photosystem I assembly
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G34860 AT2G34860 |
| fragaria_vesca | FvH4_3g44571 FvH4_3g44681 |
| malus_domestica | MD03G1011600.v1.1 MD11G1014500.v1.1 |
| prunus_persica | Prupe.6G012000_v2.0.a1 Prupe.6G012000_v2.0.a1 |
| pyrus_communis | pycom03g01050 pycom11g00980 |
| rosa_chinensis | RchiOBHm_Chr5g0081351 |
| rosa_laevigata | RLG00000036926 |
| rosa_multiflora | Rmu_co8192032.1_g000001 Rmu_ssc0000432.1_g000028 |
| rosa_roxburghii | Rroxscaffold_1G00002190 |
| rosa_rugosa | Rorug05G0476000 |
| rosa_samantha | Rh5AG527300 Rh5BG551500 Rh5CG574300 Rh5DG561400 |
| rosa_wichuraiana | Rw5G049040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 10 |
| AcsI | RAATTY | 1 cut(s) | 292 |
| AfaI | GTAC | 3 cut(s) | 94, 213, 272 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 30 |
| AgeI | ACCGGT | 1 cut(s) | 30 |
| AgsI | TTSAA | 1 cut(s) | 28 |
| AjnI | CCWGG | 2 cut(s) | 37, 73 |
| AluBI | AGCT | 2 cut(s) | 128, 256 |
| AluI | AGCT | 2 cut(s) | 128, 256 |
| AlwI | GGATC | 1 cut(s) | 10 |
| AoxI | GGCC | 1 cut(s) | 239 |
| ApeKI | GCWGC | 1 cut(s) | 253 |
| ApoI | RAATTY | 1 cut(s) | 292 |
| AsiGI | ACCGGT | 1 cut(s) | 30 |
| AsuHPI | GGTGA | 1 cut(s) | 89 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 195, 228 |
| BbvI | GCAGC | 1 cut(s) | 265 |
| BciT130I | CCWGG | 2 cut(s) | 39, 75 |
| BfaI | CTAG | 2 cut(s) | 8, 284 |
| BglII | AGATCT | 1 cut(s) | 226 |
| BisI | GCNGC | 1 cut(s) | 254 |
| BlsI | GCNGC | 1 cut(s) | 255 |
| Bme1390I | CCNGG | 2 cut(s) | 39, 75 |
| BmrFI | CCNGG | 2 cut(s) | 39, 75 |
| BmsI | GCATC | 1 cut(s) | 235 |
| BpuEI | CTTGAG | 1 cut(s) | 281 |
| BsaWI | WCCGGW | 1 cut(s) | 30 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 30 |
| Bse118I | RCCGGY | 1 cut(s) | 30 |
| Bse1I | ACTGG | 1 cut(s) | 211 |
| BseBI | CCWGG | 2 cut(s) | 39, 75 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 30 |
| BseMII | CTCAG | 1 cut(s) | 247 |
| BseNI | ACTGG | 1 cut(s) | 211 |
| BseXI | GCAGC | 1 cut(s) | 265 |
| BshFI | GGCC | 1 cut(s) | 241 |
| BshTI | ACCGGT | 1 cut(s) | 30 |
| BsiSI | CCGG | 1 cut(s) | 31 |
| BslFI | GGGAC | 1 cut(s) | 217 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 30 |
| BsmFI | GGGAC | 1 cut(s) | 217 |
| BsnI | GGCC | 1 cut(s) | 241 |
| Bsp1407I | TGTACA | 1 cut(s) | 270 |
| Bsp143I | GATC | 2 cut(s) | 15, 226 |
| BspANI | GGCC | 1 cut(s) | 241 |
| BspCNI | CTCAG | 1 cut(s) | 246 |
| BspPI | GGATC | 1 cut(s) | 10 |
| BsrFI | RCCGGY | 1 cut(s) | 30 |
| BsrGI | TGTACA | 1 cut(s) | 270 |
| BsrI | ACTGG | 1 cut(s) | 211 |
| BssAI | RCCGGY | 1 cut(s) | 30 |
| BssMI | GATC | 2 cut(s) | 15, 226 |
| Bst2UI | CCWGG | 2 cut(s) | 39, 75 |
| BstAUI | TGTACA | 1 cut(s) | 270 |
| BstDEI | CTNAG | 1 cut(s) | 233 |
| BstKTI | GATC | 2 cut(s) | 18, 229 |
| BstMBI | GATC | 2 cut(s) | 15, 226 |
| BstNI | CCWGG | 2 cut(s) | 39, 75 |
| BstSCI | CCNGG | 2 cut(s) | 37, 73 |
| BstV1I | GCAGC | 1 cut(s) | 265 |
| BstX2I | RGATCY | 1 cut(s) | 226 |
| BstYI | RGATCY | 1 cut(s) | 226 |
| BsuRI | GGCC | 1 cut(s) | 241 |
| Cfr10I | RCCGGY | 1 cut(s) | 30 |
| Csp6I | GTAC | 3 cut(s) | 93, 212, 271 |
| CspAI | ACCGGT | 1 cut(s) | 30 |
| CviJI | RGCY | 4 cut(s) | 128, 241, 256, 283 |
| CviKI_1 | RGCY | 4 cut(s) | 128, 241, 256, 283 |
| CviQI | GTAC | 3 cut(s) | 93, 212, 271 |
| DdeI | CTNAG | 1 cut(s) | 233 |
| DpnI | GATC | 2 cut(s) | 17, 228 |
| DpnII | GATC | 2 cut(s) | 15, 226 |
| Eco147I | AGGCCT | 1 cut(s) | 241 |
| EcoRII | CCWGG | 2 cut(s) | 37, 73 |
| FaiI | YATR | 5 cut(s) | 66, 83, 141, 168, 196 |
| FaqI | GGGAC | 1 cut(s) | 217 |
| Fnu4HI | GCNGC | 1 cut(s) | 254 |
| Fsp4HI | GCNGC | 1 cut(s) | 254 |
| FspBI | CTAG | 2 cut(s) | 8, 284 |
| GluI | GCNGC | 1 cut(s) | 254 |
| HaeIII | GGCC | 1 cut(s) | 241 |
| HapII | CCGG | 1 cut(s) | 31 |
| HpaII | CCGG | 1 cut(s) | 31 |
| HphI | GGTGA | 1 cut(s) | 89 |
| Hpy166II | GTNNAC | 2 cut(s) | 147, 212 |
| Hpy188III | TCNNGA | 1 cut(s) | 235 |
| Hpy8I | GTNNAC | 2 cut(s) | 147, 212 |
| HpyAV | CCTTC | 1 cut(s) | 34 |
| HpyCH4V | TGCA | 1 cut(s) | 248 |
| HpyF3I | CTNAG | 1 cut(s) | 233 |
| Kzo9I | GATC | 2 cut(s) | 15, 226 |
| LpnPI | CCDG | 9 cut(s) | 24, 33, 44, 51, 60, 87, 192, 220, 255 |
| Lsp1109I | GCAGC | 1 cut(s) | 265 |
| LweI | GCATC | 1 cut(s) | 235 |
| MaeI | CTAG | 2 cut(s) | 8, 284 |
| MalI | GATC | 2 cut(s) | 17, 228 |
| MboI | GATC | 2 cut(s) | 15, 226 |
| MboII | GAAGA | 3 cut(s) | 44, 221, 277 |
| MflI | RGATCY | 1 cut(s) | 226 |
| MluCI | AATT | 2 cut(s) | 160, 292 |
| MnlI | CCTC | 1 cut(s) | 231 |
| MseI | TTAA | 1 cut(s) | 298 |
| MspI | CCGG | 1 cut(s) | 31 |
| MspR9I | CCNGG | 2 cut(s) | 39, 75 |
| MvaI | CCWGG | 2 cut(s) | 39, 75 |
| NdeII | GATC | 2 cut(s) | 15, 226 |
| PceI | AGGCCT | 1 cut(s) | 241 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 189 |
| PinAI | ACCGGT | 1 cut(s) | 30 |
| PkrI | GCNGC | 1 cut(s) | 255 |
| Psp6I | CCWGG | 2 cut(s) | 37, 73 |
| PspGI | CCWGG | 2 cut(s) | 37, 73 |
| PsuI | RGATCY | 1 cut(s) | 226 |
| RsaI | GTAC | 3 cut(s) | 94, 213, 272 |
| RsaNI | GTAC | 3 cut(s) | 93, 212, 271 |
| SaqAI | TTAA | 1 cut(s) | 298 |
| SatI | GCNGC | 1 cut(s) | 254 |
| Sau3AI | GATC | 2 cut(s) | 15, 226 |
| ScrFI | CCNGG | 2 cut(s) | 39, 75 |
| SetI | ASST | 2 cut(s) | 130, 258 |
| SfaNI | GCATC | 1 cut(s) | 235 |
| SmlI | CTYRAG | 1 cut(s) | 260 |
| SmoI | CTYRAG | 1 cut(s) | 260 |
| Sse9I | AATT | 2 cut(s) | 160, 292 |
| SseBI | AGGCCT | 1 cut(s) | 241 |
| SspMI | CTAG | 2 cut(s) | 8, 284 |
| StuI | AGGCCT | 1 cut(s) | 241 |
| StyD4I | CCNGG | 2 cut(s) | 37, 73 |
| TasI | AATT | 2 cut(s) | 160, 292 |
| TatI | WGTACW | 1 cut(s) | 270 |
| Tru1I | TTAA | 1 cut(s) | 298 |
| Tru9I | TTAA | 1 cut(s) | 298 |
| TseI | GCWGC | 1 cut(s) | 253 |
| TspDTI | ATGAA | 1 cut(s) | 44 |
| XapI | RAATTY | 1 cut(s) | 292 |
| XspI | CTAG | 2 cut(s) | 8, 284 |