Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000432.1

Orthogroup ID

OG0010235

Physical Location & Seq

Genomic Coordinates Forward (+)

119015 .. 120187

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000432.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ctggatggaaaagacagaccacctgggtgcaggaattgtgggggaagtggagctgtgctctgtgatatgtgtggtggtactggaaaatggaaagctctcaacagaaaacgagctaaagatgtgtatgagtttacagaatgtccaaattgttacggtcgggggaaacttgtatgtcccgtatgtttagggactggtgtaccaaacaacaaaggtcttctcaggaggcctgatgcaaagcagctacttgagaagatgtacaatggtcggctagtgccaaactcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009553 GO:0009561 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0015036 GO:0015979 GO:0016020 GO:0016043 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047134 GO:0048229 GO:0048564 GO:0048856 GO:0055035 GO:0055114 GO:0061024 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.19

Weight (kDa)

9.38

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34860 AT2G34860
fragaria_vesca	FvH4_3g44571 FvH4_3g44681
malus_domestica	MD03G1011600.v1.1 MD11G1014500.v1.1
prunus_persica	Prupe.6G012000_v2.0.a1 Prupe.6G012000_v2.0.a1
pyrus_communis	pycom03g01050 pycom11g00980
rosa_chinensis	RchiOBHm_Chr5g0081351
rosa_laevigata	RLG00000036926
rosa_multiflora	Rmu_co8192032.1_g000001 Rmu_ssc0000432.1_g000028
rosa_roxburghii	Rroxscaffold_1G00002190
rosa_rugosa	Rorug05G0476000
rosa_samantha	Rh5AG527300 Rh5BG551500 Rh5CG574300 Rh5DG561400
rosa_wichuraiana	Rw5G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	79, 198, 257
AjnI	CCWGG	1 cut(s)	22
AleI	CACNNNNGTG	1 cut(s)	25
AluBI	AGCT	4 cut(s)	53, 95, 113, 241
AluI	AGCT	4 cut(s)	53, 95, 113, 241
Alw21I	GWGCWC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	238
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	269
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	206
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
BpuEI	CTTGAG	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	85, 196
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	2 cut(s)	85, 196
BseXI	GCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	226
BsiEI	CGRYCG	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	60
BslFI	GGGAC	2 cut(s)	159, 202
BsmFI	GGGAC	2 cut(s)	159, 202
BsnI	GGCC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp1407I	TGTACA	1 cut(s)	255
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	85, 196
BssECI	CCNNGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	10
BstMCI	CGRYCG	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	250
BstV2I	GAAGAC	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	10
Csp6I	GTAC	3 cut(s)	78, 197, 256
CviJI	RGCY	6 cut(s)	53, 95, 113, 226, 241, 268
CviKI_1	RGCY	6 cut(s)	53, 95, 113, 226, 241, 268
CviQI	GTAC	3 cut(s)	78, 197, 256
DdeI	CTNAG	1 cut(s)	218
Eco147I	AGGCCT	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	22
FaiI	YATR	4 cut(s)	68, 126, 172, 181
FaqI	GGGAC	2 cut(s)	159, 202
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	226
Hpy166II	GTNNAC	2 cut(s)	132, 197
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	2 cut(s)	132, 197
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	30, 233
HpyF3I	CTNAG	1 cut(s)	218
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	7 cut(s)	9, 16, 36, 66, 177, 205, 240
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	2 cut(s)	206, 262
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	2 cut(s)	34, 145
MnlI	CCTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	283
MslI	CAYNNNNRTG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
OliI	CACNNNNGTG	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
RsaI	GTAC	3 cut(s)	79, 198, 257
RsaNI	GTAC	3 cut(s)	78, 197, 256
RseI	CAYNNNNRTG	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	283
SatI	GCNGC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	6 cut(s)	25, 55, 97, 115, 214, 243
SfaNI	GCATC	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	34, 145
SseBI	AGGCCT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	269
StuI	AGGCCT	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	155
TasI	AATT	2 cut(s)	34, 145
TatI	WGTACW	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	283
Tru9I	TTAA	1 cut(s)	283
TseI	GCWGC	1 cut(s)	238
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.