Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003042

Physical Location & Seq

Genomic Coordinates Forward (+)

37953196 .. 37956545

Gene Structure 3350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG226100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGAGTGAAGTGATCACCTCTCCGACTCGACCCAGATGGCGAAAGGTTGCATATGGAGGCATGCAACCGGGGTTTGATGACAATCACACGGACGATTCATTCCTCGAAGAAATGGTGATGAATGCCAATGTTGTTAAAAGGGACATTCTCAAAGTCATGCTGGATTCTGTTTCGATATCCCAGTACCTCTGCATTGTTGCTCTCGTGGGTTTGGTCTGGACCTACACCCTCAGATCAATCCTCAATGAAAACTCACTCTTGCTTCTTGATGTCACTCTTCTTGGTTTGGGATTCCTTGTTCTGCTTTTAACTAAAGAAATGCTTTCATTCAATCTGTTCCTGCGTTACTTGCTCAACATTTCGTTTTTCATTAGTGGTTTGTATGTTTTAGCTCCAATATACCAAACACTCACCACTTCCATTAGCTCCAATTCCATTTGGGCCGTTACGGTTGCACTACTTGTGCTACATTTATTCCTCCATGACTACAATGGATCCACGGTCAGGGCTCCCGGGGCTCTGCACAATCCCACATTGACAAGTTGCATCTCTTTGAATGCTTCTGTTGTGGCCTCGGTGTTCATTGCTTCGTGCCTCCGGTCCAGGCTGCTTGTTTTCGCAATCATGCTTTTCTCTTTGCAAGTGTTCCTTTTCGCTCCGTTGGTTACTTACTGTATTAAGAAGTATTCCTTTCGTTTGCACCTGTGGTTTTCTTTTGGGCTGATGATTGCGACATTGGCTTTTGTTTATACCCTGCATTTGTTACTTTTTGTGATGTTGTTAGGATTGTTGATTTTTGTCACTGTGGTTTGTCCATATTGGCTGATCCGGATGCAAGAATACAAGTTTGAAATAGCTGGTCCTTGGGATGAGGCTAAGCTTTGCTTTGATATCACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

GPI2

Protein Analysis

301

Amino Acids

34.13

Weight (kDa)

6.58

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GPI2	PF06432	14 - 291	4.4e-72	Phosphatidylinositol N-acetylglucosaminyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34980
fragaria_vesca	FvH4_1g22930 FvH4_2g14913
malus_domestica	MD05G1011700.v1.1 MD12G1011000.v1.1
prunus_persica	Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.7G012900_v2.0.a1 Prupe.8G016600_v2.0.a1
pyrus_communis	pycom12g00850
rosa_chinensis	RchiOBHm_Chr3g0496061 RchiOBHm_Chr6g0277521
rosa_laevigata	RLG00000013295 RLG00000022566
rosa_multiflora	Rmu_sc0003910.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389600 Rroxscaffold_7G00191250
rosa_rugosa	Rorug03G0279300 Rorug06G0109400 Rorug06G0109500
rosa_samantha	Rh3AG326300 Rh3BG362600 Rh3CG358700 Rh3DG362000 Rh6AG219700 Rh6BG223600 Rh6CG226100 Rh6DG216500
rosa_wichuraiana	Rw3G028570 Rw6G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	831
AclWI	GGATC	3 cut(s)	492, 505, 823
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	507
AgsI	TTSAA	3 cut(s)	334, 559, 854
AjnI	CCWGG	1 cut(s)	605
AloI	GAACNNNNNNTCC	2 cut(s)	285, 317
AluBI	AGCT	4 cut(s)	395, 429, 860, 883
AluI	AGCT	4 cut(s)	395, 429, 860, 883
AlwI	GGATC	3 cut(s)	492, 505, 823
Ama87I	CYCGRG	1 cut(s)	515
Aor13HI	TCCGGA	1 cut(s)	831
AoxI	GGCC	2 cut(s)	444, 573
ApeKI	GCWGC	1 cut(s)	610
AspS9I	GGNCC	4 cut(s)	222, 444, 603, 863
AsuC2I	CCSGG	3 cut(s)	72, 516, 517
AsuHPI	GGTGA	3 cut(s)	10, 130, 406
AvaI	CYCGRG	1 cut(s)	515
AvaII	GGWCC	3 cut(s)	222, 603, 863
BamHI	GGATCC	1 cut(s)	497
BanII	GRGCYC	2 cut(s)	514, 523
BauI	CACGAG	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	597
BccI	CCATC	1 cut(s)	33
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	1 cut(s)	607
BclI	TGATCA	1 cut(s)	15
BcnI	CCSGG	3 cut(s)	72, 516, 517
BisI	GCNGC	1 cut(s)	611
BlpI	GCTNAGC	1 cut(s)	879
BlsI	GCNGC	1 cut(s)	612
Bme1390I	CCNGG	4 cut(s)	72, 516, 517, 607
Bme18I	GGWCC	3 cut(s)	222, 603, 863
BmeT110I	CYCGRG	1 cut(s)	515
BmgT120I	GGNCC	4 cut(s)	222, 444, 603, 863
BmiI	GGNNCC	2 cut(s)	499, 513
BmrFI	CCNGG	4 cut(s)	72, 516, 517, 607
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	2 cut(s)	558, 825
BmuI	ACTGGG	1 cut(s)	178
Bpu1102I	GCTNAGC	1 cut(s)	879
BpuMI	CCSGG	3 cut(s)	72, 516, 517
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	6 cut(s)	71, 501, 515, 516, 576, 866
BsaWI	WCCGGW	2 cut(s)	600, 831
Bsc4I	CCNNNNNNNGG	1 cut(s)	507
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	585
Bse8I	GATNNNNATC	1 cut(s)	84
BseAI	TCCGGA	1 cut(s)	831
BseBI	CCWGG	1 cut(s)	607
BseDI	CCNNGG	6 cut(s)	71, 501, 515, 516, 576, 866
BseGI	GGATG	2 cut(s)	840, 877
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	507
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	597
BsgI	GTGCAG	1 cut(s)	509
BshFI	GGCC	2 cut(s)	446, 575
BsiHKCI	CYCGRG	1 cut(s)	515
BsiSI	CCGG	4 cut(s)	71, 516, 601, 832
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	2 cut(s)	130, 565
BsnI	GGCC	2 cut(s)	446, 575
BsoBI	CYCGRG	1 cut(s)	515
Bsp1286I	GDGCHC	2 cut(s)	514, 523
Bsp13I	TCCGGA	1 cut(s)	831
Bsp143I	GATC	4 cut(s)	15, 236, 497, 828
Bsp1720I	GCTNAGC	1 cut(s)	879
BspANI	GGCC	2 cut(s)	446, 575
BspCNI	CTCAG	1 cut(s)	246
BspEI	TCCGGA	1 cut(s)	831
BspLI	GGNNCC	2 cut(s)	499, 513
BspPI	GGATC	3 cut(s)	492, 505, 823
BsrDI	GCAATG	1 cut(s)	585
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	6 cut(s)	71, 501, 515, 516, 576, 866
BssMI	GATC	4 cut(s)	15, 236, 497, 828
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	866
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	607
Bst4CI	ACNGT	4 cut(s)	454, 505, 677, 808
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	2 cut(s)	233, 879
BstDSI	CCRYGG	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	840, 877
BstKTI	GATC	4 cut(s)	18, 239, 500, 831
BstMBI	GATC	4 cut(s)	15, 236, 497, 828
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 518, 740
BstNI	CCWGG	1 cut(s)	607
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	4 cut(s)	70, 514, 515, 605
BstV1I	GCAGC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	497
BsuRI	GGCC	2 cut(s)	446, 575
BtgI	CCRYGG	1 cut(s)	501
BtsCI	GGATG	2 cut(s)	840, 877
BtsIMutI	CAGTG	2 cut(s)	804, 897
Cac8I	GCNNGC	1 cut(s)	65
Cfr13I	GGNCC	4 cut(s)	222, 444, 603, 863
Cfr9I	CCCGGG	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	4 cut(s)	64, 160, 485, 628
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	233, 879
DpnI	GATC	4 cut(s)	17, 238, 499, 830
DpnII	GATC	4 cut(s)	15, 236, 497, 828
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	866
Eco24I	GRGCYC	2 cut(s)	514, 523
Eco32I	GATATC	2 cut(s)	180, 895
Eco47I	GGWCC	3 cut(s)	222, 603, 863
Eco88I	CYCGRG	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	605
EcoRV	GATATC	2 cut(s)	180, 895
EcoT14I	CCWWGG	1 cut(s)	866
EcoT38I	GRGCYC	2 cut(s)	514, 523
ErhI	CCWWGG	1 cut(s)	866
FaeI	CATG	4 cut(s)	67, 163, 488, 631
FalI	AAGNNNNNCTT	8 cut(s)	309, 341, 636, 668, 677, 709, 872, 904
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	4 cut(s)	63, 159, 484, 627
FauNDI	CATATG	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	611
FokI	GGATG	2 cut(s)	847, 884
FriOI	GRGCYC	2 cut(s)	514, 523
Fsp4HI	GCNGC	1 cut(s)	611
GluI	GCNGC	1 cut(s)	611
HaeIII	GGCC	2 cut(s)	446, 575
HapII	CCGG	4 cut(s)	71, 516, 601, 832
Hin1II	CATG	4 cut(s)	67, 163, 488, 631
HindIII	AAGCTT	1 cut(s)	881
HinfI	GANTC	4 cut(s)	28, 98, 167, 294
HpaII	CCGG	4 cut(s)	71, 516, 601, 832
HphI	GGTGA	3 cut(s)	10, 130, 406
Hpy188I	TCNGA	2 cut(s)	27, 236
Hpy188III	TCNNGA	3 cut(s)	220, 269, 832
HpyCH4III	ACNGT	4 cut(s)	454, 505, 677, 808
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 518, 740
HpyF3I	CTNAG	2 cut(s)	233, 879
Hsp92II	CATG	4 cut(s)	67, 163, 488, 631
Kpn2I	TCCGGA	1 cut(s)	831
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	15, 236, 497, 828
LmnI	GCTCC	4 cut(s)	400, 434, 517, 664
Lsp1109I	GCAGC	1 cut(s)	597
LweI	GCATC	2 cut(s)	558, 825
MaeIII	GTNAC	6 cut(s)	274, 347, 448, 667, 765, 802
MalI	GATC	4 cut(s)	17, 238, 499, 830
MboI	GATC	4 cut(s)	15, 236, 497, 828
MboII	GAAGA	2 cut(s)	122, 272
MflI	RGATCY	1 cut(s)	497
MhlI	GDGCHC	2 cut(s)	514, 523
MluCI	AATT	1 cut(s)	433
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	50
MroI	TCCGGA	1 cut(s)	831
MseI	TTAA	3 cut(s)	138, 311, 681
MspI	CCGG	4 cut(s)	71, 516, 601, 832
MspR9I	CCNGG	4 cut(s)	72, 516, 517, 607
Mva1269I	GAATGC	2 cut(s)	130, 565
MvaI	CCWGG	1 cut(s)	607
MwoI	GCNNNNNNNGC	3 cut(s)	352, 518, 740
NciI	CCSGG	3 cut(s)	72, 516, 517
NdeI	CATATG	1 cut(s)	55
NdeII	GATC	4 cut(s)	15, 236, 497, 828
NlaIII	CATG	4 cut(s)	67, 163, 488, 631
NlaIV	GGNNCC	2 cut(s)	499, 513
NmuCI	GTSAC	2 cut(s)	274, 802
NspI	RCATGY	1 cut(s)	67
PaeI	GCATGC	1 cut(s)	67
PctI	GAATGC	2 cut(s)	130, 565
PfeI	GAWTC	3 cut(s)	98, 167, 294
PkrI	GCNGC	1 cut(s)	612
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	605
PspN4I	GGNNCC	2 cut(s)	499, 513
PspPI	GGNCC	4 cut(s)	222, 444, 603, 863
PsuI	RGATCY	1 cut(s)	497
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	3 cut(s)	138, 311, 681
SatI	GCNGC	1 cut(s)	611
Sau3AI	GATC	4 cut(s)	15, 236, 497, 828
Sau96I	GGNCC	4 cut(s)	222, 444, 603, 863
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	4 cut(s)	72, 516, 517, 607
SduI	GDGCHC	2 cut(s)	514, 523
SetI	ASST	9 cut(s)	23, 51, 192, 227, 397, 431, 708, 862, 885
SfaNI	GCATC	2 cut(s)	558, 825
SinI	GGWCC	3 cut(s)	222, 603, 863
SmaI	CCCGGG	1 cut(s)	517
SphI	GCATGC	1 cut(s)	67
Sse9I	AATT	1 cut(s)	433
StyD4I	CCNGG	4 cut(s)	70, 514, 515, 605
StyI	CCWWGG	1 cut(s)	866
TaaI	ACNGT	4 cut(s)	454, 505, 677, 808
TaqI	TCGA	3 cut(s)	31, 108, 176
TasI	AATT	1 cut(s)	433
TfiI	GAWTC	3 cut(s)	98, 167, 294
Tru1I	TTAA	3 cut(s)	138, 311, 681
Tru9I	TTAA	3 cut(s)	138, 311, 681
TscAI	CASTG	2 cut(s)	811, 904
TseFI	GTSAC	2 cut(s)	274, 802
TseI	GCWGC	1 cut(s)	610
Tsp45I	GTSAC	2 cut(s)	274, 802
TspDTI	ATGAA	6 cut(s)	90, 137, 264, 318, 361, 574
TspGWI	ACGGA	2 cut(s)	107, 651
TspMI	CCCGGG	1 cut(s)	515
TspRI	CASTG	2 cut(s)	811, 904
VpaK11BI	GGWCC	3 cut(s)	222, 603, 863
XceI	RCATGY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	491
XmaI	CCCGGG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.