Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009919

Physical Location & Seq

Genomic Coordinates Forward (+)

15228714 .. 15230663

Gene Structure 1950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGGAAGAACATCGATGCGAGACGCCTGAAGGTCACCGTCTCTGCGTTAACAACTGCGGTTTCTTCGGAAGCTCAGCGACAATGAATCTATGTTCAAACTGTTACGGCGATCTCTGTCTCAAACAACAACAACAAGCTTCCATGAAATCAACCGTCGAATCATCTCTCTCTCCGGTGATCGCACCTGTTCTCGAAAACTACGCGGCGGAGTTAGAGATCCCGACGACGAAGAAGACAGAGGAGAAAAAACCGATTCAAATTCCGACGGAGCAACCGTCTCCGCCGCAACGGCCGAATCGATGCACCGTATGTAGGAAACGGGTCGGGTTAACCGGGTTTATGTGTCGGTGTGGGACGACTTTTTGTGGGAGTCATAGGTATCCGGAGGTTCATGGTTGTACGTTTGATTTCAAATCGGCGGGACGTGAAGAGATCGCGAAAGCTAATCCGTTGGTTATTGCGGCGAAGCTTCAGAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010033 GO:0010200 GO:0010243 GO:0042221 GO:0042493 GO:0050896 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

161

Amino Acids

17.78

Weight (kDa)

8.45

Isoelectric Point (pI)

53.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	14 - 36	1e-10	A20-like zinc finger
zf-AN1	PF01428	102 - 138	5.6e-10	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36320 AT3G52800 AT3G52800
fragaria_vesca	FvH4_4g02120 FvH4_6g18400
malus_domestica	MD12G1023200.v1.1 MD14G1020200.v1.1
prunus_persica	Prupe.7G113400_v2.0.a1 Prupe.7G113400_v2.0.a1
pyrus_communis	pycom12g02160 pycom14g01980
rosa_chinensis	RchiOBHm_Chr3g0472891
rosa_laevigata	RLG00000024047
rosa_roxburghii	Rroxscaffold_6G00408500
rosa_rugosa	Rorug03G0129200 Rorug03G0129300
rosa_samantha	Rh3AG181300 Rh3BG207500 Rh3CG204800 Rh3DG168300
rosa_wichuraiana	Rw3G016190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	206, 440
AccIII	TCCGGA	1 cut(s)	385
AciI	CCGC	8 cut(s)	5, 60, 206, 209, 284, 287, 422, 464
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	2 cut(s)	51, 458
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	3 cut(s)	99, 260, 415
AjiI	CACGTC	1 cut(s)	428
AluBI	AGCT	4 cut(s)	75, 140, 446, 472
AluI	AGCT	4 cut(s)	75, 140, 446, 472
Alw26I	GTCTC	4 cut(s)	17, 47, 125, 285
AlwI	GGATC	1 cut(s)	214
Aor13HI	TCCGGA	1 cut(s)	385
AoxI	GGCC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	261
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	29, 190
BbsI	GAAGAC	1 cut(s)	242
BceAI	ACGGC	2 cut(s)	124, 308
BciVI	GTATCC	1 cut(s)	393
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	4 cut(s)	17, 47, 125, 285
BfuI	GTATCC	1 cut(s)	393
BglI	GCCNNNNNGGC	1 cut(s)	292
BisI	GCNGC	3 cut(s)	207, 287, 465
BlpI	GCTNAGC	1 cut(s)	76
BlsI	GCNGC	3 cut(s)	208, 288, 466
Bme1390I	CCNGG	1 cut(s)	337
BmgBI	CACGTC	1 cut(s)	428
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	8, 293
BpiI	GAAGAC	1 cut(s)	242
Bpu1102I	GCTNAGC	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	337
Bsa29I	ATCGAT	2 cut(s)	16, 301
BsaHI	GRCGYC	1 cut(s)	26
BsaWI	WCCGGW	2 cut(s)	175, 385
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	385
BseCI	ATCGAT	2 cut(s)	16, 301
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	257
BseX3I	CGGCCG	1 cut(s)	293
Bsh1236I	CGCG	2 cut(s)	206, 440
Bsh1285I	CGRYCG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	295
BshVI	ATCGAT	2 cut(s)	16, 301
BsiEI	CGRYCG	1 cut(s)	296
BsiSI	CCGG	3 cut(s)	176, 336, 386
BslFI	GGGAC	2 cut(s)	370, 438
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmAI	GTCTC	4 cut(s)	17, 47, 125, 285
BsmBI	CGTCTC	3 cut(s)	17, 47, 285
BsmFI	GGGAC	2 cut(s)	370, 438
BsnI	GGCC	1 cut(s)	295
Bsp13I	TCCGGA	1 cut(s)	385
Bsp143I	GATC	4 cut(s)	112, 180, 219, 435
Bsp1720I	GCTNAGC	1 cut(s)	76
Bsp68I	TCGCGA	1 cut(s)	440
BspACI	CCGC	8 cut(s)	5, 60, 206, 209, 284, 287, 422, 464
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	89
BspDI	ATCGAT	2 cut(s)	16, 301
BspEI	TCCGGA	1 cut(s)	385
BspFNI	CGCG	2 cut(s)	206, 440
BspPI	GGATC	1 cut(s)	214
BssMI	GATC	4 cut(s)	112, 180, 219, 435
BssNI	GRCGYC	1 cut(s)	26
Bst4CI	ACNGT	5 cut(s)	41, 104, 157, 279, 310
Bst6I	CTCTTC	1 cut(s)	426
BstACI	GRCGYC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	76
BstEII	GGTNACC	1 cut(s)	35
BstFNI	CGCG	2 cut(s)	206, 440
BstKTI	GATC	4 cut(s)	115, 183, 222, 438
BstMAI	GTCTC	4 cut(s)	17, 47, 125, 285
BstMBI	GATC	4 cut(s)	112, 180, 219, 435
BstMCI	CGRYCG	1 cut(s)	296
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	335
BstUI	CGCG	2 cut(s)	206, 440
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BstZI	CGGCCG	1 cut(s)	293
Bsu15I	ATCGAT	2 cut(s)	16, 301
BsuI	GTATCC	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	295
BsuTUI	ATCGAT	2 cut(s)	16, 301
BtrI	CACGTC	1 cut(s)	428
BtuMI	TCGCGA	1 cut(s)	440
ClaI	ATCGAT	2 cut(s)	16, 301
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	2 cut(s)	145, 395
CviJI	RGCY	5 cut(s)	75, 140, 295, 446, 472
CviKI_1	RGCY	5 cut(s)	75, 140, 295, 446, 472
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	4 cut(s)	114, 182, 221, 437
DpnII	GATC	4 cut(s)	112, 180, 219, 435
EaeI	YGGCCR	1 cut(s)	293
EagI	CGGCCG	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
EciI	GGCGGA	3 cut(s)	20, 224, 273
EclXI	CGGCCG	1 cut(s)	293
Eco52I	CGGCCG	1 cut(s)	293
Eco57I	CTGAAG	2 cut(s)	51, 458
Eco91I	GGTNACC	1 cut(s)	35
EcoO65I	GGTNACC	1 cut(s)	35
Esp3I	CGTCTC	3 cut(s)	17, 47, 285
FaeI	CATG	2 cut(s)	148, 398
FaiI	YATR	7 cut(s)	94, 146, 313, 344, 378, 396, 484
FaqI	GGGAC	2 cut(s)	370, 438
FatI	CATG	2 cut(s)	144, 394
FauI	CCCGC	1 cut(s)	415
Fnu4HI	GCNGC	3 cut(s)	207, 287, 465
Fsp4HI	GCNGC	3 cut(s)	207, 287, 465
GluI	GCNGC	3 cut(s)	207, 287, 465
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	3 cut(s)	176, 336, 386
HgaI	GACGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	148, 398
HincII	GTYRAC	2 cut(s)	52, 333
HindII	GTYRAC	2 cut(s)	52, 333
HindIII	AAGCTT	2 cut(s)	138, 470
HinfI	GANTC	5 cut(s)	88, 161, 256, 298, 373
HpaI	GTTAAC	2 cut(s)	52, 333
HpaII	CCGG	3 cut(s)	176, 336, 386
HphI	GGTGA	2 cut(s)	29, 190
Hpy166II	GTNNAC	2 cut(s)	52, 333
Hpy188I	TCNGA	3 cut(s)	71, 267, 477
Hpy188III	TCNNGA	4 cut(s)	194, 223, 386, 439
Hpy8I	GTNNAC	2 cut(s)	52, 333
Hpy99I	CGWCG	4 cut(s)	161, 229, 232, 271
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	5 cut(s)	41, 104, 157, 279, 310
HpyCH4IV	ACGT	2 cut(s)	404, 427
HpyCH4V	TGCA	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	1 cut(s)	76
HpySE526I	ACGT	2 cut(s)	404, 427
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	148, 398
Kpn2I	TCCGGA	1 cut(s)	385
KspAI	GTTAAC	2 cut(s)	52, 333
Kzo9I	GATC	4 cut(s)	112, 180, 219, 435
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	42, 189, 201, 349, 399
LweI	GCATC	2 cut(s)	8, 293
MaeII	ACGT	2 cut(s)	404, 427
MaeIII	GTNAC	2 cut(s)	35, 104
MalI	GATC	4 cut(s)	114, 182, 221, 437
MboI	GATC	4 cut(s)	112, 180, 219, 435
MboII	GAAGA	5 cut(s)	20, 58, 244, 247, 443
MflI	RGATCY	1 cut(s)	219
MluCI	AATT	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	382
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	2 cut(s)	235, 382
MroI	TCCGGA	1 cut(s)	385
MseI	TTAA	2 cut(s)	51, 332
MspI	CCGG	3 cut(s)	176, 336, 386
MspR9I	CCNGG	1 cut(s)	337
MvnI	CGCG	2 cut(s)	206, 440
MwoI	GCNNNNNNNGC	1 cut(s)	292
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	4 cut(s)	112, 180, 219, 435
NlaIII	CATG	2 cut(s)	148, 398
NmuCI	GTSAC	1 cut(s)	35
NruI	TCGCGA	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	2 cut(s)	275, 298
PfeI	GAWTC	4 cut(s)	88, 161, 256, 298
PkrI	GCNGC	3 cut(s)	208, 288, 466
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
PspEI	GGTNACC	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	219
RruI	TCGCGA	1 cut(s)	440
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	51, 332
SatI	GCNGC	3 cut(s)	207, 287, 465
Sau3AI	GATC	4 cut(s)	112, 180, 219, 435
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	337
SfaNI	GCATC	2 cut(s)	8, 293
Sse9I	AATT	1 cut(s)	261
SsiI	CCGC	8 cut(s)	5, 60, 206, 209, 284, 287, 422, 464
StyD4I	CCNGG	1 cut(s)	335
TaaI	ACNGT	5 cut(s)	41, 104, 157, 279, 310
TaiI	ACGT	2 cut(s)	407, 430
TaqI	TCGA	4 cut(s)	16, 159, 195, 301
TasI	AATT	1 cut(s)	261
TauI	GCSGC	3 cut(s)	209, 289, 467
TfiI	GAWTC	4 cut(s)	88, 161, 256, 298
Tru1I	TTAA	2 cut(s)	51, 332
Tru9I	TTAA	2 cut(s)	51, 332
TseFI	GTSAC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	3 cut(s)	101, 161, 383
TspGWI	ACGGA	2 cut(s)	284, 441
XapI	RAATTY	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.