Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010235

Physical Location & Seq

Genomic Coordinates Reverse (-)

81404223 .. 81407334

Gene Structure 3112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG574300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTTCCTCTTCTTCTTCTTCTCATCTCTCAGCCATACCGCAACGCCTGCCAAAATCCTCACCAGGCCATTTCAACGCAAAGTCAGTTGGGTTTCATGTAAGATCCAATCTTGAGAACGAGAGTGGCAGTCCAGGGGATTCGGAGCATTCAGCTAAACCATCAAAGGGATCTCAGGTCGCAATCTCTCGACGATTGTGTCTCACATGTCTATGTTCAACTGCTGCTTTGATAAGCAACTCTCCAAAGGCAGTTGCACTGGATGGAAAAGACAGACCACCTGGGTGCAGGAATTGTGGGGGAAGTGGAGCTGTGCTCTGTGATATGTGTGGTGGTACTGGAAAATGGAAAGCTCTCAACAGAAAACGAGCTAAAGATGTGTATGAGTTTACAGAATGTCCAAATTGTTACGGTATGCAGTTCTCATTGATACTCATATTTCTGTTTTTGTGTCATATTTCCTTGAAAGAAAACATATATCCAGTATTACAGTATCTGTGGCATTTGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009553 GO:0009561 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0015036 GO:0015979 GO:0016020 GO:0016043 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047134 GO:0048229 GO:0048564 GO:0048856 GO:0055035 GO:0055114 GO:0061024 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.44

Weight (kDa)

9.07

Isoelectric Point (pI)

61.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34860 AT2G34860
fragaria_vesca	FvH4_3g44571 FvH4_3g44681
malus_domestica	MD03G1011600.v1.1 MD11G1014500.v1.1
prunus_persica	Prupe.6G012000_v2.0.a1 Prupe.6G012000_v2.0.a1
pyrus_communis	pycom03g01050 pycom11g00980
rosa_chinensis	RchiOBHm_Chr5g0081351
rosa_laevigata	RLG00000036926
rosa_multiflora	Rmu_co8192032.1_g000001 Rmu_ssc0000432.1_g000028
rosa_roxburghii	Rroxscaffold_1G00002190
rosa_rugosa	Rorug05G0476000
rosa_samantha	Rh5AG527300 Rh5BG551500 Rh5CG574300 Rh5DG561400
rosa_wichuraiana	Rw5G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	198
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	2 cut(s)	99, 178
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	76, 219, 466
AjnI	CCWGG	3 cut(s)	64, 133, 280
AleI	CACNNNNGTG	1 cut(s)	283
AluBI	AGCT	4 cut(s)	155, 311, 353, 371
AluI	AGCT	4 cut(s)	155, 311, 353, 371
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	2 cut(s)	99, 178
AlwNI	CAGNNNCTG	1 cut(s)	496
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	169, 257
BciT130I	CCWGG	3 cut(s)	66, 135, 282
BcoDI	GTCTC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	3 cut(s)	66, 135, 282
BmrFI	CCNGG	3 cut(s)	66, 135, 282
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
BpuEI	CTTGAG	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	134, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	3 cut(s)	264, 343, 482
BseBI	CCWGG	3 cut(s)	66, 135, 282
BseDI	CCNNGG	2 cut(s)	134, 281
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	2 cut(s)	45, 188
BseNI	ACTGG	3 cut(s)	264, 343, 482
BseXI	GCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	307
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	104, 170
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	2 cut(s)	44, 187
BspPI	GGATC	2 cut(s)	99, 178
BsrI	ACTGG	3 cut(s)	264, 343, 482
BssECI	CCNNGG	2 cut(s)	134, 281
BssMI	GATC	2 cut(s)	104, 170
Bst2UI	CCWGG	3 cut(s)	66, 135, 282
Bst4CI	ACNGT	2 cut(s)	413, 492
Bst6I	CTCTTC	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	31, 174
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	2 cut(s)	107, 173
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	104, 170
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNI	CCWGG	3 cut(s)	66, 135, 282
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	3 cut(s)	64, 133, 280
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	2 cut(s)	104, 170
BstYI	RGATCY	2 cut(s)	104, 170
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	50
CaiI	CAGNNNCTG	1 cut(s)	496
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	2 cut(s)	98, 207
CviJI	RGCY	7 cut(s)	5, 35, 69, 155, 311, 353, 371
CviKI_1	RGCY	7 cut(s)	5, 35, 69, 155, 311, 353, 371
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	2 cut(s)	31, 174
DpnI	GATC	2 cut(s)	106, 172
DpnII	GATC	2 cut(s)	104, 170
DrdI	GACNNNNNNGTC	1 cut(s)	198
DseDI	GACNNNNNNGTC	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
EcoRII	CCWGG	3 cut(s)	64, 133, 280
FaeI	CATG	2 cut(s)	101, 210
FatI	CATG	2 cut(s)	97, 206
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	101, 210
HinfI	GANTC	1 cut(s)	140
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	113, 189
Hpy8I	GTNNAC	1 cut(s)	390
Hpy99I	CGWCG	1 cut(s)	195
HpyCH4III	ACNGT	2 cut(s)	413, 492
HpyCH4V	TGCA	3 cut(s)	257, 288, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	2 cut(s)	31, 174
Hsp92II	CATG	2 cut(s)	101, 210
Kzo9I	GATC	2 cut(s)	104, 170
LmnI	GCTCC	2 cut(s)	145, 308
Lsp1109I	GCAGC	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	2 cut(s)	106, 172
MboI	GATC	2 cut(s)	104, 170
MboII	GAAGA	4 cut(s)	3, 6, 9, 12
MflI	RGATCY	2 cut(s)	104, 170
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	2 cut(s)	292, 403
MnlI	CCTC	2 cut(s)	19, 70
MslI	CAYNNNNRTG	2 cut(s)	211, 283
MspR9I	CCNGG	3 cut(s)	66, 135, 282
Mva1269I	GAATGC	1 cut(s)	148
MvaI	CCWGG	3 cut(s)	66, 135, 282
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	2 cut(s)	104, 170
NlaIII	CATG	2 cut(s)	101, 210
NspI	RCATGY	1 cut(s)	210
OliI	CACNNNNGTG	1 cut(s)	283
PciI	ACATGT	1 cut(s)	206
PctI	GAATGC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	226
PscI	ACATGT	1 cut(s)	206
Psp6I	CCWGG	3 cut(s)	64, 133, 280
PspGI	CCWGG	3 cut(s)	64, 133, 280
PstNI	CAGNNNCTG	1 cut(s)	496
PsuI	RGATCY	2 cut(s)	104, 170
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	2 cut(s)	211, 283
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	104, 170
ScrFI	CCNGG	3 cut(s)	66, 135, 282
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	6 cut(s)	157, 180, 283, 313, 355, 373
SmiMI	CAYNNNNRTG	2 cut(s)	211, 283
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	2 cut(s)	292, 403
SsiI	CCGC	1 cut(s)	41
StyD4I	CCNGG	3 cut(s)	64, 133, 280
TaaI	ACNGT	2 cut(s)	413, 492
TaqI	TCGA	1 cut(s)	190
TasI	AATT	2 cut(s)	292, 403
TfiI	GAWTC	1 cut(s)	140
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	264
XceI	RCATGY	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.