Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010235

Physical Location & Seq

Genomic Coordinates Forward (+)

1153391 .. 1154708

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1014500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGATAGACCTGGTTGTCGGAATTGTGGGGGAAGTGGCGCTGTGCTTTGTAAGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTTAACAGAAAACGGGCTAAGGACGTGTACGAGTTTACTGAATGCCCAAACTGTTACGGACGCGGGAAGCTCGTGTGTCCGGTTTGTTTAGGGACTGGTGTACCGAACAACAAAGGTCTTCTCCGGAGACCTGATGCACGACAGTTACTCGATAAGATGTACAATGGCCGGCTTTTGCCAAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009553 GO:0009561 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0015036 GO:0015979 GO:0016020 GO:0016043 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047134 GO:0048229 GO:0048564 GO:0048856 GO:0055035 GO:0055114 GO:0061024 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

10.0

Weight (kDa)

9.19

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34860 AT2G34860
fragaria_vesca	FvH4_3g44571 FvH4_3g44681
malus_domestica	MD03G1011600.v1.1 MD11G1014500.v1.1
prunus_persica	Prupe.6G012000_v2.0.a1 Prupe.6G012000_v2.0.a1
pyrus_communis	pycom03g01050 pycom11g00980
rosa_chinensis	RchiOBHm_Chr5g0081351
rosa_laevigata	RLG00000036926
rosa_multiflora	Rmu_co8192032.1_g000001 Rmu_ssc0000432.1_g000028
rosa_roxburghii	Rroxscaffold_1G00002190
rosa_rugosa	Rorug05G0476000
rosa_samantha	Rh5AG527300 Rh5BG551500 Rh5CG574300 Rh5DG561400
rosa_wichuraiana	Rw5G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	14
AccII	CGCG	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	210
AciI	CCGC	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	268
AfaI	GTAC	4 cut(s)	70, 116, 189, 248
AflIII	ACRYGT	1 cut(s)	111
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	2 cut(s)	86, 157
AluI	AGCT	2 cut(s)	86, 157
Alw26I	GTCTC	1 cut(s)	208
Aor13HI	TCCGGA	1 cut(s)	210
AoxI	GGCC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	40
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
BauI	CACGAG	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	208
BfoI	RGCGCY	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	11
BmgBI	CACGTC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	197
Bpu10I	CCTNAGC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	208
BsaWI	WCCGGW	2 cut(s)	166, 210
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	187
BseAI	TCCGGA	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	255
BsiSI	CCGG	3 cut(s)	167, 211, 256
BslFI	GGGAC	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	208
Bsp13I	TCCGGA	1 cut(s)	210
Bsp1407I	TGTACA	1 cut(s)	246
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	255
BspEI	TCCGGA	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	150
BspTNI	GGTCTC	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	255
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	158
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	2 cut(s)	140, 231
BstAUI	TGTACA	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	257
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	255
CseI	GACGC	1 cut(s)	156
CsiI	ACCWGGT	1 cut(s)	9
Csp6I	GTAC	4 cut(s)	69, 115, 188, 247
CviJI	RGCY	5 cut(s)	86, 104, 157, 255, 259
CviKI_1	RGCY	5 cut(s)	86, 104, 157, 255, 259
CviQI	GTAC	4 cut(s)	69, 115, 188, 247
DdeI	CTNAG	1 cut(s)	105
DrdI	GACNNNNNNGTC	1 cut(s)	14
DseDI	GACNNNNNNGTC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	253
Eco31I	GGTCTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	9
FaiI	YATR	2 cut(s)	59, 274
FaqI	GGGAC	1 cut(s)	193
FauI	CCCGC	1 cut(s)	143
GlaI	GCGC	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	3 cut(s)	167, 211, 256
HgaI	GACGC	1 cut(s)	156
HhaI	GCGC	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HpaII	CCGG	3 cut(s)	167, 211, 256
Hpy166II	GTNNAC	3 cut(s)	115, 123, 188
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	3 cut(s)	115, 123, 188
HpyCH4III	ACNGT	2 cut(s)	140, 231
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	111
HspAI	GCGC	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	210
KroI	GCCGGC	1 cut(s)	255
KroNI	GCCGGC	1 cut(s)	257
LpnPI	CCDG	7 cut(s)	23, 57, 168, 180, 224, 231, 269
LweI	GCATC	1 cut(s)	211
MabI	ACCWGGT	1 cut(s)	9
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	140, 231
MboII	GAAGA	1 cut(s)	197
MluCI	AATT	2 cut(s)	21, 268
MroI	TCCGGA	1 cut(s)	210
MroNI	GCCGGC	1 cut(s)	255
MseI	TTAA	1 cut(s)	90
MspI	CCGG	3 cut(s)	167, 211, 256
MspR9I	CCNGG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	150
NaeI	GCCGGC	1 cut(s)	257
NgoMIV	GCCGGC	1 cut(s)	255
PctI	GAATGC	1 cut(s)	134
PdiI	GCCGGC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
RsaI	GTAC	4 cut(s)	70, 116, 189, 248
RsaNI	GTAC	4 cut(s)	69, 115, 188, 247
SaqAI	TTAA	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	6 cut(s)	12, 88, 114, 159, 205, 220
SexAI	ACCWGGT	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	211
Sse9I	AATT	2 cut(s)	21, 268
SsiI	CCGC	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	140, 231
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	21, 268
TatI	WGTACW	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	261
TspGWI	ACGGA	1 cut(s)	159
XapI	RAATTY	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.