Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003042

Physical Location & Seq

Genomic Coordinates Forward (+)

14748877 .. 14749878

Gene Structure 1002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAAAGTAATCTCGCCGGAGACTCAATTCCGGGACCCAAATGGAGGAAAGTAGCCTACGGAGGAATGCAAATCGGATACGACGACAATTACACAGACGAATCGTTCCTCGAGGAAATGGTGATGAACGCAAACGTAGTGAGACGTGATTTGCTCAAGGTGATGAAAGACTCTGTCTCAATCTCCCAATACCTCTGCATCGTCGCGCTTGTAGTCTTGGTTTGGGTTCACACTCTTGAATCATCTTTGGACGAGAACTCGCTTTTGCTACTTGATCTCTCTCTCTTAGCATCAGGATTCTTAATTCTCCTCTTAACCGAAGAAAAAATGTTATCTTTGAGTCTCCTCTTGCGTTACCTCGTCAACATCTCCTTCTTCACCACGGGACTTTATATCTTAGCTCCGATTTACCAGACTCTCACGCGATCTATCAGCTCAGATTCGATATGGGCAGTCACTGTTTCACTCCTCTTGCTTCATCTCTTCTTGCATGATTACTCTGGTTCCACCATTAGAGCTCCAGGAGCACTCAAAACTCCGAATTTGACAAGCTGCATATCTGTCAATGCTTCAATTGTAGCATCAGTCTTTGTTGCTTCACGTCTTCCTTCTAGGCTCCATGTCTTTGCTGTGATGCTATTCTCACTTCAAGTCTTTCTCTTTGCGCCTCTTGTTACTTACTGCATCAAGAAATTCAACTTTGGGTTGCATCTTCTCTTCTCCTTTGCTCTAATGGGTTTGACGCTTTACTCTATTTATGCATTGCATAGACTCTTCTTCCTTGTCTTTCTTTCTCTTGTGCTTCTTGTCAATGTTGTGTGTCCTTATTGGCTCATTAGGATGCAAGAGTATAAGTTTGAGATTAATGGTCCTTGGGATGAAGCCAAGCTTTGTTTCGACATTACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

GPI2

Protein Analysis

303

Amino Acids

34.2

Weight (kDa)

5.86

Isoelectric Point (pI)

29.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GPI2	PF06432	15 - 293	9.3e-80	Phosphatidylinositol N-acetylglucosaminyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34980
fragaria_vesca	FvH4_1g22930 FvH4_2g14913
malus_domestica	MD05G1011700.v1.1 MD12G1011000.v1.1
prunus_persica	Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.8G016600_v2.0.a1
pyrus_communis	pycom12g00850
rosa_chinensis	RchiOBHm_Chr3g0496061 RchiOBHm_Chr6g0277521
rosa_laevigata	RLG00000013295 RLG00000022566
rosa_multiflora	Rmu_sc0003910.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389600 Rroxscaffold_7G00191250
rosa_rugosa	Rorug03G0279300 Rorug06G0109400 Rorug06G0109500
rosa_samantha	Rh3AG326300 Rh3BG362600 Rh3CG358700 Rh3DG362000 Rh6AG219700 Rh6BG223600 Rh6CG226100 Rh6DG216500
rosa_wichuraiana	Rw3G028570 Rw6G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	110
AccII	CGCG	2 cut(s)	206, 424
AcsI	RAATTY	2 cut(s)	541, 692
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	4 cut(s)	239, 573, 650, 697
AjiI	CACGTC	2 cut(s)	146, 602
AjnI	CCWGG	1 cut(s)	520
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
AluBI	AGCT	5 cut(s)	401, 435, 518, 552, 889
AluI	AGCT	5 cut(s)	401, 435, 518, 552, 889
Alw21I	GWGCWC	2 cut(s)	520, 529
Alw26I	GTCTC	4 cut(s)	15, 136, 181, 347
AlwNI	CAGNNNCTG	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	552
ApoI	RAATTY	2 cut(s)	541, 692
AseI	ATTAAT	1 cut(s)	864
AspLEI	GCGC	2 cut(s)	208, 667
AspS9I	GGNCC	2 cut(s)	35, 869
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	3 cut(s)	133, 172, 370
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	35, 869
BanII	GRGCYC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	596
Bbv12I	GWGCWC	2 cut(s)	520, 529
BbvI	GCAGC	1 cut(s)	539
BciT130I	CCWGG	1 cut(s)	522
BciVI	GTATCC	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	4 cut(s)	15, 136, 181, 347
BfaI	CTAG	1 cut(s)	612
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	1 cut(s)	553
BlsI	GCNGC	1 cut(s)	554
Bme1390I	CCNGG	2 cut(s)	33, 522
Bme18I	GGWCC	2 cut(s)	35, 869
BmeT110I	CYCGRG	1 cut(s)	110
BmgBI	CACGTC	2 cut(s)	146, 602
BmgT120I	GGNCC	2 cut(s)	35, 869
BmiI	GGNNCC	4 cut(s)	36, 37, 505, 617
BmrFI	CCNGG	2 cut(s)	33, 522
BmsI	GCATC	7 cut(s)	207, 299, 590, 624, 693, 718, 831
BpiI	GAAGAC	1 cut(s)	596
BpmI	CTGGAG	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	381, 872
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	761
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	2 cut(s)	381, 872
BseGI	GGATG	2 cut(s)	846, 883
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	761
BseMII	CTCAG	1 cut(s)	450
BseRI	GAGGAG	3 cut(s)	299, 335, 458
BseXI	GCAGC	1 cut(s)	539
Bsh1236I	CGCG	2 cut(s)	206, 424
BsiHKAI	GWGCWC	2 cut(s)	520, 529
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	18, 32
BslFI	GGGAC	2 cut(s)	48, 399
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	4 cut(s)	15, 136, 181, 347
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	2 cut(s)	48, 399
BsmI	GAATGC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	520, 529
Bsp143I	GATC	2 cut(s)	274, 425
BspCNI	CTCAG	1 cut(s)	449
BspFNI	CGCG	2 cut(s)	206, 424
BspLI	GGNNCC	4 cut(s)	36, 37, 505, 617
BsrDI	GCAATG	1 cut(s)	761
BssECI	CCNNGG	2 cut(s)	381, 872
BssMI	GATC	2 cut(s)	274, 425
BssT1I	CCWWGG	1 cut(s)	872
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	3 cut(s)	488, 722, 779
BstDEI	CTNAG	3 cut(s)	286, 397, 436
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	846, 883
BstFNI	CGCG	2 cut(s)	206, 424
BstHHI	GCGC	2 cut(s)	208, 667
BstKTI	GATC	2 cut(s)	277, 428
BstMAI	GTCTC	4 cut(s)	15, 136, 181, 347
BstMBI	GATC	2 cut(s)	274, 425
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstNI	CCWGG	1 cut(s)	522
BstSCI	CCNGG	2 cut(s)	31, 520
BstUI	CGCG	2 cut(s)	206, 424
BstV1I	GCAGC	1 cut(s)	539
BstV2I	GAAGAC	1 cut(s)	596
BsuI	GTATCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	381
BtrI	CACGTC	2 cut(s)	146, 602
BtsCI	GGATG	2 cut(s)	846, 883
BtsIMutI	CAGTG	1 cut(s)	456
CaiI	CAGNNNCTG	1 cut(s)	458
CfoI	GCGC	2 cut(s)	208, 667
Cfr13I	GGNCC	2 cut(s)	35, 869
CseI	GACGC	1 cut(s)	751
CviAII	CATG	2 cut(s)	491, 620
CviJI	RGCY	9 cut(s)	56, 401, 435, 518, 552, 616, 832, 884, 889
CviKI_1	RGCY	9 cut(s)	56, 401, 435, 518, 552, 616, 832, 884, 889
DdeI	CTNAG	3 cut(s)	286, 397, 436
DpnI	GATC	2 cut(s)	276, 427
DpnII	GATC	2 cut(s)	274, 425
Eam1104I	CTCTTC	3 cut(s)	488, 722, 779
EarI	CTCTTC	3 cut(s)	488, 722, 779
Ecl136II	GAGCTC	1 cut(s)	518
Eco130I	CCWWGG	1 cut(s)	872
Eco24I	GRGCYC	1 cut(s)	520
Eco47I	GGWCC	2 cut(s)	35, 869
Eco53kI	GAGCTC	1 cut(s)	518
Eco88I	CYCGRG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	872
EcoT22I	ATGCAT	1 cut(s)	763
EcoT38I	GRGCYC	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	872
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	2 cut(s)	494, 623
FaiI	YATR	8 cut(s)	393, 448, 492, 557, 621, 759, 768, 852
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FaqI	GGGAC	2 cut(s)	48, 399
FatI	CATG	2 cut(s)	490, 619
Fnu4HI	GCNGC	1 cut(s)	553
FokI	GGATG	2 cut(s)	853, 890
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	1 cut(s)	553
FspBI	CTAG	1 cut(s)	612
GlaI	GCGC	2 cut(s)	207, 666
GluI	GCNGC	1 cut(s)	553
GsuI	CTGGAG	1 cut(s)	504
HapII	CCGG	2 cut(s)	18, 32
HgaI	GACGC	1 cut(s)	751
HhaI	GCGC	2 cut(s)	208, 667
Hin1II	CATG	2 cut(s)	494, 623
Hin6I	GCGC	2 cut(s)	206, 665
HinP1I	GCGC	2 cut(s)	206, 665
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	9 cut(s)	23, 101, 170, 239, 297, 340, 415, 440, 771
HpaII	CCGG	2 cut(s)	18, 32
HphI	GGTGA	3 cut(s)	133, 172, 370
Hpy166II	GTNNAC	2 cut(s)	229, 364
Hpy188I	TCNGA	4 cut(s)	77, 405, 439, 540
Hpy188III	TCNNGA	3 cut(s)	236, 294, 688
Hpy8I	GTNNAC	2 cut(s)	229, 364
Hpy99I	CGWCG	2 cut(s)	86, 206
HpyAV	CCTTC	2 cut(s)	382, 618
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	3 cut(s)	135, 145, 601
HpyCH4V	TGCA	9 cut(s)	70, 198, 490, 555, 684, 709, 761, 766, 844
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
HpyF3I	CTNAG	3 cut(s)	286, 397, 436
HpySE526I	ACGT	3 cut(s)	135, 145, 601
Hsp92II	CATG	2 cut(s)	494, 623
HspAI	GCGC	2 cut(s)	206, 665
KflI	GGGWCCC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	274, 425
LmnI	GCTCC	4 cut(s)	406, 523, 524, 621
LpnPI	CCDG	7 cut(s)	31, 45, 279, 425, 486, 507, 534
Lsp1109I	GCAGC	1 cut(s)	539
LweI	GCATC	7 cut(s)	207, 299, 590, 624, 693, 718, 831
MaeI	CTAG	1 cut(s)	612
MaeII	ACGT	3 cut(s)	135, 145, 601
MaeIII	GTNAC	3 cut(s)	353, 454, 673
MalI	GATC	2 cut(s)	276, 427
MboI	GATC	2 cut(s)	274, 425
MboII	GAAGA	8 cut(s)	332, 367, 475, 596, 704, 709, 766, 769
MfeI	CAATTG	1 cut(s)	573
MhlI	GDGCHC	2 cut(s)	520, 529
MluCI	AATT	6 cut(s)	27, 88, 303, 541, 573, 692
MlyI	GAGTC	5 cut(s)	17, 164, 349, 409, 765
Mph1103I	ATGCAT	1 cut(s)	763
MseI	TTAA	3 cut(s)	302, 314, 864
MslI	CAYNNNNRTG	1 cut(s)	839
MspI	CCGG	2 cut(s)	18, 32
MspR9I	CCNGG	2 cut(s)	33, 522
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	522
MvnI	CGCG	2 cut(s)	206, 424
MwoI	GCNNNNNNNGC	1 cut(s)	524
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	2 cut(s)	274, 425
NlaIII	CATG	2 cut(s)	494, 623
NlaIV	GGNNCC	4 cut(s)	36, 37, 505, 617
NmuCI	GTSAC	1 cut(s)	454
NsiI	ATGCAT	1 cut(s)	763
PaeR7I	CTCGAG	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	4 cut(s)	101, 239, 297, 440
PflFI	GACNNNGTC	1 cut(s)	173
PfoI	TCCNGGA	2 cut(s)	31, 520
PkrI	GCNGC	1 cut(s)	554
PleI	GAGTC	5 cut(s)	17, 164, 348, 409, 765
PpsI	GAGTC	5 cut(s)	17, 164, 348, 409, 765
PpuMI	RGGWCCY	1 cut(s)	35
PshBI	ATTAAT	1 cut(s)	864
Psp124BI	GAGCTC	1 cut(s)	520
Psp5II	RGGWCCY	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	4 cut(s)	36, 37, 505, 617
PspPI	GGNCC	2 cut(s)	35, 869
PspPPI	RGGWCCY	1 cut(s)	35
PspXI	VCTCGAGB	1 cut(s)	110
PstNI	CAGNNNCTG	1 cut(s)	458
PsyI	GACNNNGTC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	839
SacI	GAGCTC	1 cut(s)	520
SaqAI	TTAA	3 cut(s)	302, 314, 864
SatI	GCNGC	1 cut(s)	553
Sau3AI	GATC	2 cut(s)	274, 425
Sau96I	GGNCC	2 cut(s)	35, 869
SchI	GAGTC	5 cut(s)	17, 164, 349, 409, 765
ScrFI	CCNGG	2 cut(s)	33, 522
SduI	GDGCHC	2 cut(s)	520, 529
SfaNI	GCATC	7 cut(s)	207, 299, 590, 624, 693, 718, 831
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	2 cut(s)	35, 869
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	839
SmlI	CTYRAG	2 cut(s)	110, 155
SmoI	CTYRAG	2 cut(s)	110, 155
Sse9I	AATT	6 cut(s)	27, 88, 303, 541, 573, 692
SspMI	CTAG	1 cut(s)	612
SstI	GAGCTC	1 cut(s)	520
StyD4I	CCNGG	2 cut(s)	31, 520
StyI	CCWWGG	1 cut(s)	872
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	3 cut(s)	138, 148, 604
TaqI	TCGA	3 cut(s)	111, 443, 897
TasI	AATT	6 cut(s)	27, 88, 303, 541, 573, 692
TfiI	GAWTC	4 cut(s)	101, 239, 297, 440
Tru1I	TTAA	3 cut(s)	302, 314, 864
Tru9I	TTAA	3 cut(s)	302, 314, 864
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	552
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	4 cut(s)	140, 179, 467, 894
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	463
Tth111I	GACNNNGTC	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	35, 869
VspI	ATTAAT	1 cut(s)	864
XapI	RAATTY	2 cut(s)	541, 692
XhoI	CTCGAG	1 cut(s)	110
XspI	CTAG	1 cut(s)	612
Zsp2I	ATGCAT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.