317, 504
BseDI	CCNNGG	3 cut(s)	165, 166, 316
BseGI	GGATG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	159
BseXI	GCAGC	2 cut(s)	239, 284
BsgI	GTGCAG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	433
BshFI	GGCC	2 cut(s)	489, 502
BsiEI	CGRYCG	1 cut(s)	433
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	3 cut(s)	70, 104, 452
BsmAI	GTCTC	3 cut(s)	143, 187, 262
BsnI	GGCC	2 cut(s)	489, 502
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp1407I	TGTACA	2 cut(s)	262, 531
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	2 cut(s)	5, 276
BspANI	GGCC	2 cut(s)	489, 502
BspCNI	CTCAG	1 cut(s)	158
BspHI	TCATGA	1 cut(s)	557
BspMAI	CTGCAG	1 cut(s)	229
BsrGI	TGTACA	2 cut(s)	262, 531
BssECI	CCNNGG	3 cut(s)	165, 166, 316
BssMI	GATC	1 cut(s)	172
BssSI	CACGAG	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	510
Bst2UI	CCWGG	4 cut(s)	167, 294, 317, 504
Bst4CI	ACNGT	3 cut(s)	198, 425, 431
Bst6I	CTCTTC	1 cut(s)	29
BstAUI	TGTACA	2 cut(s)	262, 531
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	145, 494
BstF5I	GGATG	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	221, 272
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	3 cut(s)	143, 187, 262
BstMBI	GATC	1 cut(s)	172
BstMCI	CGRYCG	1 cut(s)	433
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	4 cut(s)	167, 294, 317, 504
BstNSI	RCATGY	1 cut(s)	213
BstSCI	CCNGG	5 cut(s)	102, 165, 292, 315, 502
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	239, 284
BstXI	CCANNNNNNTGG	1 cut(s)	323
BsuRI	GGCC	2 cut(s)	489, 502
BtsCI	GGATG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	3 cut(s)	189, 203, 328
Cac8I	GCNNGC	1 cut(s)	42
CciI	TCATGA	1 cut(s)	557
CfoI	GCGC	2 cut(s)	221, 272
Csp6I	GTAC	4 cut(s)	263, 354, 465, 532
CviAII	CATG	4 cut(s)	99, 210, 303, 558
CviQI	GTAC	4 cut(s)	263, 354, 465, 532
DdeI	CTNAG	2 cut(s)	145, 494
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco147I	AGGCCT	2 cut(s)	489, 502
EcoRII	CCWGG	4 cut(s)	165, 292, 315, 502
FaeI	CATG	4 cut(s)	102, 213, 306, 561
FaiI	YATR	8 cut(s)	100, 211, 249, 304, 344, 400, 402, 559
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FatI	CATG	4 cut(s)	98, 209, 302, 557
Fnu4HI	GCNGC	4 cut(s)	6, 228, 273, 276
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	4 cut(s)	6, 228, 273, 276
FspAI	RTGCGCAY	1 cut(s)	220
FspI	TGCGCA	1 cut(s)	220
GlaI	GCGC	2 cut(s)	220, 271
GluI	GCNGC	4 cut(s)	6, 228, 273, 276
HaeIII	GGCC	2 cut(s)	489, 502
HapII	CCGG	3 cut(s)	70, 104, 452
HhaI	GCGC	2 cut(s)	221, 272
Hin1II	CATG	4 cut(s)	102, 213, 306, 561
Hin6I	GCGC	2 cut(s)	219, 270
HinP1I	GCGC	2 cut(s)	219, 270
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	6 cut(s)	73, 109, 122, 131, 137, 554
HpaII	CCGG	3 cut(s)	70, 104, 452
Hpy166II	GTNNAC	2 cut(s)	408, 473
Hpy188I	TCNGA	4 cut(s)	114, 136, 148, 177
Hpy188III	TCNNGA	3 cut(s)	512, 551, 558
Hpy8I	GTNNAC	2 cut(s)	408, 473
HpyAV	CCTTC	3 cut(s)	45, 492, 500
HpyCH4III	ACNGT	3 cut(s)	198, 425, 431
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	2 cut(s)	62, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	145, 494
HpySE526I	ACGT	1 cut(s)	385
Hsp92II	CATG	4 cut(s)	102, 213, 306, 561
HspAI	GCGC	2 cut(s)	219, 270
Kzo9I	GATC	1 cut(s)	172
Lsp1109I	GCAGC	2 cut(s)	239, 284
LweI	GCATC	2 cut(s)	17, 230
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	3 cut(s)	186, 308, 425
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	3 cut(s)	16, 132, 539
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	2 cut(s)	234, 241
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	3 cut(s)	154, 290, 428
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	214
MspI	CCGG	3 cut(s)	70, 104, 452
MspR9I	CCNGG	5 cut(s)	104, 167, 294, 317, 504
MvaI	CCWGG	4 cut(s)	167, 294, 317, 504
MwoI	GCNNNNNNNGC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	4 cut(s)	102, 213, 306, 561
NmuCI	GTSAC	1 cut(s)	186
NsbI	TGCGCA	1 cut(s)	220
NspI	RCATGY	1 cut(s)	213
PagI	TCATGA	1 cut(s)	557
PasI	CCCWGGG	1 cut(s)	166
PceI	AGGCCT	2 cut(s)	489, 502
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	5 cut(s)	73, 109, 131, 137, 554
PkrI	GCNGC	4 cut(s)	7, 229, 274, 277
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp6I	CCWGG	4 cut(s)	165, 292, 315, 502
PspGI	CCWGG	4 cut(s)	165, 292, 315, 502
PstI	CTGCAG	1 cut(s)	229
RsaI	GTAC	4 cut(s)	264, 355, 466, 533
RsaNI	GTAC	4 cut(s)	263, 354, 465, 532
RseI	CAYNNNNRTG	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	4 cut(s)	6, 228, 273, 276
Sau3AI	GATC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	5 cut(s)	104, 167, 294, 317, 504
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	2 cut(s)	17, 230
SfcI	CTRYAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	214
Sse9I	AATT	2 cut(s)	234, 241
SseBI	AGGCCT	2 cut(s)	489, 502
SsiI	CCGC	2 cut(s)	5, 276
StuI	AGGCCT	2 cut(s)	489, 502
StyD4I	CCNGG	5 cut(s)	102, 165, 292, 315, 502
TaaI	ACNGT	3 cut(s)	198, 425, 431
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	4 cut(s)	76, 120, 433, 522
TasI	AATT	2 cut(s)	234, 241
TatI	WGTACW	2 cut(s)	262, 531
TauI	GCSGC	2 cut(s)	8, 278
TfiI	GAWTC	5 cut(s)	73, 109, 131, 137, 554
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	3 cut(s)	189, 203, 328
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	2 cut(s)	227, 272
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	291, 546
TspGWI	ACGGA	3 cut(s)	39, 205, 425
TspRI	CASTG	3 cut(s)	189, 203, 328
XceI	RCATGY	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.