Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003042

Physical Location & Seq

Genomic Coordinates Forward (+)

44894687 .. 44895598

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG362000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGTTAGCAGCATGACTGAAAGCACATCTCCTGCAAAACCCAAATGGAAAAAAGTGGTTTATGGGGGGATGCAACCTGGTTTTGATGACAATCACACAGATGAATCTTTTCTTGAAGATATGGTCACTAATGCCAATGTTGTTAAAAGGGACTTGCTAAAAGTGATGCAGGATTCAGTGTCCATCTCCCAATATTTGTGCATTGTAGCTCTAATCGGGTTGGTTTGGATCTACACCCTCAGATCAACTCTTAATGAAAATTCACTTTTACTTCTTGATGTCACCCTTCTTGGGTTGGGTTTTCTTATTCTCCTTTTAACTCAAGAAATGTTATCCCTCAATCTGTTCTTGCATTACCTCCTCAATGTTTCCTTTTTCACTTCTGGCCTGTATCTTTTGGCTCCTATCTATCAAACTCTTACAAGATCCATTAGCTCAGACTCCATTTTGGCAGTAACATTTTCACTACTTTTGCTCCATCTTTTCTTCCATGACTACTTTGGATCCACTGTAAGAACACTTGGTGCTCTAAACAGTCCGACATTGACAAGTTGCATTTCTTTAAATGCTTCTATTGTGGCCTCAGTTTTTATTGCATCCCGCCTTCCATCAACTCTACTTGTTTTTGCAATCATGCACTTCTCTTTGCAAGTTTTCCTTTTCGCTCCATTGGTTACTTACTGTATTAAGAAATATTCCTTCCGTTTGCACATGTGGTTTTCTTTTGGTCTGATGATTGCCACCTTGGCCCTTGTTTATACCTTGCACCTATTTCTTTTTGTGATGTTCTTAGGGTTGTTGATTATTGTATCAGTTGTCTGTCCATACTGGCTCATACAGATGCAGGAATACAAATTTGAGATCCATGGTCCCTGGGATGAGGCTAAGCTCTGTTTTGATATAATAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

GPI2

Protein Analysis

303

Amino Acids

34.31

Weight (kDa)

6.03

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GPI2	PF06432	16 - 293	9.1e-75	Phosphatidylinositol N-acetylglucosaminyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34980
fragaria_vesca	FvH4_1g22930 FvH4_2g14913
malus_domestica	MD05G1011700.v1.1 MD12G1011000.v1.1
prunus_persica	Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.8G016600_v2.0.a1
pyrus_communis	pycom12g00850
rosa_chinensis	RchiOBHm_Chr3g0496061 RchiOBHm_Chr6g0277521
rosa_laevigata	RLG00000013295 RLG00000022566
rosa_multiflora	Rmu_sc0003910.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389600 Rroxscaffold_7G00191250
rosa_rugosa	Rorug03G0279300 Rorug06G0109400 Rorug06G0109500
rosa_samantha	Rh3AG326300 Rh3BG362600 Rh3CG358700 Rh3DG362000 Rh6AG219700 Rh6BG223600 Rh6CG226100 Rh6DG216500
rosa_wichuraiana	Rw3G028570 Rw6G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	601
AclWI	GGATC	5 cut(s)	236, 420, 498, 511, 856
AcsI	RAATTY	2 cut(s)	259, 854
AdeI	CACNNNGTG	1 cut(s)	524
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflIII	ACRYGT	1 cut(s)	711
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	2 cut(s)	76, 872
AluBI	AGCT	3 cut(s)	209, 435, 889
AluI	AGCT	3 cut(s)	209, 435, 889
Alw21I	GWGCWC	1 cut(s)	529
AlwI	GGATC	5 cut(s)	236, 420, 498, 511, 856
AoxI	GGCC	3 cut(s)	385, 579, 747
ApeKI	GCWGC	1 cut(s)	9
ApoI	RAATTY	2 cut(s)	259, 854
Asp700I	GAANNNNTTC	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	748, 869
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	869
BamHI	GGATCC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	3 cut(s)	191, 486, 616
BciT130I	CCWGG	2 cut(s)	78, 874
BglI	GCCNNNNNGGC	1 cut(s)	746
BisI	GCNGC	1 cut(s)	10
BlpI	GCTNAGC	1 cut(s)	885
BlsI	GCNGC	1 cut(s)	11
Bme1390I	CCNGG	2 cut(s)	78, 874
Bme18I	GGWCC	1 cut(s)	869
BmgT120I	GGNCC	2 cut(s)	748, 869
BmiI	GGNNCC	3 cut(s)	402, 505, 871
BmrFI	CCNGG	2 cut(s)	78, 874
BmsI	GCATC	4 cut(s)	60, 156, 605, 831
Bpu1102I	GCTNAGC	1 cut(s)	885
BpuEI	CTTGAG	1 cut(s)	306
BsaBI	GATNNNNATC	1 cut(s)	90
BsaJI	CCNNGG	4 cut(s)	744, 865, 872, 873
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	833
Bse8I	GATNNNNATC	1 cut(s)	90
BseBI	CCWGG	2 cut(s)	78, 874
BseDI	CCNNGG	4 cut(s)	744, 865, 872, 873
BseGI	GGATG	3 cut(s)	75, 596, 883
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMII	CTCAG	3 cut(s)	253, 450, 597
BseNI	ACTGG	1 cut(s)	833
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	21
BshFI	GGCC	3 cut(s)	387, 581, 749
BsiHKAI	GWGCWC	1 cut(s)	529
BslFI	GGGAC	2 cut(s)	164, 855
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmFI	GGGAC	2 cut(s)	164, 855
BsnI	GGCC	3 cut(s)	387, 581, 749
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	5 cut(s)	228, 242, 425, 503, 861
Bsp1720I	GCTNAGC	1 cut(s)	885
Bsp19I	CCATGG	1 cut(s)	865
BspACI	CCGC	1 cut(s)	601
BspANI	GGCC	3 cut(s)	387, 581, 749
BspCNI	CTCAG	3 cut(s)	252, 449, 596
BspLI	GGNNCC	3 cut(s)	402, 505, 871
BspPI	GGATC	5 cut(s)	236, 420, 498, 511, 856
BsrI	ACTGG	1 cut(s)	833
BssECI	CCNNGG	4 cut(s)	744, 865, 872, 873
BssMI	GATC	5 cut(s)	228, 242, 425, 503, 861
BssT1I	CCWWGG	2 cut(s)	744, 865
Bst2UI	CCWGG	2 cut(s)	78, 874
Bst4CI	ACNGT	3 cut(s)	511, 536, 683
BstDEI	CTNAG	5 cut(s)	239, 436, 583, 790, 885
BstDSI	CCRYGG	1 cut(s)	865
BstF5I	GGATG	3 cut(s)	75, 596, 883
BstKTI	GATC	5 cut(s)	231, 245, 428, 506, 864
BstMBI	GATC	5 cut(s)	228, 242, 425, 503, 861
BstMWI	GCNNNNNNNGC	1 cut(s)	746
BstNI	CCWGG	2 cut(s)	78, 874
BstNSI	RCATGY	1 cut(s)	715
BstSCI	CCNGG	2 cut(s)	76, 872
BstV1I	GCAGC	1 cut(s)	21
BstX2I	RGATCY	4 cut(s)	228, 425, 503, 861
BstYI	RGATCY	4 cut(s)	228, 425, 503, 861
BsuRI	GGCC	3 cut(s)	387, 581, 749
BtgI	CCRYGG	1 cut(s)	865
BtsCI	GGATG	3 cut(s)	75, 596, 883
BtsIMutI	CAGTG	2 cut(s)	183, 507
Cfr13I	GGNCC	2 cut(s)	748, 869
CsiI	ACCWGGT	1 cut(s)	76
CviAII	CATG	5 cut(s)	13, 491, 634, 712, 866
CviJI	RGCY	9 cut(s)	209, 387, 401, 435, 581, 749, 832, 884, 889
CviKI_1	RGCY	9 cut(s)	209, 387, 401, 435, 581, 749, 832, 884, 889
DdeI	CTNAG	5 cut(s)	239, 436, 583, 790, 885
DpnI	GATC	5 cut(s)	230, 244, 427, 505, 863
DpnII	GATC	5 cut(s)	228, 242, 425, 503, 861
DraI	TTTAAA	1 cut(s)	564
DraIII	CACNNNGTG	1 cut(s)	524
Eco130I	CCWWGG	2 cut(s)	744, 865
Eco47I	GGWCC	1 cut(s)	869
EcoRII	CCWGG	2 cut(s)	76, 872
EcoT14I	CCWWGG	2 cut(s)	744, 865
ErhI	CCWWGG	2 cut(s)	744, 865
FaeI	CATG	5 cut(s)	16, 494, 637, 715, 869
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FaqI	GGGAC	2 cut(s)	164, 855
FatI	CATG	5 cut(s)	12, 490, 633, 711, 865
FauI	CCCGC	1 cut(s)	608
Fnu4HI	GCNGC	1 cut(s)	10
FokI	GGATG	3 cut(s)	82, 583, 890
Fsp4HI	GCNGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	10
HaeIII	GGCC	3 cut(s)	387, 581, 749
Hin1II	CATG	5 cut(s)	16, 494, 637, 715, 869
HinfI	GANTC	3 cut(s)	104, 173, 440
HphI	GGTGA	1 cut(s)	274
Hpy188I	TCNGA	4 cut(s)	242, 439, 540, 732
Hpy188III	TCNNGA	3 cut(s)	113, 275, 323
HpyAV	CCTTC	3 cut(s)	296, 614, 709
HpyCH4III	ACNGT	3 cut(s)	511, 536, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	746
HpyF3I	CTNAG	5 cut(s)	239, 436, 583, 790, 885
Hsp92II	CATG	5 cut(s)	16, 494, 637, 715, 869
Kzo9I	GATC	5 cut(s)	228, 242, 425, 503, 861
LmnI	GCTCC	3 cut(s)	406, 480, 670
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	4 cut(s)	60, 156, 605, 831
MabI	ACCWGGT	1 cut(s)	76
MaeIII	GTNAC	4 cut(s)	124, 280, 454, 673
MalI	GATC	5 cut(s)	230, 244, 427, 505, 863
MboI	GATC	5 cut(s)	228, 242, 425, 503, 861
MboII	GAAGA	2 cut(s)	128, 478
MflI	RGATCY	4 cut(s)	228, 425, 503, 861
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	2 cut(s)	259, 854
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	6 cut(s)	248, 347, 368, 371, 592, 874
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	5 cut(s)	144, 252, 317, 563, 687
MslI	CAYNNNNRTG	2 cut(s)	99, 839
MspR9I	CCNGG	2 cut(s)	78, 874
MvaI	CCWGG	2 cut(s)	78, 874
MwoI	GCNNNNNNNGC	1 cut(s)	746
NcoI	CCATGG	1 cut(s)	865
NdeII	GATC	5 cut(s)	228, 242, 425, 503, 861
NlaIII	CATG	5 cut(s)	16, 494, 637, 715, 869
NlaIV	GGNNCC	3 cut(s)	402, 505, 871
NmuCI	GTSAC	2 cut(s)	124, 280
NspI	RCATGY	1 cut(s)	715
PasI	CCCWGGG	1 cut(s)	873
PciI	ACATGT	1 cut(s)	711
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	104, 173
PkrI	GCNGC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
PscI	ACATGT	1 cut(s)	711
Psp6I	CCWGG	2 cut(s)	76, 872
PspGI	CCWGG	2 cut(s)	76, 872
PspN4I	GGNNCC	3 cut(s)	402, 505, 871
PspPI	GGNCC	2 cut(s)	748, 869
PsuI	RGATCY	4 cut(s)	228, 425, 503, 861
RseI	CAYNNNNRTG	2 cut(s)	99, 839
SaqAI	TTAA	5 cut(s)	144, 252, 317, 563, 687
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	5 cut(s)	228, 242, 425, 503, 861
Sau96I	GGNCC	2 cut(s)	748, 869
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	2 cut(s)	78, 874
SduI	GDGCHC	1 cut(s)	529
SetI	ASST	8 cut(s)	79, 211, 360, 437, 746, 764, 771, 891
SexAI	ACCWGGT	1 cut(s)	76
SfaNI	GCATC	4 cut(s)	60, 156, 605, 831
SinI	GGWCC	1 cut(s)	869
SmiMI	CAYNNNNRTG	2 cut(s)	99, 839
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	2 cut(s)	259, 854
SsiI	CCGC	1 cut(s)	601
SspI	AATATT	2 cut(s)	194, 695
StyD4I	CCNGG	2 cut(s)	76, 872
StyI	CCWWGG	2 cut(s)	744, 865
TaaI	ACNGT	3 cut(s)	511, 536, 683
TasI	AATT	2 cut(s)	259, 854
TfiI	GAWTC	2 cut(s)	104, 173
Tru1I	TTAA	5 cut(s)	144, 252, 317, 563, 687
Tru9I	TTAA	5 cut(s)	144, 252, 317, 563, 687
TscAI	CASTG	2 cut(s)	183, 514
TseFI	GTSAC	2 cut(s)	124, 280
TseI	GCWGC	1 cut(s)	9
Tsp45I	GTSAC	2 cut(s)	124, 280
TspDTI	ATGAA	2 cut(s)	117, 270
TspGWI	ACGGA	1 cut(s)	692
TspRI	CASTG	2 cut(s)	183, 514
VpaK11BI	GGWCC	1 cut(s)	869
XapI	RAATTY	2 cut(s)	259, 854
XceI	RCATGY	1 cut(s)	715
XcmI	CCANNNNNNNNNTGG	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.