Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003042

Physical Location & Seq

Genomic Coordinates Forward (+)

14844938 .. 14846239

Gene Structure 1302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGACCGTTGTTCACTCTGCATATTGTGCTTCGAAATTTTCATCCTTGGTCATCTTCGATTTGATTTGGGTCGTGATGGAGAGCGAAATGATGACCTCTTCTACATGGAGAAAAGTTGCATACGGAGGCATGCAACCCGGGTTTGACGACAACCACACAGACGACTCATTCCTGGAAGAAATGGTGATGAATGCCAACGTTGTCAAACGTGACATTCTCAAAGTCATGCTCGACTCTGTCTCCATATCTCAGTACCTCTGCATTGTCGCTCTCGTAGGTTTGGTTTGGACCTACACCCTCAGATCAATCCTCAACGAAAACTCACTCTTGCTTCTTGACGTCACACTTCTCGGTTTAGGGTTCCTCGTTCTGCTTCTAACAAAAGAAATGCTCTCCTTCAATCTTTTCATGCGTTACTTGCTCAACATTTCGTTTTTCATTAGTGGTTTGTATGTTTTGGCTCCAATATACCAAACACTCACCACTTCCATTAGCTCCAATTCGATTTGGGCCGTCACGGTTGCGTTGCTTGTCCTGCATTTGTTCCTGCATGATTACTTTGGCTCCACTGTTAGGGCTCCTGGGGCTCTGCACAATCCCACACTGACAAGTTGTATTTCTTTGAATGCTTCTGTTGTGGCCTCAGTGTTCATTGCTTCTTGCCTCCGGTCTAGGTTGCAGGTTTTCGCAATCATGTTGTTCTCTCTGCAAGTGTTCCTTTTCGCTCCATTGGTTACATACTGTATTAAGAAGTATTCGTTCCGTTTACATCTTTGGTTTTCTTTTGGGCTGATGATTGCTACATTAGTGTTTGTTTATACCCTACATTTGTTGCTTTTTGTGATGTTGTTAGGATTGTTGGTTTTTGTCACTGTGGTTTGTCCGTATTGGCTGATCCGGATGCAAGAATATAAGTTTGAGATAAAGGGTCCTTGGGATGAGGCTAAGCTTTGCTTTGATATCACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

GPI2

Protein Analysis

324

Amino Acids

36.7

Weight (kDa)

6.37

Isoelectric Point (pI)

26.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GPI2	PF06432	36 - 313	1.4e-72	Phosphatidylinositol N-acetylglucosaminyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34980
fragaria_vesca	FvH4_1g22930 FvH4_2g14913
malus_domestica	MD05G1011700.v1.1 MD12G1011000.v1.1
prunus_persica	Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.8G016600_v2.0.a1
pyrus_communis	pycom12g00850
rosa_chinensis	RchiOBHm_Chr3g0496061 RchiOBHm_Chr6g0277521
rosa_laevigata	RLG00000013295 RLG00000022566
rosa_multiflora	Rmu_sc0003910.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389600 Rroxscaffold_7G00191250
rosa_rugosa	Rorug03G0279300 Rorug06G0109400 Rorug06G0109500
rosa_samantha	Rh3AG326300 Rh3BG362600 Rh3CG358700 Rh3DG362000 Rh6AG219700 Rh6BG223600 Rh6CG226100 Rh6DG216500
rosa_wichuraiana	Rw3G028570 Rw6G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
Acc36I	ACCTGC	1 cut(s)	670
AccIII	TCCGGA	1 cut(s)	897
AclI	AACGTT	1 cut(s)	198
AclWI	GGATC	1 cut(s)	889
AcsI	RAATTY	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	573
AgsI	TTSAA	2 cut(s)	400, 625
AjnI	CCWGG	2 cut(s)	171, 580
AluBI	AGCT	2 cut(s)	495, 949
AluI	AGCT	2 cut(s)	495, 949
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	889
Ama87I	CYCGRG	1 cut(s)	137
Aor13HI	TCCGGA	1 cut(s)	897
AoxI	GGCC	2 cut(s)	510, 639
ApoI	RAATTY	1 cut(s)	35
AspS9I	GGNCC	3 cut(s)	288, 510, 929
AsuC2I	CCSGG	2 cut(s)	138, 139
AsuHPI	GGTGA	2 cut(s)	196, 472
AsuII	TTCGAA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	288, 929
BanII	GRGCYC	2 cut(s)	580, 589
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	2 cut(s)	173, 582
BcnI	CCSGG	2 cut(s)	138, 139
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	1 cut(s)	672
BfuAI	ACCTGC	1 cut(s)	670
BlpI	GCTNAGC	1 cut(s)	945
Bme1390I	CCNGG	4 cut(s)	138, 139, 173, 582
Bme18I	GGWCC	2 cut(s)	288, 929
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	3 cut(s)	288, 510, 929
BmiI	GGNNCC	5 cut(s)	362, 462, 565, 579, 930
BmrFI	CCNGG	4 cut(s)	138, 139, 173, 582
BmsI	GCATC	1 cut(s)	891
Bpu1102I	GCTNAGC	1 cut(s)	945
Bpu14I	TTCGAA	1 cut(s)	32
BpuMI	CCSGG	2 cut(s)	138, 139
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	4 cut(s)	45, 137, 581, 932
BsaWI	WCCGGW	2 cut(s)	666, 897
BsaXI	ACNNNNNCTCC	4 cut(s)	224, 254, 548, 578
Bsc4I	CCNNNNNNNGG	1 cut(s)	573
Bse3DI	GCAATG	1 cut(s)	651
BseAI	TCCGGA	1 cut(s)	897
BseBI	CCWGG	2 cut(s)	173, 582
BseDI	CCNNGG	4 cut(s)	45, 137, 581, 932
BseGI	GGATG	3 cut(s)	41, 906, 943
BseLI	CCNNNNNNNGG	1 cut(s)	573
BseMI	GCAATG	1 cut(s)	651
BseMII	CTCAG	3 cut(s)	263, 313, 657
BsgI	GTGCAG	1 cut(s)	575
BshFI	GGCC	2 cut(s)	512, 641
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	138, 667, 898
BslI	CCNNNNNNNGG	1 cut(s)	573
BsmAI	GTCTC	1 cut(s)	244
BsmI	GAATGC	2 cut(s)	196, 631
BsnI	GGCC	2 cut(s)	512, 641
BsoBI	CYCGRG	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	580, 589
Bsp13I	TCCGGA	1 cut(s)	897
Bsp143I	GATC	2 cut(s)	302, 894
Bsp1720I	GCTNAGC	1 cut(s)	945
BspANI	GGCC	2 cut(s)	512, 641
BspCNI	CTCAG	3 cut(s)	262, 312, 656
BspEI	TCCGGA	1 cut(s)	897
BspLI	GGNNCC	5 cut(s)	362, 462, 565, 579, 930
BspMI	ACCTGC	1 cut(s)	670
BspPI	GGATC	1 cut(s)	889
BspT104I	TTCGAA	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	651
BssECI	CCNNGG	4 cut(s)	45, 137, 581, 932
BssMI	GATC	2 cut(s)	302, 894
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	2 cut(s)	45, 932
Bst2UI	CCWGG	2 cut(s)	173, 582
Bst4CI	ACNGT	5 cut(s)	7, 520, 571, 743, 874
Bst6I	CTCTTC	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	4 cut(s)	249, 299, 643, 945
BstF5I	GGATG	3 cut(s)	41, 906, 943
BstKTI	GATC	2 cut(s)	305, 897
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	2 cut(s)	302, 894
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 418, 535, 584
BstNI	CCWGG	2 cut(s)	173, 582
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	4 cut(s)	136, 137, 171, 580
BsuRI	GGCC	2 cut(s)	512, 641
BtsCI	GGATG	3 cut(s)	41, 906, 943
BtsIMutI	CAGTG	5 cut(s)	567, 602, 651, 870, 963
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	1 cut(s)	131
Cfr13I	GGNCC	3 cut(s)	288, 510, 929
Cfr9I	CCCGGG	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	6 cut(s)	105, 130, 226, 409, 551, 694
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	4 cut(s)	249, 299, 643, 945
DpnI	GATC	2 cut(s)	304, 896
DpnII	GATC	2 cut(s)	302, 894
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	45, 932
Eco24I	GRGCYC	2 cut(s)	580, 589
Eco32I	GATATC	1 cut(s)	961
Eco47I	GGWCC	2 cut(s)	288, 929
Eco88I	CYCGRG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	929
EcoRII	CCWGG	2 cut(s)	171, 580
EcoRV	GATATC	1 cut(s)	961
EcoT14I	CCWWGG	2 cut(s)	45, 932
EcoT38I	GRGCYC	2 cut(s)	580, 589
ErhI	CCWWGG	2 cut(s)	45, 932
FaeI	CATG	6 cut(s)	108, 133, 229, 412, 554, 697
FalI	AAGNNNNNCTT	4 cut(s)	702, 734, 938, 970
FatI	CATG	6 cut(s)	104, 129, 225, 408, 550, 693
FokI	GGATG	3 cut(s)	28, 913, 950
FriOI	GRGCYC	2 cut(s)	580, 589
FspBI	CTAG	1 cut(s)	672
HaeIII	GGCC	2 cut(s)	512, 641
HapII	CCGG	3 cut(s)	138, 667, 898
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	6 cut(s)	108, 133, 229, 412, 554, 697
HindIII	AAGCTT	1 cut(s)	947
HinfI	GANTC	2 cut(s)	164, 233
HpaII	CCGG	3 cut(s)	138, 667, 898
HphI	GGTGA	2 cut(s)	196, 472
Hpy166II	GTNNAC	2 cut(s)	13, 767
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	3 cut(s)	73, 335, 898
Hpy8I	GTNNAC	2 cut(s)	13, 767
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	5 cut(s)	7, 520, 571, 743, 874
HpyCH4IV	ACGT	3 cut(s)	198, 208, 339
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 418, 535, 584
HpyF3I	CTNAG	4 cut(s)	249, 299, 643, 945
HpySE526I	ACGT	3 cut(s)	198, 208, 339
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	6 cut(s)	108, 133, 229, 412, 554, 697
Kpn2I	TCCGGA	1 cut(s)	897
Kzo9I	GATC	2 cut(s)	302, 894
LmnI	GCTCC	5 cut(s)	466, 500, 569, 583, 730
LweI	GCATC	1 cut(s)	891
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	3 cut(s)	198, 208, 339
MaeIII	GTNAC	6 cut(s)	209, 340, 413, 514, 733, 868
MalI	GATC	2 cut(s)	304, 896
MboI	GATC	2 cut(s)	302, 894
MboII	GAAGA	3 cut(s)	46, 90, 188
MhlI	GDGCHC	2 cut(s)	580, 589
MluCI	AATT	2 cut(s)	35, 499
MlyI	GAGTC	2 cut(s)	158, 227
MnlI	CCTC	9 cut(s)	106, 119, 266, 308, 320, 374, 652, 674, 934
MroI	TCCGGA	1 cut(s)	897
MseI	TTAA	1 cut(s)	747
MspI	CCGG	3 cut(s)	138, 667, 898
MspR9I	CCNGG	4 cut(s)	138, 139, 173, 582
Mva1269I	GAATGC	2 cut(s)	196, 631
MvaI	CCWGG	2 cut(s)	173, 582
MwoI	GCNNNNNNNGC	4 cut(s)	26, 418, 535, 584
NciI	CCSGG	2 cut(s)	138, 139
NdeII	GATC	2 cut(s)	302, 894
NlaIII	CATG	6 cut(s)	108, 133, 229, 412, 554, 697
NlaIV	GGNNCC	5 cut(s)	362, 462, 565, 579, 930
NmuCI	GTSAC	4 cut(s)	209, 340, 514, 868
NspI	RCATGY	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	32
PaeI	GCATGC	1 cut(s)	133
PctI	GAATGC	2 cut(s)	196, 631
PflFI	GACNNNGTC	1 cut(s)	236
PfoI	TCCNGGA	1 cut(s)	171
PleI	GAGTC	2 cut(s)	158, 227
PpsI	GAGTC	2 cut(s)	158, 227
PpuMI	RGGWCCY	1 cut(s)	929
Psp1406I	AACGTT	1 cut(s)	198
Psp5II	RGGWCCY	1 cut(s)	929
Psp6I	CCWGG	2 cut(s)	171, 580
PspGI	CCWGG	2 cut(s)	171, 580
PspN4I	GGNNCC	5 cut(s)	362, 462, 565, 579, 930
PspPI	GGNCC	3 cut(s)	288, 510, 929
PspPPI	RGGWCCY	1 cut(s)	929
PsyI	GACNNNGTC	1 cut(s)	236
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	747
Sau3AI	GATC	2 cut(s)	302, 894
Sau96I	GGNCC	3 cut(s)	288, 510, 929
SchI	GAGTC	2 cut(s)	158, 227
ScrFI	CCNGG	4 cut(s)	138, 139, 173, 582
SduI	GDGCHC	2 cut(s)	580, 589
SfaNI	GCATC	1 cut(s)	891
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	2 cut(s)	288, 929
SmaI	CCCGGG	1 cut(s)	139
SphI	GCATGC	1 cut(s)	133
Sse9I	AATT	2 cut(s)	35, 499
SspMI	CTAG	1 cut(s)	672
StyD4I	CCNGG	4 cut(s)	136, 137, 171, 580
StyI	CCWWGG	2 cut(s)	45, 932
TaaI	ACNGT	5 cut(s)	7, 520, 571, 743, 874
TaiI	ACGT	3 cut(s)	201, 211, 342
TaqI	TCGA	4 cut(s)	32, 57, 231, 503
TasI	AATT	2 cut(s)	35, 499
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TscAI	CASTG	5 cut(s)	574, 609, 651, 877, 970
TseFI	GTSAC	4 cut(s)	209, 340, 514, 868
Tsp45I	GTSAC	4 cut(s)	209, 340, 514, 868
TspDTI	ATGAA	5 cut(s)	30, 203, 397, 427, 640
TspGWI	ACGGA	3 cut(s)	138, 752, 873
TspMI	CCCGGG	1 cut(s)	137
TspRI	CASTG	5 cut(s)	574, 609, 651, 877, 970
Tth111I	GACNNNGTC	1 cut(s)	236
VpaK11BI	GGWCC	2 cut(s)	288, 929
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	1 cut(s)	133
XmaI	CCCGGG	1 cut(s)	137
XspI	CTAG	1 cut(s)	672
ZraI	GACGTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.