Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8192032.1

Orthogroup ID

OG0010235

Physical Location & Seq

Genomic Coordinates Forward (+)

31 .. 541

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8192032.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

atgtgtggtggtactggaaaatggaaagctctcaacagaaaacgagctaaagatgtgtatgagtttacagaatgtccaaattgttacggtcgggggaaacttgtatgtcccgtatgtttagggactggtgtaccaaacaacaaaggtcttctcaggaggcctgatgcaaagcagctacttgagaagatgtacaatggtcggctagtgccaaactcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009553 GO:0009561 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0015036 GO:0015979 GO:0016020 GO:0016043 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047134 GO:0048229 GO:0048564 GO:0048856 GO:0055035 GO:0055114 GO:0061024 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

72

Amino Acids

8.02

Weight (kDa)

9.72

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34860 AT2G34860
fragaria_vesca	FvH4_3g44571 FvH4_3g44681
malus_domestica	MD03G1011600.v1.1 MD11G1014500.v1.1
prunus_persica	Prupe.6G012000_v2.0.a1 Prupe.6G012000_v2.0.a1
pyrus_communis	pycom03g01050 pycom11g00980
rosa_chinensis	RchiOBHm_Chr5g0081351
rosa_laevigata	RLG00000036926
rosa_multiflora	Rmu_co8192032.1_g000001 Rmu_ssc0000432.1_g000028
rosa_roxburghii	Rroxscaffold_1G00002190
rosa_rugosa	Rorug05G0476000
rosa_samantha	Rh5AG527300 Rh5BG551500 Rh5CG574300 Rh5DG561400
rosa_wichuraiana	Rw5G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	13, 132, 191
AluBI	AGCT	3 cut(s)	29, 47, 175
AluI	AGCT	3 cut(s)	29, 47, 175
AoxI	GGCC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	172
BaeI	ACNNNNGTAYC	2 cut(s)	114, 147
BbsI	GAAGAC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	203
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	19, 130
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	2 cut(s)	19, 130
BseXI	GCAGC	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	160
BsiEI	CGRYCG	1 cut(s)	91
BslFI	GGGAC	2 cut(s)	93, 136
BsmFI	GGGAC	2 cut(s)	93, 136
BsnI	GGCC	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	189
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	165
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	19, 130
Bst4CI	ACNGT	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	152
BstMCI	CGRYCG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	160
Csp6I	GTAC	3 cut(s)	12, 131, 190
CviJI	RGCY	5 cut(s)	29, 47, 160, 175, 202
CviKI_1	RGCY	5 cut(s)	29, 47, 160, 175, 202
CviQI	GTAC	3 cut(s)	12, 131, 190
DdeI	CTNAG	1 cut(s)	152
Eco147I	AGGCCT	1 cut(s)	160
FaiI	YATR	3 cut(s)	60, 106, 115
FaqI	GGGAC	2 cut(s)	93, 136
Fnu4HI	GCNGC	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	66, 131
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	2 cut(s)	66, 131
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	152
LpnPI	CCDG	3 cut(s)	111, 139, 174
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	83
MboII	GAAGA	2 cut(s)	140, 196
MluCI	AATT	1 cut(s)	79
MnlI	CCTC	1 cut(s)	150
MseI	TTAA	1 cut(s)	217
PceI	AGGCCT	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	174
RsaI	GTAC	3 cut(s)	13, 132, 191
RsaNI	GTAC	3 cut(s)	12, 131, 190
SaqAI	TTAA	1 cut(s)	217
SatI	GCNGC	1 cut(s)	173
SetI	ASST	4 cut(s)	31, 49, 148, 177
SfaNI	GCATC	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	79
SseBI	AGGCCT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	89
TasI	AATT	1 cut(s)	79
TatI	WGTACW	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	217
Tru9I	TTAA	1 cut(s)	217
TseI	GCWGC	1 cut(s)	172
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.