Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003042

Physical Location & Seq

Genomic Coordinates Reverse (-)

2383177 .. 2384088

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1011700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATGCATTCATGAGTGAAATCCTGTCTCCGACGCGACCCAGATGGCGAAAAGTGGCGTATGGAGGGATGCAACCTGGGTTTGATGACAATCACACGGATGACTCTTTTCTTGAAGATATGGTTATGAATGCCAATGTTGTTAAGAGGGACATTCTTAAAGTCATGCTGGATTCCGTTTCGATATCTCAGTACCTCTGCATTGTTGCTCTTGTTGGTTTGGTTTGGACATACACTCTCAGATCGATTCTTAATGAGAATTCGCTCTTGCTTCTCGATGTCACGCTTCTTGGATTGGGGTTTCTTGTTCTCCTTTTAACTAAAGAAATGCTTTCCTTTAGTCTCTTCTTTCGTTACTTGCTCAATATCTCCTTTTTCATCAGTGGCTTATATGTTTTAGCTCCCATCTATCAAACGCTCACCACTTCCATCAGCTCAAACTCCATTTGGGCAGTAACAGTGTCACTCATTGTGCTCCATCTCTTCCTCCATGACTATTCGGGGTCCACCGTAAGAGCTCCCGGGGCTCTACACAATCCAACCTTGACGAGTTGCATCTCTTTGAATGCTTCAGTTGTGGCCTCGGTATTCATTGCTTCGTGCCTTCGGTCAAGGCTGCTTGTTTTCGCTATCATGCTTTTCTCTTTGCAAGTTTTCCTTTTCGCTCCCTTGGTTACTTACTGTATCAAGAAGTATTCCTTCTGTCTGCACCTTTGGTTTTCTTTTGGTCTGATGATTGCGACCTTGACTCTTGTTTATACCTTGCATCTGTTACTTTTTGTGATGTTGTTAGGGTTGTTGATTTTTGTAACTGTGGTTTGTCCGTATTGGCTTATACGGATGCAAGAATACAAGTTTGAGATCAATGGTCCTTGGGATGAGGCTAAACTTTGTTTTGATATAACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

GPI2

Protein Analysis

304

Amino Acids

34.35

Weight (kDa)

6.29

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GPI2	PF06432	16 - 293	1.7e-71	Phosphatidylinositol N-acetylglucosaminyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34980
fragaria_vesca	FvH4_1g22930 FvH4_2g14913
malus_domestica	MD05G1011700.v1.1 MD12G1011000.v1.1
prunus_persica	Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.8G016600_v2.0.a1
pyrus_communis	pycom12g00850
rosa_chinensis	RchiOBHm_Chr3g0496061 RchiOBHm_Chr6g0277521
rosa_laevigata	RLG00000013295 RLG00000022566
rosa_multiflora	Rmu_sc0003910.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389600 Rroxscaffold_7G00191250
rosa_rugosa	Rorug03G0279300 Rorug06G0109400 Rorug06G0109500
rosa_samantha	Rh3AG326300 Rh3BG362600 Rh3CG358700 Rh3DG362000 Rh6AG219700 Rh6BG223600 Rh6CG226100 Rh6DG216500
rosa_wichuraiana	Rw3G028570 Rw6G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	2 cut(s)	116, 565
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	3 cut(s)	401, 435, 518
AluI	AGCT	3 cut(s)	401, 435, 518
Alw21I	GWGCWC	2 cut(s)	477, 520
Alw26I	GTCTC	2 cut(s)	33, 347
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	579
ApeKI	GCWGC	1 cut(s)	616
ApoI	RAATTY	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	504, 869
AsuC2I	CCSGG	2 cut(s)	522, 523
AsuHPI	GGTGA	1 cut(s)	412
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	504, 869
BanII	GRGCYC	2 cut(s)	520, 529
Bbv12I	GWGCWC	2 cut(s)	477, 520
BbvI	GCAGC	1 cut(s)	603
BccI	CCATC	4 cut(s)	39, 413, 437, 486
BciT130I	CCWGG	1 cut(s)	78
BcnI	CCSGG	2 cut(s)	522, 523
BcoDI	GTCTC	2 cut(s)	33, 347
BisI	GCNGC	1 cut(s)	617
BlsI	GCNGC	1 cut(s)	618
Bme1390I	CCNGG	3 cut(s)	78, 522, 523
Bme18I	GGWCC	2 cut(s)	504, 869
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	504, 869
BmiI	GGNNCC	1 cut(s)	505
BmrFI	CCNGG	3 cut(s)	78, 522, 523
BmsI	GCATC	4 cut(s)	60, 564, 775, 831
BpuMI	CCSGG	2 cut(s)	522, 523
Bsa29I	ATCGAT	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	90
BsaJI	CCNNGG	6 cut(s)	77, 521, 522, 582, 669, 872
Bse3DI	GCAATG	1 cut(s)	591
Bse8I	GATNNNNATC	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	245
BseDI	CCNNGG	6 cut(s)	77, 521, 522, 582, 669, 872
BseGI	GGATG	5 cut(s)	10, 75, 106, 846, 883
BseJI	GATNNNNATC	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	2 cut(s)	203, 253
BseXI	GCAGC	1 cut(s)	603
BsgI	GTGCAG	1 cut(s)	692
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	581
BshVI	ATCGAT	1 cut(s)	245
BsiHKAI	GWGCWC	2 cut(s)	477, 520
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	33, 347
BsmFI	GGGAC	1 cut(s)	164
BsmI	GAATGC	3 cut(s)	8, 136, 571
BsnI	GGCC	1 cut(s)	581
BsoBI	CYCGRG	1 cut(s)	521
Bsp1286I	GDGCHC	3 cut(s)	477, 520, 529
Bsp143I	GATC	2 cut(s)	242, 861
BspANI	GGCC	1 cut(s)	581
BspCNI	CTCAG	2 cut(s)	202, 252
BspDI	ATCGAT	1 cut(s)	245
BspFNI	CGCG	1 cut(s)	37
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	591
BssECI	CCNNGG	6 cut(s)	77, 521, 522, 582, 669, 872
BssMI	GATC	2 cut(s)	242, 861
BssT1I	CCWWGG	2 cut(s)	669, 872
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	4 cut(s)	460, 511, 683, 814
Bst6I	CTCTTC	2 cut(s)	350, 488
BstDEI	CTNAG	2 cut(s)	189, 239
BstF5I	GGATG	5 cut(s)	10, 75, 106, 846, 883
BstFNI	CGCG	1 cut(s)	37
BstKTI	GATC	2 cut(s)	245, 864
BstMAI	GTCTC	2 cut(s)	33, 347
BstMBI	GATC	2 cut(s)	242, 861
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	3 cut(s)	76, 520, 521
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	603
Bsu15I	ATCGAT	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	581
BsuTUI	ATCGAT	1 cut(s)	245
BtsCI	GGATG	5 cut(s)	10, 75, 106, 846, 883
BtsIMutI	CAGTG	2 cut(s)	388, 465
CciI	TCATGA	1 cut(s)	12
Cfr13I	GGNCC	2 cut(s)	504, 869
Cfr9I	CCCGGG	1 cut(s)	521
ClaI	ATCGAT	1 cut(s)	245
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	4 cut(s)	13, 166, 491, 634
CviJI	RGCY	9 cut(s)	387, 401, 435, 518, 527, 581, 616, 832, 884
CviKI_1	RGCY	9 cut(s)	387, 401, 435, 518, 527, 581, 616, 832, 884
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	189, 239
DpnI	GATC	2 cut(s)	244, 863
DpnII	GATC	2 cut(s)	242, 861
Eam1104I	CTCTTC	2 cut(s)	350, 488
EarI	CTCTTC	2 cut(s)	350, 488
Ecl136II	GAGCTC	1 cut(s)	518
Eco130I	CCWWGG	2 cut(s)	669, 872
Eco24I	GRGCYC	2 cut(s)	520, 529
Eco32I	GATATC	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	504, 869
Eco53kI	GAGCTC	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	555
Eco88I	CYCGRG	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	518
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	186
EcoT14I	CCWWGG	2 cut(s)	669, 872
EcoT22I	ATGCAT	1 cut(s)	10
EcoT38I	GRGCYC	2 cut(s)	520, 529
ErhI	CCWWGG	2 cut(s)	669, 872
FaeI	CATG	4 cut(s)	16, 169, 494, 637
FalI	AAGNNNNNCTT	6 cut(s)	315, 347, 642, 674, 683, 715
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	4 cut(s)	12, 165, 490, 633
Fnu4HI	GCNGC	1 cut(s)	617
FokI	GGATG	5 cut(s)	17, 82, 113, 853, 890
FriOI	GRGCYC	2 cut(s)	520, 529
Fsp4HI	GCNGC	1 cut(s)	617
GluI	GCNGC	1 cut(s)	617
HaeIII	GGCC	1 cut(s)	581
HapII	CCGG	1 cut(s)	522
HgaI	GACGC	1 cut(s)	43
Hin1II	CATG	4 cut(s)	16, 169, 494, 637
HinfI	GANTC	4 cut(s)	104, 173, 247, 748
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	3 cut(s)	33, 242, 732
Hpy188III	TCNNGA	4 cut(s)	13, 113, 275, 688
Hpy8I	GTNNAC	1 cut(s)	507
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	2 cut(s)	614, 709
HpyCH4III	ACNGT	4 cut(s)	460, 511, 683, 814
HpyCH4V	TGCA	8 cut(s)	8, 73, 201, 555, 649, 709, 766, 844
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
HpyF3I	CTNAG	2 cut(s)	189, 239
Hsp92II	CATG	4 cut(s)	16, 169, 494, 637
Kzo9I	GATC	2 cut(s)	242, 861
LmnI	GCTCC	4 cut(s)	406, 480, 523, 670
LpnPI	CCDG	6 cut(s)	38, 55, 63, 90, 155, 535
Lsp1109I	GCAGC	1 cut(s)	603
LweI	GCATC	4 cut(s)	60, 564, 775, 831
MaeIII	GTNAC	7 cut(s)	280, 353, 454, 462, 673, 771, 808
MalI	GATC	2 cut(s)	244, 863
MboI	GATC	2 cut(s)	242, 861
MboII	GAAGA	3 cut(s)	128, 337, 475
MhlI	GDGCHC	3 cut(s)	477, 520, 529
MluCI	AATT	1 cut(s)	259
MlyI	GAGTC	2 cut(s)	98, 742
MmeI	TCCRAC	2 cut(s)	56, 563
MnlI	CCTC	6 cut(s)	59, 141, 206, 497, 592, 874
Mph1103I	ATGCAT	1 cut(s)	10
MseI	TTAA	4 cut(s)	144, 159, 252, 317
MslI	CAYNNNNRTG	1 cut(s)	99
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	3 cut(s)	78, 522, 523
Mva1269I	GAATGC	3 cut(s)	8, 136, 571
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	524
NciI	CCSGG	2 cut(s)	522, 523
NdeII	GATC	2 cut(s)	242, 861
NlaIII	CATG	4 cut(s)	16, 169, 494, 637
NlaIV	GGNNCC	1 cut(s)	505
NmuCI	GTSAC	2 cut(s)	280, 462
NsiI	ATGCAT	1 cut(s)	10
PagI	TCATGA	1 cut(s)	12
PctI	GAATGC	3 cut(s)	8, 136, 571
PfeI	GAWTC	2 cut(s)	173, 247
PkrI	GCNGC	1 cut(s)	618
PleI	GAGTC	2 cut(s)	98, 742
PpsI	GAGTC	2 cut(s)	98, 742
Psp124BI	GAGCTC	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	505
PspPI	GGNCC	2 cut(s)	504, 869
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	520
SaqAI	TTAA	4 cut(s)	144, 159, 252, 317
SatI	GCNGC	1 cut(s)	617
Sau3AI	GATC	2 cut(s)	242, 861
Sau96I	GGNCC	2 cut(s)	504, 869
SchI	GAGTC	2 cut(s)	98, 742
ScrFI	CCNGG	3 cut(s)	78, 522, 523
SduI	GDGCHC	3 cut(s)	477, 520, 529
SetI	ASST	9 cut(s)	79, 198, 403, 437, 520, 545, 714, 746, 764
SfaNI	GCATC	4 cut(s)	60, 564, 775, 831
SinI	GGWCC	2 cut(s)	504, 869
SmaI	CCCGGG	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	1 cut(s)	259
SstI	GAGCTC	1 cut(s)	520
StyD4I	CCNGG	3 cut(s)	76, 520, 521
StyI	CCWWGG	2 cut(s)	669, 872
TaaI	ACNGT	4 cut(s)	460, 511, 683, 814
TaqI	TCGA	3 cut(s)	182, 245, 276
TaqII	GACCGA	1 cut(s)	597
TasI	AATT	1 cut(s)	259
TfiI	GAWTC	2 cut(s)	173, 247
Tru1I	TTAA	4 cut(s)	144, 159, 252, 317
Tru9I	TTAA	4 cut(s)	144, 159, 252, 317
TscAI	CASTG	2 cut(s)	388, 465
TseFI	GTSAC	2 cut(s)	280, 462
TseI	GCWGC	1 cut(s)	616
Tsp45I	GTSAC	2 cut(s)	280, 462
TspDTI	ATGAA	3 cut(s)	143, 367, 580
TspGWI	ACGGA	4 cut(s)	113, 166, 813, 853
TspMI	CCCGGG	1 cut(s)	521
TspRI	CASTG	2 cut(s)	388, 465
VpaK11BI	GGWCC	2 cut(s)	504, 869
XapI	RAATTY	1 cut(s)	259
XmaI	CCCGGG	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.