Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010235

Physical Location & Seq

Genomic Coordinates Forward (+)

867750 .. 871173

Gene Structure 3424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G012000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCAGCACATGACTGTTGCAAAAACCAGATTCATGTCTTTGATCAATGATTGGTGGAAGGGCGATGGTTCTAACTATCATTTGTATGTAAACAATTTGGCAGTCAACACAAAGTCGGTTGGGTTTCATGTAAGATCCAATCTTGAGAATGACAGCTGCAGTCCGGGGGATTCAGACCACTCTTCTAAACCATCAAAGGAATCTCAGGCCTCAATCTCTCGACGACAGTGTCTCACATGCCTATGTTCAACCGTTGCATTGATAAGCAATTCTGCAATCTCTACTTCCGTTCCAAAGGCATTTGCACTGGATGGAAAAGAGAGACCAGCTGGTTGCCGGAATTGTGGGGGAAGTGGCGCTGTGCTTTGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTCAATAGAAAACGGGCTAAAGATGTGTATGAGTTTACAGAATGTCCAAACTGTTACGGTCGGGGGAAACTCGTATGTCCGGTTTGTTTAGGGACTGGTGTACCAAACAACAAAGGTCTGCTTCGAAGGCCTGATGCAAAGCAGTTACTTGATAAGATGTACAATGGTCGGCTATTGCCAAACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009553 GO:0009561 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0015036 GO:0015979 GO:0016020 GO:0016043 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047134 GO:0048229 GO:0048564 GO:0048856 GO:0055035 GO:0055114 GO:0061024 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

21.33

Weight (kDa)

9.27

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34860 AT2G34860
fragaria_vesca	FvH4_3g44571 FvH4_3g44681
malus_domestica	MD03G1011600.v1.1 MD11G1014500.v1.1
prunus_persica	Prupe.6G012000_v2.0.a1 Prupe.6G012000_v2.0.a1
pyrus_communis	pycom03g01050 pycom11g00980
rosa_chinensis	RchiOBHm_Chr5g0081351
rosa_laevigata	RLG00000036926
rosa_multiflora	Rmu_co8192032.1_g000001 Rmu_ssc0000432.1_g000028
rosa_roxburghii	Rroxscaffold_1G00002190
rosa_rugosa	Rorug05G0476000
rosa_samantha	Rh5AG527300 Rh5BG551500 Rh5CG574300 Rh5DG561400
rosa_wichuraiana	Rw5G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	228
AclWI	GGATC	1 cut(s)	129
AfaI	GTAC	3 cut(s)	385, 504, 563
AgsI	TTSAA	1 cut(s)	249
AluBI	AGCT	3 cut(s)	156, 329, 401
AluI	AGCT	3 cut(s)	156, 329, 401
Alw26I	GTCTC	2 cut(s)	236, 316
AlwI	GGATC	1 cut(s)	129
AoxI	GGCC	2 cut(s)	207, 530
ApeKI	GCWGC	2 cut(s)	4, 156
AspLEI	GCGC	1 cut(s)	359
AsuC2I	CCSGG	1 cut(s)	165
AsuII	TTCGAA	1 cut(s)	526
BaeI	ACNNNNGTAYC	2 cut(s)	486, 519
BbvI	GCAGC	2 cut(s)	16, 143
BccI	CCATC	3 cut(s)	59, 199, 305
BclI	TGATCA	1 cut(s)	42
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	236, 316
BfmI	CTRYAG	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	360
BisI	GCNGC	2 cut(s)	5, 157
BlsI	GCNGC	2 cut(s)	6, 158
Bme1390I	CCNGG	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	526
Bpu14I	TTCGAA	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	481
Bse1I	ACTGG	2 cut(s)	312, 502
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	2 cut(s)	312, 502
BseXI	GCAGC	2 cut(s)	16, 143
Bsh1285I	CGRYCG	1 cut(s)	463
BshFI	GGCC	2 cut(s)	209, 532
BsiEI	CGRYCG	1 cut(s)	463
BsiSI	CCGG	3 cut(s)	164, 337, 482
BslFI	GGGAC	1 cut(s)	508
BsmAI	GTCTC	2 cut(s)	236, 316
BsmFI	GGGAC	1 cut(s)	508
BsnI	GGCC	2 cut(s)	209, 532
Bso31I	GGTCTC	1 cut(s)	316
Bsp119I	TTCGAA	1 cut(s)	526
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	42, 134
BspANI	GGCC	2 cut(s)	209, 532
BspCNI	CTCAG	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	1 cut(s)	129
BspT104I	TTCGAA	1 cut(s)	526
BspTNI	GGTCTC	1 cut(s)	316
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	312, 502
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	2 cut(s)	42, 134
Bst4CI	ACNGT	5 cut(s)	16, 228, 253, 455, 461
Bst6I	CTCTTC	1 cut(s)	187
BstAUI	TGTACA	1 cut(s)	561
BstBI	TTCGAA	1 cut(s)	526
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	2 cut(s)	45, 137
BstMAI	GTCTC	2 cut(s)	236, 316
BstMBI	GATC	2 cut(s)	42, 134
BstMCI	CGRYCG	1 cut(s)	463
BstMWI	GCNNNNNNNGC	1 cut(s)	529
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	16, 143
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	209, 532
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	2 cut(s)	233, 305
CfoI	GCGC	1 cut(s)	359
Csp6I	GTAC	3 cut(s)	384, 503, 562
CviAII	CATG	4 cut(s)	10, 34, 128, 237
CviJI	RGCY	7 cut(s)	156, 209, 329, 401, 419, 532, 574
CviKI_1	RGCY	7 cut(s)	156, 209, 329, 401, 419, 532, 574
CviQI	GTAC	3 cut(s)	384, 503, 562
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	44, 136
DpnII	GATC	2 cut(s)	42, 134
DrdI	GACNNNNNNGTC	1 cut(s)	228
DseDI	GACNNNNNNGTC	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco147I	AGGCCT	2 cut(s)	209, 532
Eco31I	GGTCTC	1 cut(s)	316
FaeI	CATG	4 cut(s)	13, 37, 131, 240
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	4 cut(s)	9, 33, 127, 236
FbaI	TGATCA	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	5, 157
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	2 cut(s)	5, 157
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	2 cut(s)	5, 157
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	209, 532
HapII	CCGG	3 cut(s)	164, 337, 482
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	4 cut(s)	13, 37, 131, 240
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	3 cut(s)	30, 170, 200
HpaII	CCGG	3 cut(s)	164, 337, 482
Hpy166II	GTNNAC	4 cut(s)	91, 106, 438, 503
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	143, 219
Hpy8I	GTNNAC	4 cut(s)	91, 106, 438, 503
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	52, 522
HpyCH4III	ACNGT	5 cut(s)	16, 228, 253, 455, 461
HpyCH4V	TGCA	7 cut(s)	4, 20, 159, 257, 275, 305, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	529
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	4 cut(s)	13, 37, 131, 240
HspAI	GCGC	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	42, 134
Lsp1109I	GCAGC	2 cut(s)	16, 143
LweI	GCATC	1 cut(s)	526
MaeIII	GTNAC	2 cut(s)	455, 546
MalI	GATC	2 cut(s)	44, 136
MboI	GATC	2 cut(s)	42, 134
MboII	GAAGA	1 cut(s)	174
MflI	RGATCY	1 cut(s)	134
MluCI	AATT	3 cut(s)	94, 268, 340
MnlI	CCTC	1 cut(s)	220
MslI	CAYNNNNRTG	2 cut(s)	84, 241
MspA1I	CMGCKG	2 cut(s)	156, 329
MspI	CCGG	3 cut(s)	164, 337, 482
MspR9I	CCNGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	529
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	2 cut(s)	42, 134
NlaIII	CATG	4 cut(s)	13, 37, 131, 240
NspI	RCATGY	1 cut(s)	240
NspV	TTCGAA	1 cut(s)	526
PceI	AGGCCT	2 cut(s)	209, 532
PfeI	GAWTC	3 cut(s)	30, 170, 200
PflFI	GACNNNGTC	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	6, 158
PstI	CTGCAG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	228
PvuII	CAGCTG	2 cut(s)	156, 329
RsaI	GTAC	3 cut(s)	385, 504, 563
RsaNI	GTAC	3 cut(s)	384, 503, 562
RseI	CAYNNNNRTG	2 cut(s)	84, 241
SatI	GCNGC	2 cut(s)	5, 157
Sau3AI	GATC	2 cut(s)	42, 134
ScrFI	CCNGG	1 cut(s)	165
SetI	ASST	4 cut(s)	158, 331, 403, 520
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	526
SmiMI	CAYNNNNRTG	2 cut(s)	84, 241
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	3 cut(s)	94, 268, 340
SseBI	AGGCCT	2 cut(s)	209, 532
StuI	AGGCCT	2 cut(s)	209, 532
StyD4I	CCNGG	1 cut(s)	163
TaaI	ACNGT	5 cut(s)	16, 228, 253, 455, 461
TaqI	TCGA	2 cut(s)	220, 526
TasI	AATT	3 cut(s)	94, 268, 340
TatI	WGTACW	1 cut(s)	561
TfiI	GAWTC	3 cut(s)	30, 170, 200
TscAI	CASTG	2 cut(s)	233, 312
TseI	GCWGC	2 cut(s)	4, 156
TspDTI	ATGAA	2 cut(s)	22, 116
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	2 cut(s)	233, 312
Tth111I	GACNNNGTC	1 cut(s)	228
XceI	RCATGY	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.