Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003042

Physical Location & Seq

Genomic Coordinates Reverse (-)

3521505 .. 3522371

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAAAAAAGTGGTTTATGGGGGATGCAACCTGGTTTTGATGACAATCACACAGATGAATCTTTTCTTGAAGATATGGTCACTAATGCCAATGTGGTTAAAAGGGACTTGCTAAAAGTGATGCAGGATTCAGTGTCCATCTCCCAATATTTGTGCATTGTAGCTCTAATCGGGTTGGTTTGGATCTACACCCTAAGATCAACTCTTAATGAAAATTCACTTTTACTTCTTGATGTCACCCTTCTTGGGTTGGGTTTTCTTATTCTCCTTTTAACTCAAGAAATGTTATCCCTCAATCTGTTCTTGCATTACCTCCTCAATGTTTCCTTTTTCACCTCTGGCCTGTATCTTTTGGCTCCTATCTATCAAACTCTTACAAGATCCATTAGCTCAGACTCCATTTTGGCAGTAACAGTTTCACTACTTTTGCTCCATCTTTTCTTCCATGACTACTTCGGATCCACTGTAAGAACACTTGGTGCTCTAAACAGTCCAACATTGACAAGTTGCATTTCTTTAAATGCTTCTATTGTGGCCTCCGTTTTTATTGCATCCCGCCTTCCATCAACTCTGCTTGTTTTTGCAATCATGCACTTCTCTTTGCAAGTTTTCCTTTTCGCTCCATTGGTTACTTACTGTATTAAGAAATATTCCTTCCGTTTGCACATGTGGTTTTCTTTTGGTCTGATGATTGCCACCTTGGCCCTTGTTTATACCTTGCACCTATTTATTTTTGTGATGTTCTTAGGGTTGTTGATTATTGTATCAGTTGTCTGTCCATACTGGCTCATACAGATGCAGGAATACAAATTTGAGATCCATGGTCCCTGGGATGAGGCTAAGCTCTGTTTTGATATAATAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

GPI2

Protein Analysis

288

Amino Acids

32.67

Weight (kDa)

5.52

Isoelectric Point (pI)

28.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GPI2	PF06432	6 - 278	7.8e-73	Phosphatidylinositol N-acetylglucosaminyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34980
fragaria_vesca	FvH4_1g22930 FvH4_2g14913
malus_domestica	MD05G1011700.v1.1 MD12G1011000.v1.1
prunus_persica	Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.8G016600_v2.0.a1
pyrus_communis	pycom12g00850
rosa_chinensis	RchiOBHm_Chr3g0496061 RchiOBHm_Chr6g0277521
rosa_laevigata	RLG00000013295 RLG00000022566
rosa_multiflora	Rmu_sc0003910.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389600 Rroxscaffold_7G00191250
rosa_rugosa	Rorug03G0279300 Rorug06G0109400 Rorug06G0109500
rosa_samantha	Rh3AG326300 Rh3BG362600 Rh3CG358700 Rh3DG362000 Rh6AG219700 Rh6BG223600 Rh6CG226100 Rh6DG216500
rosa_wichuraiana	Rw3G028570 Rw6G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	556
AclWI	GGATC	5 cut(s)	191, 375, 453, 466, 811
AcsI	RAATTY	2 cut(s)	214, 809
AdeI	CACNNNGTG	1 cut(s)	479
AfiI	CCNNNNNNNGG	1 cut(s)	246
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	2 cut(s)	31, 827
AluBI	AGCT	3 cut(s)	164, 390, 844
AluI	AGCT	3 cut(s)	164, 390, 844
Alw21I	GWGCWC	1 cut(s)	484
AlwI	GGATC	5 cut(s)	191, 375, 453, 466, 811
AoxI	GGCC	3 cut(s)	340, 534, 702
ApoI	RAATTY	2 cut(s)	214, 809
Asp700I	GAANNNNTTC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	703, 824
AsuHPI	GGTGA	2 cut(s)	229, 325
AvaII	GGWCC	1 cut(s)	824
BamHI	GGATCC	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	484
BccI	CCATC	3 cut(s)	146, 441, 571
BciT130I	CCWGG	2 cut(s)	33, 829
BglI	GCCNNNNNGGC	1 cut(s)	701
BlpI	GCTNAGC	1 cut(s)	840
Bme1390I	CCNGG	2 cut(s)	33, 829
Bme18I	GGWCC	1 cut(s)	824
BmgT120I	GGNCC	2 cut(s)	703, 824
BmiI	GGNNCC	3 cut(s)	357, 460, 826
BmrFI	CCNGG	2 cut(s)	33, 829
BmsI	GCATC	4 cut(s)	15, 111, 560, 786
Bpu1102I	GCTNAGC	1 cut(s)	840
BpuEI	CTTGAG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	45
BsaJI	CCNNGG	4 cut(s)	699, 820, 827, 828
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	788
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	33, 829
BseDI	CCNNGG	4 cut(s)	699, 820, 827, 828
BseGI	GGATG	3 cut(s)	30, 551, 838
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	1 cut(s)	788
BseRI	GAGGAG	1 cut(s)	305
BshFI	GGCC	3 cut(s)	342, 536, 704
BsiHKAI	GWGCWC	1 cut(s)	484
BslFI	GGGAC	2 cut(s)	119, 810
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmFI	GGGAC	2 cut(s)	119, 810
BsnI	GGCC	3 cut(s)	342, 536, 704
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp143I	GATC	5 cut(s)	183, 197, 380, 458, 816
Bsp1720I	GCTNAGC	1 cut(s)	840
Bsp19I	CCATGG	1 cut(s)	820
BspACI	CCGC	1 cut(s)	556
BspANI	GGCC	3 cut(s)	342, 536, 704
BspCNI	CTCAG	1 cut(s)	404
BspLI	GGNNCC	3 cut(s)	357, 460, 826
BspPI	GGATC	5 cut(s)	191, 375, 453, 466, 811
BsrI	ACTGG	1 cut(s)	788
BssECI	CCNNGG	4 cut(s)	699, 820, 827, 828
BssMI	GATC	5 cut(s)	183, 197, 380, 458, 816
BssT1I	CCWWGG	2 cut(s)	699, 820
Bst2UI	CCWGG	2 cut(s)	33, 829
Bst4CI	ACNGT	4 cut(s)	415, 466, 491, 638
BstDEI	CTNAG	4 cut(s)	194, 391, 745, 840
BstDSI	CCRYGG	1 cut(s)	820
BstF5I	GGATG	3 cut(s)	30, 551, 838
BstKTI	GATC	5 cut(s)	186, 200, 383, 461, 819
BstMBI	GATC	5 cut(s)	183, 197, 380, 458, 816
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstNI	CCWGG	2 cut(s)	33, 829
BstNSI	RCATGY	1 cut(s)	670
BstSCI	CCNGG	2 cut(s)	31, 827
BstX2I	RGATCY	4 cut(s)	183, 380, 458, 816
BstYI	RGATCY	4 cut(s)	183, 380, 458, 816
BsuRI	GGCC	3 cut(s)	342, 536, 704
BtgI	CCRYGG	1 cut(s)	820
BtsCI	GGATG	3 cut(s)	30, 551, 838
BtsIMutI	CAGTG	2 cut(s)	138, 462
Cfr13I	GGNCC	2 cut(s)	703, 824
CsiI	ACCWGGT	1 cut(s)	31
CviAII	CATG	4 cut(s)	446, 589, 667, 821
CviJI	RGCY	9 cut(s)	164, 342, 356, 390, 536, 704, 787, 839, 844
CviKI_1	RGCY	9 cut(s)	164, 342, 356, 390, 536, 704, 787, 839, 844
DdeI	CTNAG	4 cut(s)	194, 391, 745, 840
DpnI	GATC	5 cut(s)	185, 199, 382, 460, 818
DpnII	GATC	5 cut(s)	183, 197, 380, 458, 816
DraI	TTTAAA	1 cut(s)	519
DraIII	CACNNNGTG	1 cut(s)	479
Eco130I	CCWWGG	2 cut(s)	699, 820
Eco47I	GGWCC	1 cut(s)	824
EcoRII	CCWGG	2 cut(s)	31, 827
EcoT14I	CCWWGG	2 cut(s)	699, 820
ErhI	CCWWGG	2 cut(s)	699, 820
FaeI	CATG	4 cut(s)	449, 592, 670, 824
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	2 cut(s)	119, 810
FatI	CATG	4 cut(s)	445, 588, 666, 820
FauI	CCCGC	1 cut(s)	563
FokI	GGATG	3 cut(s)	37, 538, 845
HaeIII	GGCC	3 cut(s)	342, 536, 704
Hin1II	CATG	4 cut(s)	449, 592, 670, 824
HinfI	GANTC	3 cut(s)	59, 128, 395
HphI	GGTGA	2 cut(s)	229, 325
Hpy188I	TCNGA	3 cut(s)	394, 458, 687
Hpy188III	TCNNGA	3 cut(s)	68, 230, 278
HpyAV	CCTTC	3 cut(s)	251, 569, 664
HpyCH4III	ACNGT	4 cut(s)	415, 466, 491, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	4 cut(s)	194, 391, 745, 840
Hsp92II	CATG	4 cut(s)	449, 592, 670, 824
Kzo9I	GATC	5 cut(s)	183, 197, 380, 458, 816
LmnI	GCTCC	3 cut(s)	361, 435, 625
LpnPI	CCDG	9 cut(s)	18, 45, 110, 324, 356, 769, 785, 814, 841
LweI	GCATC	4 cut(s)	15, 111, 560, 786
MabI	ACCWGGT	1 cut(s)	31
MaeIII	GTNAC	4 cut(s)	79, 235, 409, 628
MalI	GATC	5 cut(s)	185, 199, 382, 460, 818
MboI	GATC	5 cut(s)	183, 197, 380, 458, 816
MboII	GAAGA	2 cut(s)	83, 433
MflI	RGATCY	4 cut(s)	183, 380, 458, 816
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	2 cut(s)	214, 809
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	6 cut(s)	302, 323, 326, 346, 547, 829
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	5 cut(s)	99, 207, 272, 518, 642
MslI	CAYNNNNRTG	2 cut(s)	54, 794
MspR9I	CCNGG	2 cut(s)	33, 829
MvaI	CCWGG	2 cut(s)	33, 829
MwoI	GCNNNNNNNGC	1 cut(s)	701
NcoI	CCATGG	1 cut(s)	820
NdeII	GATC	5 cut(s)	183, 197, 380, 458, 816
NlaIII	CATG	4 cut(s)	449, 592, 670, 824
NlaIV	GGNNCC	3 cut(s)	357, 460, 826
NmuCI	GTSAC	2 cut(s)	79, 235
NspI	RCATGY	1 cut(s)	670
PasI	CCCWGGG	1 cut(s)	828
PciI	ACATGT	1 cut(s)	666
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	59, 128
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PscI	ACATGT	1 cut(s)	666
Psp6I	CCWGG	2 cut(s)	31, 827
PspGI	CCWGG	2 cut(s)	31, 827
PspN4I	GGNNCC	3 cut(s)	357, 460, 826
PspPI	GGNCC	2 cut(s)	703, 824
PsuI	RGATCY	4 cut(s)	183, 380, 458, 816
RseI	CAYNNNNRTG	2 cut(s)	54, 794
SaqAI	TTAA	5 cut(s)	99, 207, 272, 518, 642
Sau3AI	GATC	5 cut(s)	183, 197, 380, 458, 816
Sau96I	GGNCC	2 cut(s)	703, 824
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	33, 829
SduI	GDGCHC	1 cut(s)	484
SetI	ASST	9 cut(s)	34, 166, 315, 338, 392, 701, 719, 726, 846
SexAI	ACCWGGT	1 cut(s)	31
SfaNI	GCATC	4 cut(s)	15, 111, 560, 786
SinI	GGWCC	1 cut(s)	824
SmiMI	CAYNNNNRTG	2 cut(s)	54, 794
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	2 cut(s)	214, 809
SsiI	CCGC	1 cut(s)	556
SspI	AATATT	2 cut(s)	149, 650
StyD4I	CCNGG	2 cut(s)	31, 827
StyI	CCWWGG	2 cut(s)	699, 820
TaaI	ACNGT	4 cut(s)	415, 466, 491, 638
TasI	AATT	2 cut(s)	214, 809
TfiI	GAWTC	2 cut(s)	59, 128
Tru1I	TTAA	5 cut(s)	99, 207, 272, 518, 642
Tru9I	TTAA	5 cut(s)	99, 207, 272, 518, 642
TscAI	CASTG	2 cut(s)	138, 469
TseFI	GTSAC	2 cut(s)	79, 235
Tsp45I	GTSAC	2 cut(s)	79, 235
TspDTI	ATGAA	2 cut(s)	72, 225
TspGWI	ACGGA	2 cut(s)	529, 647
TspRI	CASTG	2 cut(s)	138, 469
VpaK11BI	GGWCC	1 cut(s)	824
XapI	RAATTY	2 cut(s)	214, 809
XceI	RCATGY	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.