Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003042

Physical Location & Seq

Genomic Coordinates Reverse (-)

1778585 .. 1781161

Gene Structure 2577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G012900.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATACCGGCATTACTGAAAGGACATCTCCTGCCCAAGCCAAATGGAGAAAAGTGGCCTACGGAGGGATGCAACCTGGGTTCGATGACAATCACACTGATGAATCTTTTCTTGAAGAGATGGTCACAAATGCCAATGTGGGCAAAAGGGACATGCTAAAAGTGATGCAAGATTCAGTTTCCATCGCCCAATATCTGTGCATTGTAGCTCTCATTGGTTTGGTTTGGATATACACCCTCAAATCAACTCTTAATGAAAATTCCCTTTTGCTTCTTGATGTCACCCTTCTTGGATTGGGTTTTCTTATACTCCTCCTCACTCAAGAAATGTTTTCCCTCAATCTTCTCTTCCATTACTTCCTCAATATTTCTTTCTTTACCACGGGCTTATATCTTCTGGCTCCCATTTATCAAACTCTTACAAGATCAATTAGCTCAGACTCCATCTGGGCAGTAACAGTTTCACTCCTTGTGCTTCATCTTTTCCTCCATGACTACTTTGGATCCACCATAAGAACCCTAGGGGCTGCAAGCAATCCAACATTGACAAGTTGCATCTCTTTAAATGCTTCTGTTGTGGCCTCAGTTTTTATTGCTTCACGCCTTCCGTCAAGTCAGCTTGTGTTTGCCATGATGCTCTTCTCCTTGCAAGTTTTCCTTTTTGCTCCATTGGTTACTTACTGTATCAGGAAGTATTCCTTCCGTCTGCACCTTTGGTGTTCTTTTGGTCTGATGATTGCGACCTTGGCTTTGGTTTATACCCTGCACTTGTTTCTTTTTGTCGTGTTTTTAGGGTTGTTGGTTTTTGTAACTGTGGTCTGTCCATACTGGCTTATACGAATGCAAGAATACAAATTTGAGATAAATGGCCCTTGGGATGAGGCTAAGCTTTGTTTTGATATAATAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

GPI2

Protein Analysis

304

Amino Acids

34.28

Weight (kDa)

5.84

Isoelectric Point (pI)

24.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34980
fragaria_vesca	FvH4_1g22930 FvH4_2g14913
malus_domestica	MD05G1011700.v1.1 MD12G1011000.v1.1
prunus_persica	Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.8G016600_v2.0.a1
pyrus_communis	pycom12g00850
rosa_chinensis	RchiOBHm_Chr3g0496061 RchiOBHm_Chr6g0277521
rosa_laevigata	RLG00000013295 RLG00000022566
rosa_multiflora	Rmu_sc0003910.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389600 Rroxscaffold_7G00191250
rosa_rugosa	Rorug03G0279300 Rorug06G0109400 Rorug06G0109500
rosa_samantha	Rh3AG326300 Rh3BG362600 Rh3CG358700 Rh3DG362000 Rh6AG219700 Rh6BG223600 Rh6CG226100 Rh6DG216500
rosa_wichuraiana	Rw3G028570 Rw6G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	498, 511
AcsI	RAATTY	2 cut(s)	259, 854
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	4 cut(s)	209, 435, 619, 889
AluI	AGCT	4 cut(s)	209, 435, 619, 889
AlwI	GGATC	2 cut(s)	498, 511
AoxI	GGCC	3 cut(s)	57, 579, 868
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	2 cut(s)	259, 854
ArsI	GACNNNNNNTTYG	2 cut(s)	733, 765
Asp700I	GAANNNNTTC	1 cut(s)	108
AspA2I	CCTAGG	1 cut(s)	520
AspS9I	GGNCC	1 cut(s)	869
AsuHPI	GGTGA	1 cut(s)	274
AvrII	CCTAGG	1 cut(s)	520
BamHI	GGATCC	1 cut(s)	503
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	3 cut(s)	115, 191, 452
BciT130I	CCWGG	1 cut(s)	78
BfaI	CTAG	1 cut(s)	521
BisI	GCNGC	1 cut(s)	528
BlnI	CCTAGG	1 cut(s)	520
BlpI	GCTNAGC	1 cut(s)	885
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	869
BmiI	GGNNCC	2 cut(s)	402, 505
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	4 cut(s)	60, 156, 564, 624
Bpu1102I	GCTNAGC	1 cut(s)	885
BpuEI	CTTGAG	1 cut(s)	306
BsaBI	GATNNNNATC	1 cut(s)	90
BsaJI	CCNNGG	5 cut(s)	77, 381, 520, 744, 872
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	833
Bse8I	GATNNNNATC	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	5 cut(s)	77, 381, 520, 744, 872
BseGI	GGATG	2 cut(s)	75, 883
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	450, 597
BseNI	ACTGG	1 cut(s)	833
BseRI	GAGGAG	2 cut(s)	302, 305
BseXI	GCAGC	1 cut(s)	514
BsgI	GTGCAG	2 cut(s)	692, 749
BshFI	GGCC	3 cut(s)	59, 581, 870
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	846
BsnI	GGCC	3 cut(s)	59, 581, 870
Bsp143I	GATC	2 cut(s)	425, 503
Bsp1720I	GCTNAGC	1 cut(s)	885
BspANI	GGCC	3 cut(s)	59, 581, 870
BspCNI	CTCAG	2 cut(s)	449, 596
BspLI	GGNNCC	2 cut(s)	402, 505
BspPI	GGATC	2 cut(s)	498, 511
BspQI	GCTCTTC	1 cut(s)	644
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	833
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	5 cut(s)	77, 381, 520, 744, 872
BssMI	GATC	2 cut(s)	425, 503
BssT1I	CCWWGG	3 cut(s)	520, 744, 872
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	460, 683, 814
Bst6I	CTCTTC	3 cut(s)	111, 353, 644
BstC8I	GCNNGC	1 cut(s)	532
BstDEI	CTNAG	3 cut(s)	436, 583, 885
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	75, 883
BstKTI	GATC	2 cut(s)	428, 506
BstMBI	GATC	2 cut(s)	425, 503
BstMWI	GCNNNNNNNGC	1 cut(s)	746
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	514
BstX2I	RGATCY	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	503
BsuRI	GGCC	3 cut(s)	59, 581, 870
BtgI	CCRYGG	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	75, 883
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	532
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	869
CviAII	CATG	3 cut(s)	154, 491, 631
DdeI	CTNAG	3 cut(s)	436, 583, 885
DpnI	GATC	2 cut(s)	427, 505
DpnII	GATC	2 cut(s)	425, 503
DraI	TTTAAA	1 cut(s)	564
Eam1104I	CTCTTC	3 cut(s)	111, 353, 644
EarI	CTCTTC	3 cut(s)	111, 353, 644
Eco130I	CCWWGG	3 cut(s)	520, 744, 872
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	3 cut(s)	520, 744, 872
ErhI	CCWWGG	3 cut(s)	520, 744, 872
FaeI	CATG	3 cut(s)	157, 494, 634
FalI	AAGNNNNNCTT	4 cut(s)	642, 674, 683, 715
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	3 cut(s)	153, 490, 630
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	2 cut(s)	82, 890
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	1 cut(s)	521
GluI	GCNGC	1 cut(s)	528
HaeIII	GGCC	3 cut(s)	59, 581, 870
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	3 cut(s)	157, 494, 634
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	3 cut(s)	104, 173, 440
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	274
Hpy188I	TCNGA	2 cut(s)	439, 732
Hpy188III	TCNNGA	4 cut(s)	113, 275, 323, 688
HpyAV	CCTTC	3 cut(s)	296, 614, 709
HpyCH4III	ACNGT	3 cut(s)	460, 683, 814
HpyCH4V	TGCA	9 cut(s)	73, 169, 201, 530, 555, 649, 709, 766, 844
HpyF10VI	GCNNNNNNNGC	1 cut(s)	746
HpyF3I	CTNAG	3 cut(s)	436, 583, 885
Hsp92II	CATG	3 cut(s)	157, 494, 634
Kzo9I	GATC	2 cut(s)	425, 503
LguI	GCTCTTC	1 cut(s)	644
LmnI	GCTCC	2 cut(s)	406, 670
LpnPI	CCDG	9 cut(s)	22, 45, 63, 90, 383, 433, 673, 776, 814
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	4 cut(s)	60, 156, 564, 624
MaeI	CTAG	1 cut(s)	521
MaeIII	GTNAC	5 cut(s)	124, 280, 454, 673, 808
MalI	GATC	2 cut(s)	427, 505
MboI	GATC	2 cut(s)	425, 503
MboII	GAAGA	5 cut(s)	128, 335, 340, 386, 631
MflI	RGATCY	1 cut(s)	503
MluCI	AATT	3 cut(s)	259, 429, 854
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	9 cut(s)	59, 248, 323, 326, 347, 371, 497, 592, 874
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	2 cut(s)	252, 563
MslI	CAYNNNNRTG	1 cut(s)	99
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	746
NdeII	GATC	2 cut(s)	425, 503
NlaIII	CATG	3 cut(s)	157, 494, 634
NlaIV	GGNNCC	2 cut(s)	402, 505
NmuCI	GTSAC	2 cut(s)	124, 280
NspI	RCATGY	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	644
PctI	GAATGC	1 cut(s)	846
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	104, 173
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	402, 505
PspPI	GGNCC	1 cut(s)	869
PsuI	RGATCY	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	644
SaqAI	TTAA	2 cut(s)	252, 563
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	2 cut(s)	425, 503
Sau96I	GGNCC	1 cut(s)	869
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	7 cut(s)	79, 211, 437, 621, 714, 746, 891
SfaNI	GCATC	4 cut(s)	60, 156, 564, 624
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	3 cut(s)	259, 429, 854
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	3 cut(s)	520, 744, 872
TaaI	ACNGT	3 cut(s)	460, 683, 814
TaqI	TCGA	1 cut(s)	84
TasI	AATT	3 cut(s)	259, 429, 854
TfiI	GAWTC	2 cut(s)	104, 173
Tru1I	TTAA	2 cut(s)	252, 563
Tru9I	TTAA	2 cut(s)	252, 563
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	2 cut(s)	124, 280
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	2 cut(s)	124, 280
TspDTI	ATGAA	3 cut(s)	117, 270, 467
TspGWI	ACGGA	3 cut(s)	78, 597, 692
TspRI	CASTG	1 cut(s)	103
XapI	RAATTY	2 cut(s)	259, 854
XceI	RCATGY	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	497
XmaJI	CCTAGG	1 cut(s)	520
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.