Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010235

Physical Location & Seq

Genomic Coordinates Forward (+)

788413 .. 791212

Gene Structure 2800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAAATAAAAATCTTAGTATCCTGCTATGACACATGGACACACCAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGATGGCTTCTTCTTCTTCCTCTCATCTCTCAGCCATCCCACTTCGCCTCTCCAAATCCTCCTCTTCATGCCACTTCAACTCAAAGTCTGTTGGGTTTCATGTAAGAGCGAATCTTGAGAATGAGAGCAGCAGTTCGGGGGACTCAGAACATTCATCTCAACCATCGAAGGAACCTCAAGTCTCAATCTCTCGGCGACTGTGTCTCACATGTCTATGTTCAACTGCTGCTTTGATAAGCAATTCTGCAACCACTTCTGCTCCAAAGGCACTAGCACTGGATGGAAGCGATAGACCTGGTTGCCGGAATTGTGGGGGAAGTGGTGCTGTGCTTTGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTTAACAGAAAACGGGCCAAGGATGTGTACGAGTTTACGGAATGTCCAAACTGTTACGGACGTGGGAAACTCGTATGTCCGGTTTGTTTAGGGACCGGTGTACCGAACAACAAAGGTCTTCTCCGGAGGCCTGATGCACGACAGTTACTCGATAAGATGTACAACGGCCGGCTACTGCCAAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009553 GO:0009561 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0015036 GO:0015979 GO:0016020 GO:0016043 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047134 GO:0048229 GO:0048564 GO:0048856 GO:0055035 GO:0055114 GO:0061024 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

22.88

Weight (kDa)

9.18

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34860 AT2G34860
fragaria_vesca	FvH4_3g44571 FvH4_3g44681
malus_domestica	MD03G1011600.v1.1 MD11G1014500.v1.1
prunus_persica	Prupe.6G012000_v2.0.a1 Prupe.6G012000_v2.0.a1
pyrus_communis	pycom03g01050 pycom11g00980
rosa_chinensis	RchiOBHm_Chr5g0081351
rosa_laevigata	RLG00000036926
rosa_multiflora	Rmu_co8192032.1_g000001 Rmu_ssc0000432.1_g000028
rosa_roxburghii	Rroxscaffold_1G00002190
rosa_rugosa	Rorug05G0476000
rosa_samantha	Rh5AG527300 Rh5BG551500 Rh5CG574300 Rh5DG561400
rosa_wichuraiana	Rw5G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	567
AcoI	YGGCCR	1 cut(s)	610
AcsI	RAATTY	1 cut(s)	625
AfaI	GTAC	4 cut(s)	427, 473, 546, 605
AflIII	ACRYGT	1 cut(s)	284
AgeI	ACCGGT	1 cut(s)	539
AgsI	TTSAA	2 cut(s)	154, 297
AjiI	CACGTC	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	1 cut(s)	443
AluI	AGCT	1 cut(s)	443
Alw26I	GTCTC	2 cut(s)	262, 284
Aor13HI	TCCGGA	1 cut(s)	567
AoxI	GGCC	3 cut(s)	459, 572, 610
ApeKI	GCWGC	2 cut(s)	204, 302
ApoI	RAATTY	1 cut(s)	625
AsiGI	ACCGGT	1 cut(s)	539
AspS9I	GGNCC	2 cut(s)	459, 537
AvaII	GGWCC	1 cut(s)	537
BaeI	ACNNNNGTAYC	2 cut(s)	528, 561
BbsI	GAAGAC	1 cut(s)	554
BbvI	GCAGC	2 cut(s)	216, 289
BccI	CCATC	4 cut(s)	73, 119, 247, 350
BceAI	ACGGC	1 cut(s)	625
BciT130I	CCWGG	1 cut(s)	372
BciVI	GTATCC	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	262, 284
BfaI	CTAG	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	2 cut(s)	205, 303
BlsI	GCNGC	2 cut(s)	206, 304
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	537
BmgBI	CACGTC	1 cut(s)	506
BmgT120I	GGNCC	2 cut(s)	459, 537
BmiI	GGNNCC	2 cut(s)	249, 538
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	568
BpiI	GAAGAC	1 cut(s)	554
BpuEI	CTTGAG	2 cut(s)	212, 237
BsaJI	CCNNGG	1 cut(s)	462
BsaWI	WCCGGW	3 cut(s)	523, 539, 567
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bse118I	RCCGGY	2 cut(s)	539, 612
Bse1I	ACTGG	1 cut(s)	357
BseAI	TCCGGA	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	4 cut(s)	81, 111, 361, 472
BseMII	CTCAG	2 cut(s)	120, 234
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	127
BseX3I	CGGCCG	1 cut(s)	610
BseXI	GCAGC	2 cut(s)	216, 289
Bsh1285I	CGRYCG	1 cut(s)	613
BshFI	GGCC	3 cut(s)	461, 574, 612
BshTI	ACCGGT	1 cut(s)	539
BsiEI	CGRYCG	1 cut(s)	613
BsiSI	CCGG	5 cut(s)	379, 524, 540, 568, 613
BslFI	GGGAC	2 cut(s)	230, 550
BsmAI	GTCTC	2 cut(s)	262, 284
BsmFI	GGGAC	2 cut(s)	230, 550
BsnI	GGCC	3 cut(s)	461, 574, 612
Bsp13I	TCCGGA	1 cut(s)	567
Bsp1407I	TGTACA	1 cut(s)	603
BspANI	GGCC	3 cut(s)	461, 574, 612
BspCNI	CTCAG	2 cut(s)	119, 233
BspEI	TCCGGA	1 cut(s)	567
BspLI	GGNNCC	2 cut(s)	249, 538
BsrFI	RCCGGY	2 cut(s)	539, 612
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	357
BssAI	RCCGGY	2 cut(s)	539, 612
BssECI	CCNNGG	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	276, 497, 588
Bst6I	CTCTTC	1 cut(s)	145
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	614
BstDEI	CTNAG	3 cut(s)	16, 106, 220
BstF5I	GGATG	4 cut(s)	81, 111, 361, 472
BstMAI	GTCTC	2 cut(s)	262, 284
BstMCI	CGRYCG	1 cut(s)	613
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	370
BstV1I	GCAGC	2 cut(s)	216, 289
BstV2I	GAAGAC	1 cut(s)	554
BstZI	CGGCCG	1 cut(s)	610
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	3 cut(s)	461, 574, 612
BtrI	CACGTC	1 cut(s)	506
BtsCI	GGATG	4 cut(s)	81, 111, 361, 472
BtsIMutI	CAGTG	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	614
Cfr10I	RCCGGY	2 cut(s)	539, 612
Cfr13I	GGNCC	2 cut(s)	459, 537
CsiI	ACCWGGT	1 cut(s)	370
Csp6I	GTAC	4 cut(s)	426, 472, 545, 604
CspAI	ACCGGT	1 cut(s)	539
CviAII	CATG	4 cut(s)	36, 144, 176, 285
CviJI	RGCY	7 cut(s)	83, 110, 443, 461, 574, 612, 616
CviKI_1	RGCY	7 cut(s)	83, 110, 443, 461, 574, 612, 616
CviQI	GTAC	4 cut(s)	426, 472, 545, 604
DdeI	CTNAG	3 cut(s)	16, 106, 220
EaeI	YGGCCR	1 cut(s)	610
EagI	CGGCCG	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
EclXI	CGGCCG	1 cut(s)	610
Eco130I	CCWWGG	1 cut(s)	462
Eco147I	AGGCCT	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	537
Eco52I	CGGCCG	1 cut(s)	610
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	4 cut(s)	39, 147, 179, 288
FaiI	YATR	9 cut(s)	30, 37, 145, 177, 286, 292, 416, 520, 631
FaqI	GGGAC	2 cut(s)	230, 550
FatI	CATG	4 cut(s)	35, 143, 175, 284
Fnu4HI	GCNGC	2 cut(s)	205, 303
FokI	GGATG	4 cut(s)	88, 98, 368, 479
Fsp4HI	GCNGC	2 cut(s)	205, 303
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	2 cut(s)	205, 303
HaeIII	GGCC	3 cut(s)	461, 574, 612
HapII	CCGG	5 cut(s)	379, 524, 540, 568, 613
Hin1II	CATG	4 cut(s)	39, 147, 179, 288
HinfI	GANTC	2 cut(s)	187, 218
HpaII	CCGG	5 cut(s)	379, 524, 540, 568, 613
Hpy166II	GTNNAC	3 cut(s)	472, 480, 545
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	2 cut(s)	191, 568
Hpy8I	GTNNAC	3 cut(s)	472, 480, 545
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	3 cut(s)	276, 497, 588
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	2 cut(s)	323, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	3 cut(s)	16, 106, 220
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	4 cut(s)	39, 147, 179, 288
Kpn2I	TCCGGA	1 cut(s)	567
KroI	GCCGGC	1 cut(s)	612
KroNI	GCCGGC	1 cut(s)	614
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	2 cut(s)	216, 289
LweI	GCATC	1 cut(s)	568
MabI	ACCWGGT	1 cut(s)	370
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	2 cut(s)	497, 588
MboII	GAAGA	5 cut(s)	78, 81, 84, 132, 554
MluCI	AATT	3 cut(s)	316, 382, 625
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	7 cut(s)	66, 106, 134, 145, 148, 261, 564
MroI	TCCGGA	1 cut(s)	567
MroNI	GCCGGC	1 cut(s)	612
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	289
MspI	CCGG	5 cut(s)	379, 524, 540, 568, 613
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	341
NaeI	GCCGGC	1 cut(s)	614
NgoMIV	GCCGGC	1 cut(s)	612
NlaIII	CATG	4 cut(s)	39, 147, 179, 288
NlaIV	GGNNCC	2 cut(s)	249, 538
NmeAIII	GCCGAG	1 cut(s)	247
NspI	RCATGY	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	574
PciI	ACATGT	1 cut(s)	284
PdiI	GCCGGC	1 cut(s)	614
PfeI	GAWTC	1 cut(s)	187
PflFI	GACNNNGTC	1 cut(s)	276
PinAI	ACCGGT	1 cut(s)	539
PkrI	GCNGC	2 cut(s)	206, 304
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PscI	ACATGT	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	249, 538
PspPI	GGNCC	2 cut(s)	459, 537
PsyI	GACNNNGTC	1 cut(s)	276
RsaI	GTAC	4 cut(s)	427, 473, 546, 605
RsaNI	GTAC	4 cut(s)	426, 472, 545, 604
RseI	CAYNNNNRTG	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	205, 303
Sau96I	GGNCC	2 cut(s)	459, 537
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	372
SetI	ASST	5 cut(s)	253, 373, 445, 508, 562
SexAI	ACCWGGT	1 cut(s)	370
SfaNI	GCATC	1 cut(s)	568
SinI	GGWCC	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	289
SmlI	CTYRAG	2 cut(s)	191, 252
SmoI	CTYRAG	2 cut(s)	191, 252
Sse9I	AATT	3 cut(s)	316, 382, 625
SseBI	AGGCCT	1 cut(s)	574
SspMI	CTAG	1 cut(s)	347
StuI	AGGCCT	1 cut(s)	574
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	3 cut(s)	276, 497, 588
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	2 cut(s)	242, 594
TasI	AATT	3 cut(s)	316, 382, 625
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	2 cut(s)	204, 302
TspDTI	ATGAA	4 cut(s)	132, 164, 219, 618
TspGWI	ACGGA	2 cut(s)	497, 516
TspRI	CASTG	1 cut(s)	357
Tth111I	GACNNNGTC	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	537
XapI	RAATTY	1 cut(s)	625
XceI	RCATGY	1 cut(s)	288
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.