Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010235

Physical Location & Seq

Genomic Coordinates Reverse (-)

37221847 .. 37224506

Gene Structure 2660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44681.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTTCTTCTTCTTCTTCTCATCTCTCAGCCATACCGCAACGCCTGCCAAAATCATCACCAGCCCACTTGAACTCAAAGTCAGTCGGGTTTCACGTAAGATCCAATCTTGACAACGAGAGTGGCAGTCCGGGGGATTCGGATCATTCAGCTAAACCATCAAAGGCATCCAAGGTCTTAATCTCTCGACGATTGTGTCTCACATGTCTATGCTCAACTGCTGCTTTGATAAGCAACTCTCCAAGGGCAGTTGCACTGGATGGAAAAGACAGACCACCTGGGTGCCGGAATTGTGGGGGAAGTGGAGCTGTGCTTTGTGATATGTGTGGTGGAACCGGAAAATGGAAAGCTCTCAACAGAAAACGAGCTAAAGATGTGTATGAGTTTACAGAATGTCCAAATTGTTATGGTCGTGGGAAACTCGTATGCCCCGTATGTTTAGGGACTGGTGTACCAAACAACAAAGGTCTTCTCAGGAGGCCTGATGCAAAGCAGCTACTTGAGAAGATGTACAATGGTCGGCTAGTGCCAAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009553 GO:0009561 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0015036 GO:0015979 GO:0016020 GO:0016043 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047134 GO:0048229 GO:0048564 GO:0048856 GO:0055035 GO:0055114 GO:0061024 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

18.98

Weight (kDa)

9.63

Isoelectric Point (pI)

56.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_CXXCXGXG	PF00684	95 - 150	2.5e-06	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34860 AT2G34860
fragaria_vesca	FvH4_3g44571 FvH4_3g44681
malus_domestica	MD03G1011600.v1.1 MD11G1014500.v1.1
prunus_persica	Prupe.6G012000_v2.0.a1 Prupe.6G012000_v2.0.a1
pyrus_communis	pycom03g01050 pycom11g00980
rosa_chinensis	RchiOBHm_Chr5g0081351
rosa_laevigata	RLG00000036926
rosa_multiflora	Rmu_co8192032.1_g000001 Rmu_ssc0000432.1_g000028
rosa_roxburghii	Rroxscaffold_1G00002190
rosa_rugosa	Rorug05G0476000
rosa_samantha	Rh5AG527300 Rh5BG551500 Rh5CG574300 Rh5DG561400
rosa_wichuraiana	Rw5G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	282
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	2 cut(s)	96, 150
AcsI	RAATTY	1 cut(s)	532
AfaI	GTAC	2 cut(s)	453, 512
AfiI	CCNNNNNNNGG	1 cut(s)	342
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	277
AleI	CACNNNNGTG	1 cut(s)	280
AluBI	AGCT	5 cut(s)	152, 308, 350, 368, 496
AluI	AGCT	5 cut(s)	152, 308, 350, 368, 496
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	2 cut(s)	96, 150
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	2 cut(s)	221, 493
ApoI	RAATTY	1 cut(s)	532
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	51
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
BanI	GGYRCC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	208, 505
BccI	CCATC	2 cut(s)	166, 254
BciT130I	CCWGG	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	524
BisI	GCNGC	2 cut(s)	222, 494
BlsI	GCNGC	2 cut(s)	223, 495
Bme1390I	CCNGG	2 cut(s)	132, 279
BmiI	GGNNCC	2 cut(s)	284, 334
BmrFI	CCNGG	2 cut(s)	132, 279
BmsI	GCATC	2 cut(s)	176, 475
BpiI	GAAGAC	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	97
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	4 cut(s)	131, 171, 242, 278
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	2 cut(s)	261, 451
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	4 cut(s)	131, 171, 242, 278
BseGI	GGATG	2 cut(s)	167, 265
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	42, 487
BseNI	ACTGG	2 cut(s)	261, 451
BseXI	GCAGC	2 cut(s)	208, 505
BshFI	GGCC	1 cut(s)	481
BshNI	GGYRCC	1 cut(s)	282
BsiSI	CCGG	3 cut(s)	131, 286, 336
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	1 cut(s)	481
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	2 cut(s)	101, 142
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	2 cut(s)	41, 486
BspLI	GGNNCC	2 cut(s)	284, 334
BspPI	GGATC	2 cut(s)	96, 150
BspT107I	GGYRCC	1 cut(s)	282
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	261, 451
BssECI	CCNNGG	4 cut(s)	131, 171, 242, 278
BssMI	GATC	2 cut(s)	101, 142
BssT1I	CCWWGG	2 cut(s)	171, 242
Bst2UI	CCWGG	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstAUI	TGTACA	1 cut(s)	510
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	2 cut(s)	28, 473
BstF5I	GGATG	2 cut(s)	167, 265
BstKTI	GATC	2 cut(s)	104, 145
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	101, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	130, 277
BstV1I	GCAGC	2 cut(s)	208, 505
BstV2I	GAAGAC	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	167, 265
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	452, 511
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviAII	CATG	1 cut(s)	204
CviQI	GTAC	2 cut(s)	452, 511
DdeI	CTNAG	2 cut(s)	28, 473
DpnI	GATC	2 cut(s)	103, 144
DpnII	GATC	2 cut(s)	101, 142
DrdI	GACNNNNNNGTC	1 cut(s)	195
DseDI	GACNNNNNNGTC	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	171, 242
Eco147I	AGGCCT	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	2 cut(s)	171, 242
ErhI	CCWWGG	2 cut(s)	171, 242
FaeI	CATG	1 cut(s)	207
FaiI	YATR	8 cut(s)	35, 205, 211, 323, 381, 408, 427, 436
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	1 cut(s)	203
Fnu4HI	GCNGC	2 cut(s)	222, 494
FokI	GGATG	2 cut(s)	154, 272
Fsp4HI	GCNGC	2 cut(s)	222, 494
FspBI	CTAG	1 cut(s)	524
GluI	GCNGC	2 cut(s)	222, 494
HaeIII	GGCC	1 cut(s)	481
HapII	CCGG	3 cut(s)	131, 286, 336
Hin1II	CATG	1 cut(s)	207
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	3 cut(s)	131, 286, 336
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	2 cut(s)	387, 452
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	3 cut(s)	110, 186, 475
Hpy8I	GTNNAC	2 cut(s)	387, 452
Hpy99I	CGWCG	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	254, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	2 cut(s)	28, 473
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	207
Kzo9I	GATC	2 cut(s)	101, 142
LmnI	GCTCC	1 cut(s)	305
Lsp1109I	GCAGC	2 cut(s)	208, 505
LweI	GCATC	2 cut(s)	176, 475
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	1 cut(s)	96
MalI	GATC	2 cut(s)	103, 144
MboI	GATC	2 cut(s)	101, 142
MboII	GAAGA	5 cut(s)	3, 6, 9, 461, 517
MflI	RGATCY	1 cut(s)	101
MluCI	AATT	3 cut(s)	289, 400, 532
MnlI	CCTC	1 cut(s)	471
MseI	TTAA	2 cut(s)	179, 538
MslI	CAYNNNNRTG	2 cut(s)	208, 280
MspI	CCGG	3 cut(s)	131, 286, 336
MspR9I	CCNGG	2 cut(s)	132, 279
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	101, 142
NlaIII	CATG	1 cut(s)	207
NlaIV	GGNNCC	2 cut(s)	284, 334
NspI	RCATGY	1 cut(s)	207
OliI	CACNNNNGTG	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	481
PciI	ACATGT	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 429
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	223, 495
Ppu21I	YACGTR	1 cut(s)	97
PscI	ACATGT	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	284, 334
PsuI	RGATCY	1 cut(s)	101
RsaI	GTAC	2 cut(s)	453, 512
RsaNI	GTAC	2 cut(s)	452, 511
RseI	CAYNNNNRTG	2 cut(s)	208, 280
SaqAI	TTAA	2 cut(s)	179, 538
SatI	GCNGC	2 cut(s)	222, 494
Sau3AI	GATC	2 cut(s)	101, 142
ScrFI	CCNGG	2 cut(s)	132, 279
SetI	ASST	9 cut(s)	99, 154, 177, 280, 310, 352, 370, 469, 498
SfaNI	GCATC	2 cut(s)	176, 475
SmiMI	CAYNNNNRTG	2 cut(s)	208, 280
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	3 cut(s)	289, 400, 532
SseBI	AGGCCT	1 cut(s)	481
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	524
StuI	AGGCCT	1 cut(s)	481
StyD4I	CCNGG	2 cut(s)	130, 277
StyI	CCWWGG	2 cut(s)	171, 242
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	187
TasI	AATT	3 cut(s)	289, 400, 532
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	179, 538
Tru9I	TTAA	2 cut(s)	179, 538
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	2 cut(s)	221, 493
TspRI	CASTG	1 cut(s)	261
XapI	RAATTY	1 cut(s)	532
XceI	RCATGY	1 cut(s)	207
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.