Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003042

Physical Location & Seq

Genomic Coordinates Reverse (-)

1538260 .. 1540645

Gene Structure 2386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G016600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATACATTCTTGAATGATATCCTATCTCCCACTCGACCCAGATGGAGAAAAGTGGCATATGGAGGGATGCAACCTGGGTTTGATGACAACCATACAGATGACTCTTTTCTTGAAGATATGGTTATGAATGCCAATGTTGTCAAAAGGGACATTCTGAAAGTGATGCTGGATTCTGTTTCCATCTCCCAATATCTGTGTATTGTAGCACTTGTTGGTTTGGTTTGGACCTACACCCTCAGATCAATTCTGAATGAAAATTCACTCTTGCTTCTTGATGTCACTCTTCTTGGATTGGGTTTTCTGGTTCTCCTTTTAACTAAAGAAATGCTTTCCTTCAATCTTTTCTTTCGTTACTTACTCAATATTTCCTTTTTCATCAGTGGCTTGTATGTTTTAGCTCCCATCTATCAAACACTTACAACATCCATTAGCTCGAACTCCATTTGGGCAGTAACTGTGTCACTCCTTGTGCTCCATCTCTTCCTCCATGACTATTATGGATCCACCGTAAGAGCTCCCGGGGCTCTACACAATCCGACCTTGACAAGTTGCATCTCTTTAAATGCTTCTGTTGTGGCCTCAGTTTTCATTGCTTCATGCCTTCGTTCAAGGCTTCTTGTTTTTGCTATCATGCTTTTCTCCTTGCAAGTTTTCCTTTTCGCTCCGTTGGTTACTTACTGTATTAAGAAGTATTCCTTCCGTTTGCACCTTTGGTTTTCTTTTGGTCTCATGATCGCAACCTTGGCTTTTGTTTATACCCTGCATTTGTTACTTTTTGTGATGTTGTTAGGATTGTTGATTTTTGTATCTGTGGTTTGTCCATATTGGCTTATAAGGATGCAAGAATACAAATTCGAAATCAATGGTCCTTGGGATGAGGCTAAACTTTGTTTTGATATAACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

GPI2

Protein Analysis

304

Amino Acids

34.52

Weight (kDa)

6.58

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34980
fragaria_vesca	FvH4_1g22930 FvH4_2g14913
malus_domestica	MD05G1011700.v1.1 MD12G1011000.v1.1
prunus_persica	Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.8G016600_v2.0.a1
pyrus_communis	pycom12g00850
rosa_chinensis	RchiOBHm_Chr3g0496061 RchiOBHm_Chr6g0277521
rosa_laevigata	RLG00000013295 RLG00000022566
rosa_multiflora	Rmu_sc0003910.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389600 Rroxscaffold_7G00191250
rosa_rugosa	Rorug03G0279300 Rorug06G0109400 Rorug06G0109500
rosa_samantha	Rh3AG326300 Rh3BG362600 Rh3CG358700 Rh3DG362000 Rh6AG219700 Rh6BG223600 Rh6CG226100 Rh6DG216500
rosa_wichuraiana	Rw3G028570 Rw6G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	836
AclWI	GGATC	2 cut(s)	498, 511
AcsI	RAATTY	2 cut(s)	259, 854
AgsI	TTSAA	4 cut(s)	16, 116, 340, 612
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	3 cut(s)	401, 435, 518
AluI	AGCT	3 cut(s)	401, 435, 518
Alw21I	GWGCWC	2 cut(s)	477, 520
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	2 cut(s)	498, 511
AlwNI	CAGNNNCTG	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	579
ApoI	RAATTY	2 cut(s)	259, 854
AspS9I	GGNCC	2 cut(s)	228, 869
AsuC2I	CCSGG	2 cut(s)	522, 523
AsuII	TTCGAA	1 cut(s)	858
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	228, 869
BamHI	GGATCC	1 cut(s)	503
BanII	GRGCYC	2 cut(s)	520, 529
Bbv12I	GWGCWC	2 cut(s)	477, 520
BccI	CCATC	4 cut(s)	39, 191, 413, 486
BciT130I	CCWGG	1 cut(s)	78
BcnI	CCSGG	2 cut(s)	522, 523
BcoDI	GTCTC	1 cut(s)	734
Bme1390I	CCNGG	3 cut(s)	78, 522, 523
Bme18I	GGWCC	2 cut(s)	228, 869
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	228, 869
BmiI	GGNNCC	1 cut(s)	505
BmrFI	CCNGG	3 cut(s)	78, 522, 523
BmsI	GCATC	4 cut(s)	60, 156, 564, 831
Bpu14I	TTCGAA	1 cut(s)	858
BpuMI	CCSGG	2 cut(s)	522, 523
BsaI	GGTCTC	1 cut(s)	734
BsaJI	CCNNGG	5 cut(s)	77, 521, 522, 744, 872
Bse3DI	GCAATG	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	5 cut(s)	77, 521, 522, 744, 872
BseGI	GGATG	4 cut(s)	75, 425, 846, 883
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	2 cut(s)	253, 597
BshFI	GGCC	1 cut(s)	581
BsiHKAI	GWGCWC	2 cut(s)	477, 520
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	734
BsmFI	GGGAC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	581
Bso31I	GGTCTC	1 cut(s)	734
BsoBI	CYCGRG	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	858
Bsp1286I	GDGCHC	3 cut(s)	477, 520, 529
Bsp143I	GATC	3 cut(s)	242, 503, 735
BspANI	GGCC	1 cut(s)	581
BspCNI	CTCAG	2 cut(s)	252, 596
BspHI	TCATGA	1 cut(s)	732
BspLI	GGNNCC	1 cut(s)	505
BspPI	GGATC	2 cut(s)	498, 511
BspT104I	TTCGAA	1 cut(s)	858
BspTNI	GGTCTC	1 cut(s)	734
BsrDI	GCAATG	1 cut(s)	591
BssECI	CCNNGG	5 cut(s)	77, 521, 522, 744, 872
BssMI	GATC	3 cut(s)	242, 503, 735
BssT1I	CCWWGG	2 cut(s)	744, 872
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	460, 511, 683
Bst6I	CTCTTC	2 cut(s)	291, 488
BstBI	TTCGAA	1 cut(s)	858
BstDEI	CTNAG	2 cut(s)	239, 583
BstF5I	GGATG	4 cut(s)	75, 425, 846, 883
BstKTI	GATC	3 cut(s)	245, 506, 738
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	3 cut(s)	242, 503, 735
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 746
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	3 cut(s)	76, 520, 521
BstX2I	RGATCY	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	581
BtsCI	GGATG	4 cut(s)	75, 425, 846, 883
BtsIMutI	CAGTG	1 cut(s)	388
CaiI	CAGNNNCTG	1 cut(s)	458
CciI	TCATGA	1 cut(s)	732
Cfr13I	GGNCC	2 cut(s)	228, 869
Cfr9I	CCCGGG	1 cut(s)	521
CviAII	CATG	4 cut(s)	491, 600, 634, 733
DdeI	CTNAG	2 cut(s)	239, 583
DpnI	GATC	3 cut(s)	244, 505, 737
DpnII	GATC	3 cut(s)	242, 503, 735
DraI	TTTAAA	1 cut(s)	564
Eam1104I	CTCTTC	2 cut(s)	291, 488
EarI	CTCTTC	2 cut(s)	291, 488
Ecl136II	GAGCTC	1 cut(s)	518
Eco130I	CCWWGG	2 cut(s)	744, 872
Eco24I	GRGCYC	2 cut(s)	520, 529
Eco31I	GGTCTC	1 cut(s)	734
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	228, 869
Eco53kI	GAGCTC	1 cut(s)	518
Eco88I	CYCGRG	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	744, 872
EcoT38I	GRGCYC	2 cut(s)	520, 529
ErhI	CCWWGG	2 cut(s)	744, 872
FaeI	CATG	4 cut(s)	494, 603, 637, 736
FalI	AAGNNNNNCTT	6 cut(s)	315, 347, 642, 674, 683, 715
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	4 cut(s)	490, 599, 633, 732
FauNDI	CATATG	1 cut(s)	61
FokI	GGATG	4 cut(s)	82, 412, 853, 890
FriOI	GRGCYC	2 cut(s)	520, 529
HaeIII	GGCC	1 cut(s)	581
HapII	CCGG	1 cut(s)	522
Hin1II	CATG	4 cut(s)	494, 603, 637, 736
HinfI	GANTC	2 cut(s)	104, 173
HpaII	CCGG	1 cut(s)	522
Hpy188I	TCNGA	4 cut(s)	159, 242, 252, 540
Hpy188III	TCNNGA	4 cut(s)	13, 113, 275, 733
HpyAV	CCTTC	3 cut(s)	346, 614, 709
HpyCH4III	ACNGT	3 cut(s)	460, 511, 683
HpyCH4V	TGCA	6 cut(s)	73, 555, 649, 709, 766, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 746
HpyF3I	CTNAG	2 cut(s)	239, 583
Hsp92II	CATG	4 cut(s)	494, 603, 637, 736
Kzo9I	GATC	3 cut(s)	242, 503, 735
LmnI	GCTCC	4 cut(s)	406, 480, 523, 670
LpnPI	CCDG	7 cut(s)	55, 63, 90, 155, 290, 535, 776
LweI	GCATC	4 cut(s)	60, 156, 564, 831
MaeIII	GTNAC	6 cut(s)	280, 353, 454, 462, 673, 771
MalI	GATC	3 cut(s)	244, 505, 737
MboI	GATC	3 cut(s)	242, 503, 735
MboII	GAAGA	3 cut(s)	128, 278, 475
MflI	RGATCY	1 cut(s)	503
MhlI	GDGCHC	3 cut(s)	477, 520, 529
MluCI	AATT	3 cut(s)	246, 259, 854
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	5 cut(s)	59, 248, 497, 592, 874
MseI	TTAA	4 cut(s)	317, 563, 687, 910
MslI	CAYNNNNRTG	1 cut(s)	99
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	3 cut(s)	78, 522, 523
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	524, 746
NciI	CCSGG	2 cut(s)	522, 523
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	3 cut(s)	242, 503, 735
NlaIII	CATG	4 cut(s)	494, 603, 637, 736
NlaIV	GGNNCC	1 cut(s)	505
NmuCI	GTSAC	2 cut(s)	280, 462
NspV	TTCGAA	1 cut(s)	858
PagI	TCATGA	1 cut(s)	732
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	173
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PsiI	TTATAA	1 cut(s)	836
Psp124BI	GAGCTC	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	505
PspPI	GGNCC	2 cut(s)	228, 869
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	520
SaqAI	TTAA	4 cut(s)	317, 563, 687, 910
Sau3AI	GATC	3 cut(s)	242, 503, 735
Sau96I	GGNCC	2 cut(s)	228, 869
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	3 cut(s)	78, 522, 523
SduI	GDGCHC	3 cut(s)	477, 520, 529
SetI	ASST	8 cut(s)	79, 233, 403, 437, 520, 545, 714, 746
SfaNI	GCATC	4 cut(s)	60, 156, 564, 831
SfuI	TTCGAA	1 cut(s)	858
SinI	GGWCC	2 cut(s)	228, 869
SmaI	CCCGGG	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	3 cut(s)	246, 259, 854
SspI	AATATT	1 cut(s)	367
SstI	GAGCTC	1 cut(s)	520
StyD4I	CCNGG	3 cut(s)	76, 520, 521
StyI	CCWWGG	2 cut(s)	744, 872
TaaI	ACNGT	3 cut(s)	460, 511, 683
TaqI	TCGA	3 cut(s)	37, 437, 858
TasI	AATT	3 cut(s)	246, 259, 854
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	4 cut(s)	317, 563, 687, 910
Tru9I	TTAA	4 cut(s)	317, 563, 687, 910
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	2 cut(s)	280, 462
Tsp45I	GTSAC	2 cut(s)	280, 462
TspDTI	ATGAA	5 cut(s)	143, 270, 367, 580, 588
TspGWI	ACGGA	2 cut(s)	657, 692
TspMI	CCCGGG	1 cut(s)	521
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	2 cut(s)	228, 869
XapI	RAATTY	2 cut(s)	259, 854
XcmI	CCANNNNNNNNNTGG	1 cut(s)	497
XmaI	CCCGGG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.