photosystem I assembly
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G34860 AT2G34860 |
| fragaria_vesca | FvH4_3g44571 FvH4_3g44681 |
| malus_domestica | MD03G1011600.v1.1 MD11G1014500.v1.1 |
| prunus_persica | Prupe.6G012000_v2.0.a1 Prupe.6G012000_v2.0.a1 |
| pyrus_communis | pycom03g01050 pycom11g00980 |
| rosa_chinensis | RchiOBHm_Chr5g0081351 |
| rosa_laevigata | RLG00000036926 |
| rosa_multiflora | Rmu_co8192032.1_g000001 Rmu_ssc0000432.1_g000028 |
| rosa_roxburghii | Rroxscaffold_1G00002190 |
| rosa_rugosa | Rorug05G0476000 |
| rosa_samantha | Rh5AG527300 Rh5BG551500 Rh5CG574300 Rh5DG561400 |
| rosa_wichuraiana | Rw5G049040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 387 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 559 |
| AccII | CGCG | 1 cut(s) | 189 |
| AciI | CCGC | 2 cut(s) | 47, 312 |
| AcsI | RAATTY | 1 cut(s) | 4 |
| AfaI | GTAC | 3 cut(s) | 439, 485, 521 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 390, 559 |
| AflIII | ACRYGT | 2 cut(s) | 296, 480 |
| AgsI | TTSAA | 4 cut(s) | 21, 166, 273, 309 |
| AjiI | CACGTC | 1 cut(s) | 481 |
| AjnI | CCWGG | 1 cut(s) | 223 |
| AluBI | AGCT | 1 cut(s) | 455 |
| AluI | AGCT | 1 cut(s) | 455 |
| Alw26I | GTCTC | 1 cut(s) | 296 |
| ApeKI | GCWGC | 2 cut(s) | 216, 314 |
| ApoI | RAATTY | 1 cut(s) | 4 |
| AspLEI | GCGC | 2 cut(s) | 191, 413 |
| AsuHPI | GGTGA | 1 cut(s) | 542 |
| AsuII | TTCGAA | 1 cut(s) | 170 |
| BbvI | GCAGC | 2 cut(s) | 228, 301 |
| BccI | CCATC | 5 cut(s) | 85, 131, 163, 259, 362 |
| BciT130I | CCWGG | 1 cut(s) | 225 |
| BcoDI | GTCTC | 1 cut(s) | 296 |
| BfoI | RGCGCY | 1 cut(s) | 414 |
| BisI | GCNGC | 2 cut(s) | 217, 315 |
| BlsI | GCNGC | 2 cut(s) | 218, 316 |
| Bme1390I | CCNGG | 1 cut(s) | 225 |
| BmgBI | CACGTC | 1 cut(s) | 481 |
| BmiI | GGNNCC | 2 cut(s) | 261, 564 |
| BmrFI | CCNGG | 1 cut(s) | 225 |
| BmrI | ACTGGG | 1 cut(s) | 378 |
| BmuI | ACTGGG | 1 cut(s) | 378 |
| Bpu14I | TTCGAA | 1 cut(s) | 170 |
| BpuEI | CTTGAG | 2 cut(s) | 224, 249 |
| BsaJI | CCNNGG | 1 cut(s) | 224 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 205, 235, 331, 361 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 390, 559 |
| Bse1I | ACTGG | 2 cut(s) | 369, 384 |
| BseBI | CCWGG | 1 cut(s) | 225 |
| BseDI | CCNNGG | 1 cut(s) | 224 |
| BseGI | GGATG | 4 cut(s) | 93, 123, 155, 373 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 390, 559 |
| BseMII | CTCAG | 1 cut(s) | 132 |
| BseNI | ACTGG | 2 cut(s) | 369, 384 |
| BseXI | GCAGC | 2 cut(s) | 228, 301 |
| Bsh1236I | CGCG | 1 cut(s) | 189 |
| BslFI | GGGAC | 2 cut(s) | 29, 242 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 390, 559 |
| BsmAI | GTCTC | 1 cut(s) | 296 |
| BsmFI | GGGAC | 2 cut(s) | 29, 242 |
| Bsp119I | TTCGAA | 1 cut(s) | 170 |
| BspACI | CCGC | 2 cut(s) | 47, 312 |
| BspCNI | CTCAG | 1 cut(s) | 131 |
| BspFNI | CGCG | 1 cut(s) | 189 |
| BspLI | GGNNCC | 2 cut(s) | 261, 564 |
| BspT104I | TTCGAA | 1 cut(s) | 170 |
| BsrI | ACTGG | 2 cut(s) | 369, 384 |
| BssECI | CCNNGG | 1 cut(s) | 224 |
| Bst2UI | CCWGG | 1 cut(s) | 225 |
| Bst4CI | ACNGT | 2 cut(s) | 509, 515 |
| BstBI | TTCGAA | 1 cut(s) | 170 |
| BstDEI | CTNAG | 2 cut(s) | 50, 118 |
| BstF5I | GGATG | 4 cut(s) | 93, 123, 155, 373 |
| BstFNI | CGCG | 1 cut(s) | 189 |
| BstH2I | RGCGCY | 1 cut(s) | 414 |
| BstHHI | GCGC | 2 cut(s) | 191, 413 |
| BstMAI | GTCTC | 1 cut(s) | 296 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 353 |
| BstNI | CCWGG | 1 cut(s) | 225 |
| BstNSI | RCATGY | 1 cut(s) | 300 |
| BstSCI | CCNGG | 1 cut(s) | 223 |
| BstUI | CGCG | 1 cut(s) | 189 |
| BstV1I | GCAGC | 2 cut(s) | 228, 301 |
| BtrI | CACGTC | 1 cut(s) | 481 |
| BtsCI | GGATG | 4 cut(s) | 93, 123, 155, 373 |
| BtsIMutI | CAGTG | 2 cut(s) | 362, 527 |
| CfoI | GCGC | 2 cut(s) | 191, 413 |
| CseI | GACGC | 1 cut(s) | 239 |
| Csp6I | GTAC | 3 cut(s) | 438, 484, 520 |
| CviAII | CATG | 3 cut(s) | 30, 297, 567 |
| CviJI | RGCY | 4 cut(s) | 95, 122, 455, 473 |
| CviKI_1 | RGCY | 4 cut(s) | 95, 122, 455, 473 |
| CviQI | GTAC | 3 cut(s) | 438, 484, 520 |
| DdeI | CTNAG | 2 cut(s) | 50, 118 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 387 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 387 |
| EcoRII | CCWGG | 1 cut(s) | 223 |
| FaeI | CATG | 3 cut(s) | 33, 300, 570 |
| FaqI | GGGAC | 2 cut(s) | 29, 242 |
| FatI | CATG | 3 cut(s) | 29, 296, 566 |
| FauI | CCCGC | 1 cut(s) | 54 |
| Fnu4HI | GCNGC | 2 cut(s) | 217, 315 |
| FokI | GGATG | 4 cut(s) | 100, 110, 142, 380 |
| Fsp4HI | GCNGC | 2 cut(s) | 217, 315 |
| GlaI | GCGC | 2 cut(s) | 190, 412 |
| GluI | GCNGC | 2 cut(s) | 217, 315 |
| HaeII | RGCGCY | 1 cut(s) | 414 |
| HgaI | GACGC | 1 cut(s) | 239 |
| HhaI | GCGC | 2 cut(s) | 191, 413 |
| Hin1II | CATG | 3 cut(s) | 33, 300, 570 |
| Hin6I | GCGC | 2 cut(s) | 189, 411 |
| HinP1I | GCGC | 2 cut(s) | 189, 411 |
| HinfI | GANTC | 1 cut(s) | 199 |
| HphI | GGTGA | 1 cut(s) | 542 |
| Hpy166II | GTNNAC | 2 cut(s) | 484, 492 |
| Hpy188I | TCNGA | 1 cut(s) | 393 |
| Hpy188III | TCNNGA | 1 cut(s) | 203 |
| Hpy8I | GTNNAC | 2 cut(s) | 484, 492 |
| HpyCH4III | ACNGT | 2 cut(s) | 509, 515 |
| HpyCH4IV | ACGT | 1 cut(s) | 480 |
| HpyCH4V | TGCA | 2 cut(s) | 335, 362 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 353 |
| HpyF3I | CTNAG | 2 cut(s) | 50, 118 |
| HpySE526I | ACGT | 1 cut(s) | 480 |
| Hsp92II | CATG | 3 cut(s) | 33, 300, 570 |
| HspAI | GCGC | 2 cut(s) | 189, 411 |
| LmnI | GCTCC | 2 cut(s) | 213, 352 |
| LpnPI | CCDG | 5 cut(s) | 210, 237, 350, 397, 426 |
| Lsp1109I | GCAGC | 2 cut(s) | 228, 301 |
| MaeII | ACGT | 1 cut(s) | 480 |
| MaeIII | GTNAC | 2 cut(s) | 509, 525 |
| MboII | GAAGA | 3 cut(s) | 90, 93, 96 |
| MluCI | AATT | 5 cut(s) | 4, 21, 166, 328, 394 |
| MmeI | TCCRAC | 1 cut(s) | 371 |
| MnlI | CCTC | 6 cut(s) | 78, 118, 146, 157, 162, 273 |
| MslI | CAYNNNNRTG | 2 cut(s) | 34, 301 |
| MspA1I | CMGCKG | 1 cut(s) | 314 |
| MspR9I | CCNGG | 1 cut(s) | 225 |
| MvaI | CCWGG | 1 cut(s) | 225 |
| MvnI | CGCG | 1 cut(s) | 189 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 353 |
| NlaIII | CATG | 3 cut(s) | 33, 300, 570 |
| NlaIV | GGNNCC | 2 cut(s) | 261, 564 |
| NmeAIII | GCCGAG | 1 cut(s) | 259 |
| NmuCI | GTSAC | 1 cut(s) | 525 |
| NspI | RCATGY | 1 cut(s) | 300 |
| NspV | TTCGAA | 1 cut(s) | 170 |
| PciI | ACATGT | 1 cut(s) | 296 |
| PfeI | GAWTC | 1 cut(s) | 199 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 559 |
| PkrI | GCNGC | 2 cut(s) | 218, 316 |
| PscI | ACATGT | 1 cut(s) | 296 |
| Psp6I | CCWGG | 1 cut(s) | 223 |
| PspGI | CCWGG | 1 cut(s) | 223 |
| PspN4I | GGNNCC | 2 cut(s) | 261, 564 |
| RsaI | GTAC | 3 cut(s) | 439, 485, 521 |
| RsaNI | GTAC | 3 cut(s) | 438, 484, 520 |
| RseI | CAYNNNNRTG | 2 cut(s) | 34, 301 |
| SatI | GCNGC | 2 cut(s) | 217, 315 |
| ScrFI | CCNGG | 1 cut(s) | 225 |
| SetI | ASST | 3 cut(s) | 265, 457, 483 |
| SfuI | TTCGAA | 1 cut(s) | 170 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 34, 301 |
| SmlI | CTYRAG | 2 cut(s) | 203, 264 |
| SmoI | CTYRAG | 2 cut(s) | 203, 264 |
| Sse9I | AATT | 5 cut(s) | 4, 21, 166, 328, 394 |
| SsiI | CCGC | 2 cut(s) | 47, 312 |
| StyD4I | CCNGG | 1 cut(s) | 223 |
| TaaI | ACNGT | 2 cut(s) | 509, 515 |
| TaiI | ACGT | 1 cut(s) | 483 |
| TaqI | TCGA | 1 cut(s) | 170 |
| TasI | AATT | 5 cut(s) | 4, 21, 166, 328, 394 |
| TatI | WGTACW | 1 cut(s) | 519 |
| TfiI | GAWTC | 1 cut(s) | 199 |
| TscAI | CASTG | 2 cut(s) | 369, 534 |
| TseFI | GTSAC | 1 cut(s) | 525 |
| TseI | GCWGC | 2 cut(s) | 216, 314 |
| Tsp45I | GTSAC | 1 cut(s) | 525 |
| TspDTI | ATGAA | 2 cut(s) | 17, 526 |
| TspRI | CASTG | 2 cut(s) | 369, 534 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 559 |
| XapI | RAATTY | 1 cut(s) | 4 |
| XceI | RCATGY | 1 cut(s) | 300 |