Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003042

Physical Location & Seq

Genomic Coordinates Reverse (-)

1139231 .. 1140314

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1011000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATACCAACACGACTGAGAGGACATCTCCGACACAAACCAAATGGAGAAAAGTGGCTTATGGAGGGATGCAACCTGGTTTTGATGACAATTACACTGATGAATCTTTTCTCGAAGAGATGGTCACAAATGCCAACGTGCGAAAAAGGGACATGCTAAAAGTGATGCAGGATTCAGTTTCCATCTCCCAATATCTGTGCATCGTAACTCTCACTGGTTTGGTTTGGATCTACACCCTCAGATCAACTCTGAACGAAAATTCGCTTTTGCTTCTTGATGTCACCCTTCTCGGATTGGGTTTTCTCATACTCCTTTTAACTCAAGAAATGTTTTCCCTCAATCTTCTTTTCCATTACATCCTCAATATTTCTTTTTTTACCACCGGCTTATATCTTCTAGCTCCTATTTATCAAACTCTTACAAGATCCATTAGCTCAGACTCCGTTTGGGCAGTAACCGTCTCACTCCTTGTGCTTCACCTTTTTCTCCATGACTACTTTGGGTCCACCATAAGAACTCTTGGGGCCCCAAACAATCCGACATTGACAAGCTGCATCTCTTTAAATGCTTCTGTTGTGGCCTCGGTTTTCATGGCTTCGCGCCTGCCTTCAAGTCTTCTTGTCTTTGCGAACATGCTTTTCTCCCTGCAAGTTTTCCTTTTCGCTCCGTTGGTAACTTACTGCATCAGGAAGTATTCCTTCCGTCTGCACCTCTGGTTTTCGTTTAGTCTGATGGTTGCAACCTTGGTTTTTGTTTATATGCTACATCTGTTTCTTTTCGTAATGTTGTTAGGGTTGTTGGTTTTTGTAACTTTGGTCTGTCCGTATTGGCTGATACGGATGCAGGAGTACAAATTTGAGATTAACGGTCCGTGGGACGAGGCTAAGCTTTGTTTTGAGATTGTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

GPI2

Protein Analysis

304

Amino Acids

34.73

Weight (kDa)

5.95

Isoelectric Point (pI)

29.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GPI2	PF06432	16 - 293	1.7e-75	Phosphatidylinositol N-acetylglucosaminyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34980
fragaria_vesca	FvH4_1g22930 FvH4_2g14913
malus_domestica	MD05G1011700.v1.1 MD12G1011000.v1.1
prunus_persica	Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.8G016600_v2.0.a1
pyrus_communis	pycom12g00850
rosa_chinensis	RchiOBHm_Chr3g0496061 RchiOBHm_Chr6g0277521
rosa_laevigata	RLG00000013295 RLG00000022566
rosa_multiflora	Rmu_sc0003910.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389600 Rroxscaffold_7G00191250
rosa_rugosa	Rorug03G0279300 Rorug06G0109400 Rorug06G0109500
rosa_samantha	Rh3AG326300 Rh3BG362600 Rh3CG358700 Rh3DG362000 Rh6AG219700 Rh6BG223600 Rh6CG226100 Rh6DG216500
rosa_wichuraiana	Rw3G028570 Rw6G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	601
AclWI	GGATC	2 cut(s)	236, 420
AcsI	RAATTY	2 cut(s)	259, 854
AfaI	GTAC	1 cut(s)	851
AgsI	TTSAA	1 cut(s)	612
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	4 cut(s)	401, 435, 552, 889
AluI	AGCT	4 cut(s)	401, 435, 552, 889
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	2 cut(s)	236, 420
AoxI	GGCC	2 cut(s)	525, 579
ApaI	GGGCCC	1 cut(s)	529
ApeKI	GCWGC	1 cut(s)	552
ApoI	RAATTY	2 cut(s)	259, 854
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	4 cut(s)	504, 525, 526, 869
AsuHPI	GGTGA	2 cut(s)	274, 470
AvaII	GGWCC	2 cut(s)	504, 869
BaeGI	GKGCMC	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	608
BbvI	GCAGC	1 cut(s)	539
BccI	CCATC	3 cut(s)	115, 191, 727
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	1 cut(s)	398
BisI	GCNGC	1 cut(s)	553
BlpI	GCTNAGC	1 cut(s)	885
BlsI	GCNGC	1 cut(s)	554
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	2 cut(s)	504, 869
BmgT120I	GGNCC	4 cut(s)	504, 525, 526, 869
BmiI	GGNNCC	4 cut(s)	505, 526, 527, 528
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	6 cut(s)	60, 156, 210, 564, 693, 831
BpiI	GAAGAC	1 cut(s)	608
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
Bpu1102I	GCTNAGC	1 cut(s)	885
BpuEI	CTTGAG	1 cut(s)	306
BsaJI	CCNNGG	3 cut(s)	582, 744, 872
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	3 cut(s)	582, 744, 872
BseGI	GGATG	3 cut(s)	75, 357, 846
BseMII	CTCAG	3 cut(s)	9, 253, 450
BseNI	ACTGG	1 cut(s)	220
BseSI	GKGCMC	1 cut(s)	529
BseXI	GCAGC	1 cut(s)	539
BsgI	GTGCAG	1 cut(s)	692
Bsh1236I	CGCG	1 cut(s)	601
BshFI	GGCC	2 cut(s)	527, 581
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	2 cut(s)	164, 890
BsmAI	GTCTC	1 cut(s)	466
BsmBI	CGTCTC	1 cut(s)	466
BsmFI	GGGAC	2 cut(s)	164, 890
BsnI	GGCC	2 cut(s)	527, 581
Bsp120I	GGGCCC	1 cut(s)	525
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	3 cut(s)	228, 242, 425
Bsp1720I	GCTNAGC	1 cut(s)	885
BspANI	GGCC	2 cut(s)	527, 581
BspCNI	CTCAG	3 cut(s)	10, 252, 449
BspFNI	CGCG	1 cut(s)	601
BspLI	GGNNCC	4 cut(s)	505, 526, 527, 528
BspPI	GGATC	2 cut(s)	236, 420
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	3 cut(s)	582, 744, 872
BssMI	GATC	3 cut(s)	228, 242, 425
BssT1I	CCWWGG	1 cut(s)	744
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	460, 869
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	605
BstDEI	CTNAG	4 cut(s)	18, 239, 436, 885
BstDSI	CCRYGG	1 cut(s)	872
BstF5I	GGATG	3 cut(s)	75, 357, 846
BstFNI	CGCG	1 cut(s)	601
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	3 cut(s)	231, 245, 428
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	3 cut(s)	228, 242, 425
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	2 cut(s)	157, 637
BstSCI	CCNGG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	529
BstUI	CGCG	1 cut(s)	601
BstV1I	GCAGC	1 cut(s)	539
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	2 cut(s)	228, 425
BstYI	RGATCY	2 cut(s)	228, 425
BsuRI	GGCC	2 cut(s)	527, 581
BtgI	CCRYGG	1 cut(s)	872
BtsCI	GGATG	3 cut(s)	75, 357, 846
BtsIMutI	CAGTG	2 cut(s)	96, 213
Cac8I	GCNNGC	1 cut(s)	605
CfoI	GCGC	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	4 cut(s)	504, 525, 526, 869
CpoI	CGGWCCG	1 cut(s)	869
CsiI	ACCWGGT	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	850
CspI	CGGWCCG	1 cut(s)	869
CviAII	CATG	4 cut(s)	154, 491, 592, 634
CviQI	GTAC	1 cut(s)	850
DdeI	CTNAG	4 cut(s)	18, 239, 436, 885
DpnI	GATC	3 cut(s)	230, 244, 427
DpnII	GATC	3 cut(s)	228, 242, 425
DraI	TTTAAA	1 cut(s)	564
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	744
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	504, 869
EcoO109I	RGGNCCY	2 cut(s)	525, 526
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	744
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	744
Esp3I	CGTCTC	1 cut(s)	466
FaeI	CATG	4 cut(s)	157, 494, 595, 637
FalI	AAGNNNNNCTT	4 cut(s)	642, 674, 683, 715
FaqI	GGGAC	2 cut(s)	164, 890
FatI	CATG	4 cut(s)	153, 490, 591, 633
Fnu4HI	GCNGC	1 cut(s)	553
FokI	GGATG	3 cut(s)	82, 344, 853
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	1 cut(s)	553
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	1 cut(s)	553
HaeIII	GGCC	2 cut(s)	527, 581
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	4 cut(s)	157, 494, 595, 637
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	3 cut(s)	104, 173, 440
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	2 cut(s)	274, 470
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	7 cut(s)	33, 242, 252, 293, 439, 540, 732
Hpy188III	TCNNGA	4 cut(s)	113, 275, 323, 688
Hpy8I	GTNNAC	1 cut(s)	507
HpyAV	CCTTC	3 cut(s)	296, 618, 709
HpyCH4III	ACNGT	2 cut(s)	460, 869
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	9 cut(s)	73, 169, 201, 555, 649, 684, 709, 740, 844
HpyF3I	CTNAG	4 cut(s)	18, 239, 436, 885
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	157, 494, 595, 637
HspAI	GCGC	1 cut(s)	601
Kzo9I	GATC	3 cut(s)	228, 242, 425
LmnI	GCTCC	2 cut(s)	406, 670
Lsp1109I	GCAGC	1 cut(s)	539
LweI	GCATC	6 cut(s)	60, 156, 210, 564, 693, 831
MabI	ACCWGGT	1 cut(s)	76
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	6 cut(s)	124, 205, 280, 454, 673, 808
MalI	GATC	3 cut(s)	230, 244, 427
MboI	GATC	3 cut(s)	228, 242, 425
MboII	GAAGA	4 cut(s)	128, 335, 386, 608
MflI	RGATCY	2 cut(s)	228, 425
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	3 cut(s)	91, 259, 854
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	2 cut(s)	56, 563
MnlI	CCTC	8 cut(s)	15, 59, 248, 347, 371, 592, 722, 874
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	3 cut(s)	317, 563, 864
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	601
NdeII	GATC	3 cut(s)	228, 242, 425
NlaIII	CATG	4 cut(s)	157, 494, 595, 637
NlaIV	GGNNCC	4 cut(s)	505, 526, 527, 528
NmuCI	GTSAC	2 cut(s)	124, 280
NspI	RCATGY	2 cut(s)	157, 637
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	104, 173
PkrI	GCNGC	1 cut(s)	554
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	4 cut(s)	505, 526, 527, 528
PspOMI	GGGCCC	1 cut(s)	525
PspPI	GGNCC	4 cut(s)	504, 525, 526, 869
PsuI	RGATCY	2 cut(s)	228, 425
RsaI	GTAC	1 cut(s)	851
RsaNI	GTAC	1 cut(s)	850
Rsr2I	CGGWCCG	1 cut(s)	869
RsrII	CGGWCCG	1 cut(s)	869
SaqAI	TTAA	3 cut(s)	317, 563, 864
SatI	GCNGC	1 cut(s)	553
Sau3AI	GATC	3 cut(s)	228, 242, 425
Sau96I	GGNCC	4 cut(s)	504, 525, 526, 869
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	529
SetI	ASST	9 cut(s)	79, 141, 403, 437, 483, 554, 714, 746, 891
SexAI	ACCWGGT	1 cut(s)	76
SfaNI	GCATC	6 cut(s)	60, 156, 210, 564, 693, 831
SinI	GGWCC	2 cut(s)	504, 869
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	3 cut(s)	91, 259, 854
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	2 cut(s)	460, 869
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	91, 259, 854
TatI	WGTACW	1 cut(s)	849
TfiI	GAWTC	2 cut(s)	104, 173
Tru1I	TTAA	3 cut(s)	317, 563, 864
Tru9I	TTAA	3 cut(s)	317, 563, 864
TscAI	CASTG	2 cut(s)	103, 220
TseFI	GTSAC	2 cut(s)	124, 280
TseI	GCWGC	1 cut(s)	552
Tsp45I	GTSAC	2 cut(s)	124, 280
TspDTI	ATGAA	2 cut(s)	117, 580
TspGWI	ACGGA	6 cut(s)	433, 657, 692, 813, 853, 861
TspRI	CASTG	2 cut(s)	103, 220
VpaK11BI	GGWCC	2 cut(s)	504, 869
XapI	RAATTY	2 cut(s)	259, 854
XceI	RCATGY	2 cut(s)	157, 637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.