Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003042

Physical Location & Seq

Genomic Coordinates Forward (+)

14865777 .. 14865953

Gene Structure 177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0109500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGTGCGTGTTTGTGTTTCCCTCGATGTTTGTGAGTTTGATTGCTGCTGAGATCCTTGTGGTAATTGAGGCCGTTGAGCTTGCTTGGGTCCAGAAATGGCATCATCTTTGGCTAGAGACGGATTCCATATATGTTGTTCATCTTCTCTCTTTATCATCTAGTGGTGTTCATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

GPI2

Protein Analysis

58

Amino Acids

6.67

Weight (kDa)

5.24

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34980
fragaria_vesca	FvH4_1g22930 FvH4_2g14913
malus_domestica	MD05G1011700.v1.1 MD12G1011000.v1.1
prunus_persica	Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.8G016600_v2.0.a1
pyrus_communis	pycom12g00850
rosa_chinensis	RchiOBHm_Chr3g0496061 RchiOBHm_Chr6g0277521
rosa_laevigata	RLG00000013295 RLG00000022566
rosa_multiflora	Rmu_sc0003910.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389600 Rroxscaffold_7G00191250
rosa_rugosa	Rorug03G0279300 Rorug06G0109400 Rorug06G0109500
rosa_samantha	Rh3AG326300 Rh3BG362600 Rh3CG358700 Rh3DG362000 Rh6AG219700 Rh6BG223600 Rh6CG226100 Rh6DG216500
rosa_wichuraiana	Rw3G028570 Rw6G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	46
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	2 cut(s)	113, 159
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	89
BmsI	GCATC	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	110
BsmBI	CGTCTC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	51
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	46
BssMI	GATC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	48
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	88
CviJI	RGCY	3 cut(s)	71, 79, 112
CviKI_1	RGCY	3 cut(s)	71, 79, 112
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	110
FaiI	YATR	3 cut(s)	128, 130, 132
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	2 cut(s)	113, 159
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	71
HinfI	GANTC	1 cut(s)	122
Hpy188III	TCNNGA	1 cut(s)	91
HpyF3I	CTNAG	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	51
LpnPI	CCDG	1 cut(s)	104
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	113, 159
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	1 cut(s)	134
MflI	RGATCY	1 cut(s)	51
MluCI	AATT	1 cut(s)	63
MnlI	CCTC	2 cut(s)	31, 61
NdeII	GATC	1 cut(s)	51
NlaIV	GGNNCC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	51
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	88
SetI	ASST	1 cut(s)	81
SfaNI	GCATC	1 cut(s)	109
SgeI	CNNG	8 cut(s)	19, 34, 68, 92, 96, 103, 125, 171
SinI	GGWCC	1 cut(s)	88
Sse9I	AATT	1 cut(s)	63
SspMI	CTAG	2 cut(s)	113, 159
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	128, 158
TspGWI	ACGGA	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	88
XspI	CTAG	2 cut(s)	113, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.