Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003042

Physical Location & Seq

Genomic Coordinates Forward (+)

13111984 .. 13112880

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14913.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAGAGCGAGGTGATGACCTCTCCTACATGGAGAAAAGTTGCATACGGAGGCATGCAACCCGGGTTTGACGACAACCACACGGACGACTCATTCCTCGAAGAAATGGTGATGAATGCCAACGTTGTCAAACGTGACATTCTCAAAGTCATGCTCGACTCTGTCTGCATATCCCAGTACCTCTGCATTGTCGCTCTCGTAGGTTTGGTTTGGACTTACACTCTCAGATCAATCCTCAACGAAAACTCACTCTTGCTTCTTGACGTCACCCTTCTCGGTTTAGGGTTCCTCGTTCTGCTTCTAACTAAAGAAATGCTCTCCTTCAATCTCTTCTTGCGTTACTTGCTCAACATTTCGTTTTTCATTAGTGGTTTGTATGTTTTGGCTCCAATATACCAGACACTCACCACTTCCATAAGCTCAAATTCGATTTGGGCCGTCACGGTTGCGCTGCTTGTGTTGCATTTGTTCCTGCATGACTACTTTGGCTCCACTGTCAGGGCTCCCGGGGCTCTGCACAATCCCACACTGACAAGTTGTATCTCCTTGAATGCTTCTGTTGTGGCCTCGGTGTTCATTGCTTCTTGCCTCCGGTCCAGGCTGCAGGTTTTTGCAATCATGTTGTTCTCTCTGCAAGTGTTCCTTTTCGCTCCGTTGGTTACTTACTGTATTAAGAAGTATTCGTTCCGTTTGCATCTTTGGTTTTCTTTCGGGCTGATGATTGCTACATTGGTGCTTGTTTATACCCTGCATTTGTTGCTTTTTGTGATGTTGTTAGGATTGTTGGTTTTTGTCACTGTGGTTTGTCCGTATTGGCTGATCCGGATGCAAGAATATAAGTTTGAGATAAAGGGTCCTTGGGATGAGGCTAAGCTATGCTTTGATATCACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

GPI2

Protein Analysis

299

Amino Acids

33.84

Weight (kDa)

6.29

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GPI2	PF06432	11 - 288	8.5e-73	Phosphatidylinositol N-acetylglucosaminyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34980
fragaria_vesca	FvH4_1g22930 FvH4_2g14913
malus_domestica	MD05G1011700.v1.1 MD12G1011000.v1.1
prunus_persica	Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.8G016600_v2.0.a1
pyrus_communis	pycom12g00850
rosa_chinensis	RchiOBHm_Chr3g0496061 RchiOBHm_Chr6g0277521
rosa_laevigata	RLG00000013295 RLG00000022566
rosa_multiflora	Rmu_sc0003910.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389600 Rroxscaffold_7G00191250
rosa_rugosa	Rorug03G0279300 Rorug06G0109400 Rorug06G0109500
rosa_samantha	Rh3AG326300 Rh3BG362600 Rh3CG358700 Rh3DG362000 Rh6AG219700 Rh6BG223600 Rh6CG226100 Rh6DG216500
rosa_wichuraiana	Rw3G028570 Rw6G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	267
Acc36I	ACCTGC	1 cut(s)	595
AccIII	TCCGGA	1 cut(s)	822
AclI	AACGTT	1 cut(s)	123
AclWI	GGATC	1 cut(s)	814
AcsI	RAATTY	1 cut(s)	424
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	498
AgsI	TTSAA	2 cut(s)	325, 550
AjnI	CCWGG	1 cut(s)	596
AluBI	AGCT	2 cut(s)	420, 874
AluI	AGCT	2 cut(s)	420, 874
AlwI	GGATC	1 cut(s)	814
Ama87I	CYCGRG	2 cut(s)	62, 506
Aor13HI	TCCGGA	1 cut(s)	822
AoxI	GGCC	2 cut(s)	435, 564
ApeKI	GCWGC	2 cut(s)	451, 601
ApoI	RAATTY	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	3 cut(s)	435, 594, 854
AsuC2I	CCSGG	4 cut(s)	63, 64, 507, 508
AsuHPI	GGTGA	4 cut(s)	25, 121, 259, 397
AvaI	CYCGRG	2 cut(s)	62, 506
AvaII	GGWCC	2 cut(s)	594, 854
BanII	GRGCYC	2 cut(s)	505, 514
BbvI	GCAGC	2 cut(s)	438, 588
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	598
BcnI	CCSGG	4 cut(s)	63, 64, 507, 508
BfmI	CTRYAG	1 cut(s)	602
BfuAI	ACCTGC	1 cut(s)	595
BisI	GCNGC	2 cut(s)	452, 602
BlpI	GCTNAGC	1 cut(s)	870
BlsI	GCNGC	2 cut(s)	453, 603
Bme1390I	CCNGG	5 cut(s)	63, 64, 507, 508, 598
Bme18I	GGWCC	2 cut(s)	594, 854
BmeT110I	CYCGRG	2 cut(s)	62, 506
BmgT120I	GGNCC	3 cut(s)	435, 594, 854
BmiI	GGNNCC	5 cut(s)	287, 387, 490, 504, 855
BmrFI	CCNGG	5 cut(s)	63, 64, 507, 508, 598
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	703, 816
BmuI	ACTGGG	1 cut(s)	169
Bpu1102I	GCTNAGC	1 cut(s)	870
BpuMI	CCSGG	4 cut(s)	63, 64, 507, 508
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	5 cut(s)	62, 506, 507, 567, 857
BsaWI	WCCGGW	2 cut(s)	591, 822
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	1 cut(s)	498
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	576
BseAI	TCCGGA	1 cut(s)	822
BseBI	CCWGG	1 cut(s)	598
BseDI	CCNNGG	5 cut(s)	62, 506, 507, 567, 857
BseGI	GGATG	2 cut(s)	831, 868
BseLI	CCNNNNNNNGG	1 cut(s)	498
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	438, 588
BsgI	GTGCAG	1 cut(s)	500
BshFI	GGCC	2 cut(s)	437, 566
BsiHKCI	CYCGRG	2 cut(s)	62, 506
BsiSI	CCGG	4 cut(s)	63, 507, 592, 823
BslI	CCNNNNNNNGG	1 cut(s)	498
BsmI	GAATGC	2 cut(s)	121, 556
BsnI	GGCC	2 cut(s)	437, 566
BsoBI	CYCGRG	2 cut(s)	62, 506
Bsp1286I	GDGCHC	2 cut(s)	505, 514
Bsp13I	TCCGGA	1 cut(s)	822
Bsp143I	GATC	2 cut(s)	227, 819
Bsp1720I	GCTNAGC	1 cut(s)	870
BspANI	GGCC	2 cut(s)	437, 566
BspCNI	CTCAG	1 cut(s)	237
BspEI	TCCGGA	1 cut(s)	822
BspLI	GGNNCC	5 cut(s)	287, 387, 490, 504, 855
BspMAI	CTGCAG	1 cut(s)	606
BspMI	ACCTGC	1 cut(s)	595
BspPI	GGATC	1 cut(s)	814
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	5 cut(s)	62, 506, 507, 567, 857
BssMI	GATC	2 cut(s)	227, 819
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	857
Bst2UI	CCWGG	1 cut(s)	598
Bst4CI	ACNGT	4 cut(s)	445, 496, 668, 799
Bst6I	CTCTTC	1 cut(s)	335
BstACI	GRCGYC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	757
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	2 cut(s)	224, 870
BstF5I	GGATG	2 cut(s)	831, 868
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	2 cut(s)	230, 822
BstMBI	GATC	2 cut(s)	227, 819
BstMWI	GCNNNNNNNGC	4 cut(s)	343, 460, 509, 757
BstNI	CCWGG	1 cut(s)	598
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	5 cut(s)	61, 62, 505, 506, 596
BstSFI	CTRYAG	1 cut(s)	602
BstV1I	GCAGC	2 cut(s)	438, 588
BsuRI	GGCC	2 cut(s)	437, 566
BtsCI	GGATG	2 cut(s)	831, 868
BtsIMutI	CAGTG	3 cut(s)	492, 527, 795
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	1 cut(s)	56
CfoI	GCGC	1 cut(s)	451
Cfr13I	GGNCC	3 cut(s)	435, 594, 854
Cfr9I	CCCGGG	2 cut(s)	62, 506
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	5 cut(s)	30, 55, 151, 476, 619
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	224, 870
DpnI	GATC	2 cut(s)	229, 821
DpnII	GATC	2 cut(s)	227, 819
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	857
Eco24I	GRGCYC	2 cut(s)	505, 514
Eco32I	GATATC	1 cut(s)	886
Eco47I	GGWCC	2 cut(s)	594, 854
Eco88I	CYCGRG	2 cut(s)	62, 506
EcoO109I	RGGNCCY	1 cut(s)	854
EcoRII	CCWGG	1 cut(s)	596
EcoRV	GATATC	1 cut(s)	886
EcoT14I	CCWWGG	1 cut(s)	857
EcoT38I	GRGCYC	2 cut(s)	505, 514
ErhI	CCWWGG	1 cut(s)	857
FaeI	CATG	5 cut(s)	33, 58, 154, 479, 622
FalI	AAGNNNNNCTT	4 cut(s)	627, 659, 863, 895
FatI	CATG	5 cut(s)	29, 54, 150, 475, 618
Fnu4HI	GCNGC	2 cut(s)	452, 602
FokI	GGATG	2 cut(s)	838, 875
FriOI	GRGCYC	2 cut(s)	505, 514
Fsp4HI	GCNGC	2 cut(s)	452, 602
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	2 cut(s)	452, 602
HaeIII	GGCC	2 cut(s)	437, 566
HapII	CCGG	4 cut(s)	63, 507, 592, 823
HhaI	GCGC	1 cut(s)	451
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	5 cut(s)	33, 58, 154, 479, 622
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HinfI	GANTC	2 cut(s)	89, 158
HpaII	CCGG	4 cut(s)	63, 507, 592, 823
HphI	GGTGA	4 cut(s)	25, 121, 259, 397
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	2 cut(s)	260, 823
HpyAV	CCTTC	2 cut(s)	281, 331
HpyCH4III	ACNGT	4 cut(s)	445, 496, 668, 799
HpyCH4IV	ACGT	3 cut(s)	123, 133, 264
HpyF10VI	GCNNNNNNNGC	4 cut(s)	343, 460, 509, 757
HpyF3I	CTNAG	2 cut(s)	224, 870
HpySE526I	ACGT	3 cut(s)	123, 133, 264
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	5 cut(s)	33, 58, 154, 479, 622
HspAI	GCGC	1 cut(s)	449
Kpn2I	TCCGGA	1 cut(s)	822
Kzo9I	GATC	2 cut(s)	227, 819
LmnI	GCTCC	4 cut(s)	391, 494, 508, 655
Lsp1109I	GCAGC	2 cut(s)	438, 588
LweI	GCATC	2 cut(s)	703, 816
MaeII	ACGT	3 cut(s)	123, 133, 264
MaeIII	GTNAC	6 cut(s)	134, 265, 338, 439, 658, 793
MalI	GATC	2 cut(s)	229, 821
MboI	GATC	2 cut(s)	227, 819
MboII	GAAGA	2 cut(s)	113, 322
MhlI	GDGCHC	2 cut(s)	505, 514
MluCI	AATT	1 cut(s)	424
MlyI	GAGTC	2 cut(s)	83, 152
MroI	TCCGGA	1 cut(s)	822
MseI	TTAA	1 cut(s)	672
MspI	CCGG	4 cut(s)	63, 507, 592, 823
MspR9I	CCNGG	5 cut(s)	63, 64, 507, 508, 598
Mva1269I	GAATGC	2 cut(s)	121, 556
MvaI	CCWGG	1 cut(s)	598
MwoI	GCNNNNNNNGC	4 cut(s)	343, 460, 509, 757
NciI	CCSGG	4 cut(s)	63, 64, 507, 508
NdeII	GATC	2 cut(s)	227, 819
NlaIII	CATG	5 cut(s)	33, 58, 154, 479, 622
NlaIV	GGNNCC	5 cut(s)	287, 387, 490, 504, 855
NmuCI	GTSAC	4 cut(s)	134, 265, 439, 793
NspI	RCATGY	1 cut(s)	58
PaeI	GCATGC	1 cut(s)	58
PctI	GAATGC	2 cut(s)	121, 556
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	453, 603
PleI	GAGTC	2 cut(s)	83, 152
PpsI	GAGTC	2 cut(s)	83, 152
PpuMI	RGGWCCY	1 cut(s)	854
Psp1406I	AACGTT	1 cut(s)	123
Psp5II	RGGWCCY	1 cut(s)	854
Psp6I	CCWGG	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	596
PspN4I	GGNNCC	5 cut(s)	287, 387, 490, 504, 855
PspPI	GGNCC	3 cut(s)	435, 594, 854
PspPPI	RGGWCCY	1 cut(s)	854
PstI	CTGCAG	1 cut(s)	606
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	2 cut(s)	452, 602
Sau3AI	GATC	2 cut(s)	227, 819
Sau96I	GGNCC	3 cut(s)	435, 594, 854
SchI	GAGTC	2 cut(s)	83, 152
ScrFI	CCNGG	5 cut(s)	63, 64, 507, 508, 598
SduI	GDGCHC	2 cut(s)	505, 514
SfaNI	GCATC	2 cut(s)	703, 816
SfcI	CTRYAG	1 cut(s)	602
SinI	GGWCC	2 cut(s)	594, 854
SmaI	CCCGGG	2 cut(s)	64, 508
SphI	GCATGC	1 cut(s)	58
Sse9I	AATT	1 cut(s)	424
StyD4I	CCNGG	5 cut(s)	61, 62, 505, 506, 596
StyI	CCWWGG	1 cut(s)	857
TaaI	ACNGT	4 cut(s)	445, 496, 668, 799
TaiI	ACGT	3 cut(s)	126, 136, 267
TaqI	TCGA	3 cut(s)	99, 156, 428
TasI	AATT	1 cut(s)	424
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	3 cut(s)	499, 534, 802
TseFI	GTSAC	4 cut(s)	134, 265, 439, 793
TseI	GCWGC	2 cut(s)	451, 601
Tsp45I	GTSAC	4 cut(s)	134, 265, 439, 793
TspDTI	ATGAA	3 cut(s)	128, 352, 565
TspGWI	ACGGA	5 cut(s)	63, 98, 642, 677, 798
TspMI	CCCGGG	2 cut(s)	62, 506
TspRI	CASTG	3 cut(s)	499, 534, 802
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	594, 854
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	1 cut(s)	58
XmaI	CCCGGG	2 cut(s)	62, 506
ZraI	GACGTC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.