Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010235

Physical Location & Seq

Genomic Coordinates Forward (+)

895625 .. 898323

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1011600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATGGCTTCTTCTTCTTCCTCTCATCTCTCAGCCATCCCCCTACGCCTCTCCAAATCCTCCCATCCATCCCACTTCAATTCGAAGTCAGTTGGGTTTCATGCAAGAGCGAATCTTGAGAATGAGAGCAGCAGTCCAGGGGACGCAGAAAACTCATCTAAACATTCAAAGGAACCTCAAGTTTCAATCTCTCGGCGATTGTGTCTCACATGTCTATGTTCAACCGCTGCTTTGATAAGCAATTCTGCAACCACTTCTGCTCCAAAGGCACTTGCACTGGATGGAAACGACAGACCTGGTTGCCGGAATTGTGGGGGAAGTGGCGCTGTGCTTTGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTCAACAGAAAACGGGCTAAAGACGTGTACGAGTTCACGGAATGTCCAAACTGTTACGGACGGGGGAAACTCGTATGTCCGGTGTGTTTAGGGACTGGTGTACCGAACAACAAAGGTCTTCTCCGCAGGCCTGATGCCCGGCAGTTGCTCGATAAGATGTACAATGGCCGGCTTTTGCCAAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009553 GO:0009561 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0015036 GO:0015979 GO:0016020 GO:0016043 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047134 GO:0048229 GO:0048564 GO:0048856 GO:0055035 GO:0055114 GO:0061024 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

19.68

Weight (kDa)

9.41

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34860 AT2G34860
fragaria_vesca	FvH4_3g44571 FvH4_3g44681
malus_domestica	MD03G1011600.v1.1 MD11G1014500.v1.1
prunus_persica	Prupe.6G012000_v2.0.a1 Prupe.6G012000_v2.0.a1
pyrus_communis	pycom03g01050 pycom11g00980
rosa_chinensis	RchiOBHm_Chr5g0081351
rosa_laevigata	RLG00000036926
rosa_multiflora	Rmu_co8192032.1_g000001 Rmu_ssc0000432.1_g000028
rosa_roxburghii	Rroxscaffold_1G00002190
rosa_rugosa	Rorug05G0476000
rosa_samantha	Rh5AG527300 Rh5BG551500 Rh5CG574300 Rh5DG561400
rosa_wichuraiana	Rw5G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	225, 493
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	1 cut(s)	550
AfaI	GTAC	4 cut(s)	352, 398, 471, 530
AflIII	ACRYGT	2 cut(s)	209, 393
AgsI	TTSAA	4 cut(s)	79, 168, 186, 222
AjiI	CACGTC	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	136, 295
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
Alw26I	GTCTC	1 cut(s)	209
AoxI	GGCC	2 cut(s)	497, 535
ApeKI	GCWGC	2 cut(s)	129, 227
ApoI	RAATTY	1 cut(s)	550
AspLEI	GCGC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	508
AsuII	TTCGAA	1 cut(s)	83
BaeI	ACNNNNGTAYC	2 cut(s)	453, 486
BbsI	GAAGAC	1 cut(s)	479
BbvI	GCAGC	2 cut(s)	141, 214
BccI	CCATC	4 cut(s)	44, 72, 76, 275
BciT130I	CCWGG	2 cut(s)	138, 297
BcnI	CCSGG	1 cut(s)	508
BcoDI	GTCTC	1 cut(s)	209
BfoI	RGCGCY	1 cut(s)	327
BisI	GCNGC	2 cut(s)	130, 228
BlsI	GCNGC	2 cut(s)	131, 229
Bme1390I	CCNGG	3 cut(s)	138, 297, 508
BmgBI	CACGTC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	3 cut(s)	138, 297, 508
BmsI	GCATC	1 cut(s)	493
BpiI	GAAGAC	1 cut(s)	479
Bpu14I	TTCGAA	1 cut(s)	83
BpuEI	CTTGAG	2 cut(s)	137, 162
BpuMI	CCSGG	1 cut(s)	508
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bse118I	RCCGGY	1 cut(s)	537
Bse1I	ACTGG	2 cut(s)	282, 469
BseBI	CCWGG	2 cut(s)	138, 297
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	4 cut(s)	36, 64, 68, 286
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	282, 469
BseXI	GCAGC	2 cut(s)	141, 214
BshFI	GGCC	2 cut(s)	499, 537
BsiSI	CCGG	4 cut(s)	304, 449, 508, 538
BslFI	GGGAC	2 cut(s)	155, 475
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	2 cut(s)	155, 475
BsnI	GGCC	2 cut(s)	499, 537
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1407I	TGTACA	1 cut(s)	528
BspACI	CCGC	2 cut(s)	225, 493
BspANI	GGCC	2 cut(s)	499, 537
BspCNI	CTCAG	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	174
BspT104I	TTCGAA	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	537
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	2 cut(s)	282, 469
BssAI	RCCGGY	1 cut(s)	537
BssECI	CCNNGG	1 cut(s)	137
Bst2UI	CCWGG	2 cut(s)	138, 297
Bst4CI	ACNGT	1 cut(s)	422
BstAUI	TGTACA	1 cut(s)	528
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	497, 539
BstDEI	CTNAG	1 cut(s)	31
BstF5I	GGATG	4 cut(s)	36, 64, 68, 286
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	326
BstMAI	GTCTC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	2 cut(s)	138, 297
BstNSI	RCATGY	1 cut(s)	213
BstSCI	CCNGG	3 cut(s)	136, 295, 506
BstV1I	GCAGC	2 cut(s)	141, 214
BstV2I	GAAGAC	1 cut(s)	479
BsuRI	GGCC	2 cut(s)	499, 537
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	4 cut(s)	36, 64, 68, 286
BtsIMutI	CAGTG	1 cut(s)	275
Cac8I	GCNNGC	2 cut(s)	497, 539
CfoI	GCGC	1 cut(s)	326
Cfr10I	RCCGGY	1 cut(s)	537
CseI	GACGC	1 cut(s)	152
CsiI	ACCWGGT	1 cut(s)	295
Csp6I	GTAC	4 cut(s)	351, 397, 470, 529
CviAII	CATG	2 cut(s)	101, 210
CviJI	RGCY	7 cut(s)	8, 35, 368, 386, 499, 537, 541
CviKI_1	RGCY	7 cut(s)	8, 35, 368, 386, 499, 537, 541
CviQI	GTAC	4 cut(s)	351, 397, 470, 529
DdeI	CTNAG	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	535
Eco147I	AGGCCT	1 cut(s)	499
EcoRII	CCWGG	2 cut(s)	136, 295
FaeI	CATG	2 cut(s)	104, 213
FaiI	YATR	6 cut(s)	102, 211, 217, 341, 445, 556
FaqI	GGGAC	2 cut(s)	155, 475
FatI	CATG	2 cut(s)	100, 209
Fnu4HI	GCNGC	2 cut(s)	130, 228
FokI	GGATG	4 cut(s)	23, 51, 55, 293
Fsp4HI	GCNGC	2 cut(s)	130, 228
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	2 cut(s)	130, 228
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	499, 537
HapII	CCGG	4 cut(s)	304, 449, 508, 538
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	2 cut(s)	104, 213
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	4 cut(s)	304, 449, 508, 538
Hpy166II	GTNNAC	3 cut(s)	397, 405, 470
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	3 cut(s)	397, 405, 470
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	3 cut(s)	104, 248, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	104, 213
HspAI	GCGC	1 cut(s)	324
KroI	GCCGGC	1 cut(s)	537
KroNI	GCCGGC	1 cut(s)	539
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	2 cut(s)	141, 214
LweI	GCATC	1 cut(s)	493
MabI	ACCWGGT	1 cut(s)	295
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	422
MboII	GAAGA	4 cut(s)	3, 6, 9, 479
MluCI	AATT	4 cut(s)	79, 241, 307, 550
MnlI	CCTC	4 cut(s)	31, 59, 70, 186
MroNI	GCCGGC	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	214
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	4 cut(s)	304, 449, 508, 538
MspR9I	CCNGG	3 cut(s)	138, 297, 508
MvaI	CCWGG	2 cut(s)	138, 297
MwoI	GCNNNNNNNGC	1 cut(s)	266
NaeI	GCCGGC	1 cut(s)	539
NciI	CCSGG	1 cut(s)	508
NgoMIV	GCCGGC	1 cut(s)	537
NlaIII	CATG	2 cut(s)	104, 213
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	172
NspI	RCATGY	1 cut(s)	213
NspV	TTCGAA	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	499
PciI	ACATGT	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	539
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	131, 229
PscI	ACATGT	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	136, 295
PspGI	CCWGG	2 cut(s)	136, 295
PspN4I	GGNNCC	1 cut(s)	174
RsaI	GTAC	4 cut(s)	352, 398, 471, 530
RsaNI	GTAC	4 cut(s)	351, 397, 470, 529
RseI	CAYNNNNRTG	1 cut(s)	214
SatI	GCNGC	2 cut(s)	130, 228
ScrFI	CCNGG	3 cut(s)	138, 297, 508
SetI	ASST	5 cut(s)	178, 298, 370, 396, 487
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	1 cut(s)	493
SfuI	TTCGAA	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	214
SmlI	CTYRAG	2 cut(s)	116, 177
SmoI	CTYRAG	2 cut(s)	116, 177
Sse9I	AATT	4 cut(s)	79, 241, 307, 550
SseBI	AGGCCT	1 cut(s)	499
SsiI	CCGC	2 cut(s)	225, 493
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	3 cut(s)	136, 295, 506
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	2 cut(s)	83, 519
TasI	AATT	4 cut(s)	79, 241, 307, 550
TatI	WGTACW	1 cut(s)	528
TfiI	GAWTC	1 cut(s)	112
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	2 cut(s)	129, 227
TspDTI	ATGAA	2 cut(s)	89, 543
TspGWI	ACGGA	2 cut(s)	422, 441
TspRI	CASTG	1 cut(s)	282
XapI	RAATTY	1 cut(s)	550
XceI	RCATGY	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.