Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010235

Physical Location & Seq

Genomic Coordinates Reverse (-)

87697801 .. 87700224

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG551500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTTCCTCTTCTTCTTCTTCTCATCTCTCAGCCATACCGCAACGCCTGCCAAAATCCTCACCAGGCCATTTCAACGCAAAGTCAGTTGGGTTTCATGTAAGATCCAATCTTGAGAACGAGAGTGGCAGTCCAGGGGATTCGGAGCATTCAGCTAAACCATCAAAGGGATCTCAGGTCGCAATCTCTCGACGATTGTGTCTCACATGTCTATGTTCAACTGCTGCTTTGATAAGCAACTCTCCAAAGGCAGTTGCACTGGATGGAAAAGACAGACCACCTGGGTGCAGGAATTGTGGGGGAAGTGGAGCTGTGCTCTGTGATATGTGTGGTGGTACTGGAAAATGGAAAGCTCTCAACAGAAAACGAGCTAAAGATGTGTATGAGTTTACAGAATGTCCAAATTGTTACGGTCGGGGGAAACTTGTATGTCCCGTATGTTTAGGGACTGGTGTACCAAACAACAAAGGTCTTCTCAGGAGGCCTGATGCAAAGCAGCTACTTGAGAAGATGTACAATGGTCGGCTAGTGCCAAACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009553 GO:0009561 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0015036 GO:0015979 GO:0016020 GO:0016043 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047134 GO:0048229 GO:0048564 GO:0048856 GO:0055035 GO:0055114 GO:0061024 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

19.02

Weight (kDa)

9.54

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_CXXCXGXG	PF00684	96 - 151	2.5e-06	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34860 AT2G34860
fragaria_vesca	FvH4_3g44571 FvH4_3g44681
malus_domestica	MD03G1011600.v1.1 MD11G1014500.v1.1
prunus_persica	Prupe.6G012000_v2.0.a1 Prupe.6G012000_v2.0.a1
pyrus_communis	pycom03g01050 pycom11g00980
rosa_chinensis	RchiOBHm_Chr5g0081351
rosa_laevigata	RLG00000036926
rosa_multiflora	Rmu_co8192032.1_g000001 Rmu_ssc0000432.1_g000028
rosa_roxburghii	Rroxscaffold_1G00002190
rosa_rugosa	Rorug05G0476000
rosa_samantha	Rh5AG527300 Rh5BG551500 Rh5CG574300 Rh5DG561400
rosa_wichuraiana	Rw5G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	198
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	2 cut(s)	99, 178
AfaI	GTAC	3 cut(s)	337, 456, 515
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	76, 219
AjnI	CCWGG	3 cut(s)	64, 133, 280
AleI	CACNNNNGTG	1 cut(s)	283
AluBI	AGCT	5 cut(s)	155, 311, 353, 371, 499
AluI	AGCT	5 cut(s)	155, 311, 353, 371, 499
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	2 cut(s)	99, 178
AoxI	GGCC	2 cut(s)	67, 482
ApeKI	GCWGC	2 cut(s)	224, 496
AsuHPI	GGTGA	1 cut(s)	54
BaeI	ACNNNNGTAYC	2 cut(s)	438, 471
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	211, 508
BccI	CCATC	2 cut(s)	169, 257
BciT130I	CCWGG	3 cut(s)	66, 135, 282
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	527
BisI	GCNGC	2 cut(s)	225, 497
BlsI	GCNGC	2 cut(s)	226, 498
Bme1390I	CCNGG	3 cut(s)	66, 135, 282
BmrFI	CCNGG	3 cut(s)	66, 135, 282
BmsI	GCATC	1 cut(s)	478
BpiI	GAAGAC	1 cut(s)	464
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
BpuEI	CTTGAG	2 cut(s)	134, 524
BsaJI	CCNNGG	2 cut(s)	134, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	3 cut(s)	264, 343, 454
BseBI	CCWGG	3 cut(s)	66, 135, 282
BseDI	CCNNGG	2 cut(s)	134, 281
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	3 cut(s)	45, 188, 490
BseNI	ACTGG	3 cut(s)	264, 343, 454
BseXI	GCAGC	2 cut(s)	211, 508
BsgI	GTGCAG	1 cut(s)	307
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	69, 484
BsiEI	CGRYCG	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	318
BslFI	GGGAC	2 cut(s)	417, 460
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	2 cut(s)	417, 460
BsmI	GAATGC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	69, 484
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	2 cut(s)	104, 170
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	2 cut(s)	69, 484
BspCNI	CTCAG	3 cut(s)	44, 187, 489
BspPI	GGATC	2 cut(s)	99, 178
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	3 cut(s)	264, 343, 454
BssECI	CCNNGG	2 cut(s)	134, 281
BssMI	GATC	2 cut(s)	104, 170
Bst2UI	CCWGG	3 cut(s)	66, 135, 282
Bst4CI	ACNGT	1 cut(s)	413
Bst6I	CTCTTC	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	3 cut(s)	31, 174, 476
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	2 cut(s)	107, 173
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	104, 170
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNI	CCWGG	3 cut(s)	66, 135, 282
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	3 cut(s)	64, 133, 280
BstV1I	GCAGC	2 cut(s)	211, 508
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	2 cut(s)	104, 170
BstYI	RGATCY	2 cut(s)	104, 170
BsuRI	GGCC	2 cut(s)	69, 484
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	336, 455, 514
CviAII	CATG	2 cut(s)	98, 207
CviQI	GTAC	3 cut(s)	336, 455, 514
DdeI	CTNAG	3 cut(s)	31, 174, 476
DpnI	GATC	2 cut(s)	106, 172
DpnII	GATC	2 cut(s)	104, 170
DrdI	GACNNNNNNGTC	1 cut(s)	198
DseDI	GACNNNNNNGTC	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco147I	AGGCCT	1 cut(s)	484
EcoRII	CCWGG	3 cut(s)	64, 133, 280
FaeI	CATG	2 cut(s)	101, 210
FaiI	YATR	8 cut(s)	38, 99, 208, 214, 326, 384, 430, 439
FaqI	GGGAC	2 cut(s)	417, 460
FatI	CATG	2 cut(s)	97, 206
Fnu4HI	GCNGC	2 cut(s)	225, 497
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	225, 497
FspBI	CTAG	1 cut(s)	527
GluI	GCNGC	2 cut(s)	225, 497
HaeIII	GGCC	2 cut(s)	69, 484
Hin1II	CATG	2 cut(s)	101, 210
HinfI	GANTC	1 cut(s)	140
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	2 cut(s)	390, 455
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	3 cut(s)	113, 189, 478
Hpy8I	GTNNAC	2 cut(s)	390, 455
Hpy99I	CGWCG	1 cut(s)	195
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4V	TGCA	3 cut(s)	257, 288, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	3 cut(s)	31, 174, 476
Hsp92II	CATG	2 cut(s)	101, 210
Kzo9I	GATC	2 cut(s)	104, 170
LmnI	GCTCC	2 cut(s)	145, 308
Lsp1109I	GCAGC	2 cut(s)	211, 508
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	1 cut(s)	527
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	2 cut(s)	106, 172
MboI	GATC	2 cut(s)	104, 170
MboII	GAAGA	6 cut(s)	3, 6, 9, 12, 464, 520
MflI	RGATCY	2 cut(s)	104, 170
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	2 cut(s)	292, 403
MnlI	CCTC	3 cut(s)	19, 70, 474
MseI	TTAA	1 cut(s)	541
MslI	CAYNNNNRTG	2 cut(s)	211, 283
MspR9I	CCNGG	3 cut(s)	66, 135, 282
Mva1269I	GAATGC	1 cut(s)	148
MvaI	CCWGG	3 cut(s)	66, 135, 282
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	2 cut(s)	104, 170
NlaIII	CATG	2 cut(s)	101, 210
NspI	RCATGY	1 cut(s)	210
OliI	CACNNNNGTG	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	484
PciI	ACATGT	1 cut(s)	206
PctI	GAATGC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	226, 498
PscI	ACATGT	1 cut(s)	206
Psp6I	CCWGG	3 cut(s)	64, 133, 280
PspGI	CCWGG	3 cut(s)	64, 133, 280
PsuI	RGATCY	2 cut(s)	104, 170
RsaI	GTAC	3 cut(s)	337, 456, 515
RsaNI	GTAC	3 cut(s)	336, 455, 514
RseI	CAYNNNNRTG	2 cut(s)	211, 283
SaqAI	TTAA	1 cut(s)	541
SatI	GCNGC	2 cut(s)	225, 497
Sau3AI	GATC	2 cut(s)	104, 170
ScrFI	CCNGG	3 cut(s)	66, 135, 282
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	8 cut(s)	157, 180, 283, 313, 355, 373, 472, 501
SfaNI	GCATC	1 cut(s)	478
SmiMI	CAYNNNNRTG	2 cut(s)	211, 283
SmlI	CTYRAG	2 cut(s)	113, 503
SmoI	CTYRAG	2 cut(s)	113, 503
Sse9I	AATT	2 cut(s)	292, 403
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	527
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	3 cut(s)	64, 133, 280
TaaI	ACNGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	190
TasI	AATT	2 cut(s)	292, 403
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	541
Tru9I	TTAA	1 cut(s)	541
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	2 cut(s)	224, 496
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	264
XceI	RCATGY	1 cut(s)	210
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.