Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009919

Physical Location & Seq

Genomic Coordinates Forward (+)

1540725 .. 1541294

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCGGAAGAGCACAGATGCGAGGCCCCAGAAGGTCACCACCTCTGCGCAAACAACTGCGGATTCTTCGGCAGCCCGGCCACCATGAACCTCTGCTCCAAATGCTACAGAGACTTCTGCCTCAAGGAGCAGCAGCAGGCCTCGATCAAATCCACCGTCGAAGCCTCCCTCTCCGCCTCCGCTGCCGATGCCGCTTCTTCCTCTCTCTCCGCTCCTTCTTCCCCGCCTTCAACATCCTTGCCTGCCTTTCCGCCAGCGATCGAGACTCTCTGCCAACCTCCGCCCCCGGCCTTGACTTTGCCGGAGGTAGCCGGAGATATAATCGGTGAGCCCGCTGAAGTTGTCCGGGCTCCTGAGGTGGCTACGGTGGTGTCGCAGCCGAACCGGTGCACCGTTTGCAGGAAACGGGTCGGGTTGACCGGGTTCAAGTGCAGGTGCGGGACCACGTTCTGCGGGGTTCACAGATACCCCGAGAAGCACGCGTGCTCGTTCGATTTCAAGACCCTCGGGAGGGAGGAGATCGCCAGGAGCAACCCTTTGGTCATAGCCGAGAAGCTCGAGAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

190

Amino Acids

20.18

Weight (kDa)

6.51

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	15 - 37	3.9e-13	A20-like zinc finger
zf-AN1	PF01428	130 - 166	6.6e-10	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36320 AT3G52800 AT3G52800
fragaria_vesca	FvH4_4g02120 FvH4_6g18400
malus_domestica	MD12G1023200.v1.1 MD14G1020200.v1.1
prunus_persica	Prupe.7G113400_v2.0.a1 Prupe.7G113400_v2.0.a1
pyrus_communis	pycom12g02160 pycom14g01980
rosa_chinensis	RchiOBHm_Chr3g0472891
rosa_laevigata	RLG00000024047
rosa_roxburghii	Rroxscaffold_6G00408500
rosa_rugosa	Rorug03G0129200 Rorug03G0129300
rosa_samantha	Rh3AG181300 Rh3BG207500 Rh3CG204800 Rh3DG168300
rosa_wichuraiana	Rw3G016190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	423
Acc16I	TGCGCA	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	423
AccBSI	CCGCTC	1 cut(s)	212
AccII	CGCG	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	357
AfiI	CCNNNNNNNGG	3 cut(s)	399, 510, 511
AflIII	ACRYGT	1 cut(s)	480
AgeI	ACCGGT	1 cut(s)	384
AgsI	TTSAA	3 cut(s)	231, 427, 499
AjnI	CCWGG	1 cut(s)	524
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	1 cut(s)	556
AluI	AGCT	1 cut(s)	556
Alw21I	GWGCWC	3 cut(s)	15, 392, 488
Alw26I	GTCTC	2 cut(s)	105, 257
Alw44I	GTGCAC	1 cut(s)	388
Ama87I	CYCGRG	3 cut(s)	470, 506, 557
AoxI	GGCC	4 cut(s)	24, 78, 138, 288
ApaLI	GTGCAC	1 cut(s)	388
ApeKI	GCWGC	5 cut(s)	72, 130, 133, 182, 376
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AsiGI	ACCGGT	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	25, 441
AsuC2I	CCSGG	4 cut(s)	77, 287, 347, 421
AsuHPI	GGTGA	2 cut(s)	29, 338
AvaI	CYCGRG	3 cut(s)	470, 506, 557
AvaII	GGWCC	1 cut(s)	441
AxyI	CCTNAGG	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	392
BanII	GRGCYC	2 cut(s)	333, 352
Bbv12I	GWGCWC	3 cut(s)	15, 392, 488
BbvI	GCAGC	5 cut(s)	84, 142, 145, 169, 388
BciT130I	CCWGG	1 cut(s)	526
BcnI	CCSGG	4 cut(s)	77, 287, 347, 421
BcoDI	GTCTC	2 cut(s)	105, 257
BfmI	CTRYAG	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	423
BisI	GCNGC	6 cut(s)	73, 131, 134, 183, 192, 377
BlsI	GCNGC	6 cut(s)	74, 132, 135, 184, 193, 378
Bme1390I	CCNGG	5 cut(s)	77, 287, 347, 421, 526
Bme18I	GGWCC	1 cut(s)	441
BmeT110I	CYCGRG	3 cut(s)	470, 506, 557
BmgT120I	GGNCC	2 cut(s)	25, 441
BmiI	GGNNCC	3 cut(s)	27, 351, 442
BmrFI	CCNGG	5 cut(s)	77, 287, 347, 421, 526
BmsI	GCATC	2 cut(s)	8, 178
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	4 cut(s)	77, 287, 347, 421
BsaJI	CCNNGG	2 cut(s)	285, 505
BsaWI	WCCGGW	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	3 cut(s)	399, 510, 511
Bse118I	RCCGGY	1 cut(s)	384
Bse21I	CCTNAGG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	526
BseDI	CCNNGG	2 cut(s)	285, 505
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	3 cut(s)	399, 510, 511
BseMII	CTCAG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	5 cut(s)	84, 142, 145, 169, 388
BsgI	GTGCAG	1 cut(s)	451
Bsh1236I	CGCG	1 cut(s)	482
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	4 cut(s)	26, 80, 140, 290
BshTI	ACCGGT	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	261
BsiHKAI	GWGCWC	3 cut(s)	15, 392, 488
BsiHKCI	CYCGRG	3 cut(s)	470, 506, 557
BsiSI	CCGG	7 cut(s)	77, 287, 302, 312, 346, 385, 420
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	3 cut(s)	399, 510, 511
BsmAI	GTCTC	2 cut(s)	105, 257
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	4 cut(s)	26, 80, 140, 290
BsoBI	CYCGRG	3 cut(s)	470, 506, 557
Bsp1286I	GDGCHC	5 cut(s)	15, 333, 352, 392, 488
Bsp143I	GATC	3 cut(s)	144, 258, 519
BspANI	GGCC	4 cut(s)	26, 80, 140, 290
BspCNI	CTCAG	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	482
BspLI	GGNNCC	3 cut(s)	27, 351, 442
BspMI	ACCTGC	1 cut(s)	423
BspQI	GCTCTTC	1 cut(s)	3
BsrBI	CCGCTC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	384
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	285, 505
BssMI	GATC	3 cut(s)	144, 258, 519
Bst2UI	CCWGG	1 cut(s)	526
Bst4CI	ACNGT	3 cut(s)	157, 367, 394
Bst6I	CTCTTC	1 cut(s)	3
BstAPI	GCANNNNNTGC	1 cut(s)	396
BstC8I	GCNNGC	6 cut(s)	138, 243, 255, 333, 480, 484
BstDEI	CTNAG	1 cut(s)	354
BstEII	GGTNACC	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	233
BstFNI	CGCG	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	3 cut(s)	147, 261, 522
BstMAI	GTCTC	2 cut(s)	105, 257
BstMBI	GATC	3 cut(s)	144, 258, 519
BstMCI	CGRYCG	1 cut(s)	261
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 182, 188, 191, 396
BstNI	CCWGG	1 cut(s)	526
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	5 cut(s)	75, 285, 345, 419, 524
BstSFI	CTRYAG	1 cut(s)	106
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	5 cut(s)	84, 142, 145, 169, 388
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	4 cut(s)	26, 80, 140, 290
BtsCI	GGATG	1 cut(s)	233
BveI	ACCTGC	1 cut(s)	423
Cac8I	GCNNGC	6 cut(s)	138, 243, 255, 333, 480, 484
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	25, 441
CspAI	ACCGGT	1 cut(s)	384
CviAII	CATG	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	3 cut(s)	146, 260, 521
DpnII	GATC	3 cut(s)	144, 258, 519
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
EciI	GGCGGA	4 cut(s)	20, 163, 240, 270
Eco147I	AGGCCT	1 cut(s)	140
Eco24I	GRGCYC	2 cut(s)	333, 352
Eco47I	GGWCC	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	357
Eco81I	CCTNAGG	1 cut(s)	354
Eco88I	CYCGRG	3 cut(s)	470, 506, 557
Eco91I	GGTNACC	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	25
EcoO65I	GGTNACC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	524
EcoT38I	GRGCYC	2 cut(s)	333, 352
FaeI	CATG	1 cut(s)	88
FaiI	YATR	3 cut(s)	86, 320, 545
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	1 cut(s)	84
FauI	CCCGC	4 cut(s)	231, 340, 431, 446
Fnu4HI	GCNGC	6 cut(s)	73, 131, 134, 183, 192, 377
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	2 cut(s)	333, 352
Fsp4HI	GCNGC	6 cut(s)	73, 131, 134, 183, 192, 377
FspI	TGCGCA	1 cut(s)	49
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	6 cut(s)	73, 131, 134, 183, 192, 377
HaeIII	GGCC	4 cut(s)	26, 80, 140, 290
HapII	CCGG	7 cut(s)	77, 287, 302, 312, 346, 385, 420
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	2 cut(s)	63, 265
HpaII	CCGG	7 cut(s)	77, 287, 302, 312, 346, 385, 420
HphI	GGTGA	2 cut(s)	29, 338
Hpy166II	GTNNAC	3 cut(s)	390, 417, 460
Hpy188III	TCNNGA	5 cut(s)	262, 353, 499, 508, 559
Hpy8I	GTNNAC	3 cut(s)	390, 417, 460
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	3 cut(s)	26, 225, 237
HpyCH4III	ACNGT	3 cut(s)	157, 367, 394
HpyCH4IV	ACGT	1 cut(s)	446
HpyCH4V	TGCA	3 cut(s)	390, 399, 432
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 182, 188, 191, 396
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	446
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	144, 258, 519
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	5 cut(s)	101, 127, 217, 355, 528
Lsp1109I	GCAGC	5 cut(s)	84, 142, 145, 169, 388
LweI	GCATC	2 cut(s)	8, 178
MaeII	ACGT	1 cut(s)	446
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	3 cut(s)	146, 260, 521
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	3 cut(s)	144, 258, 519
MboII	GAAGA	4 cut(s)	20, 58, 189, 210
MhlI	GDGCHC	5 cut(s)	15, 333, 352, 392, 488
MluI	ACGCGT	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	259
MspA1I	CMGCKG	2 cut(s)	182, 335
MspI	CCGG	7 cut(s)	77, 287, 302, 312, 346, 385, 420
MspR9I	CCNGG	5 cut(s)	77, 287, 347, 421, 526
MvaI	CCWGG	1 cut(s)	526
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	5 cut(s)	102, 182, 188, 191, 396
NciI	CCSGG	4 cut(s)	77, 287, 347, 421
NdeII	GATC	3 cut(s)	144, 258, 519
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	3 cut(s)	27, 351, 442
NmuCI	GTSAC	1 cut(s)	35
NsbI	TGCGCA	1 cut(s)	49
PaeR7I	CTCGAG	1 cut(s)	557
PaqCI	CACCTGC	1 cut(s)	423
PceI	AGGCCT	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	3
PfeI	GAWTC	1 cut(s)	63
PinAI	ACCGGT	1 cut(s)	384
PkrI	GCNGC	6 cut(s)	74, 132, 135, 184, 193, 378
Ple19I	CGATCG	1 cut(s)	261
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	524
PspEI	GGTNACC	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	524
PspN4I	GGNNCC	3 cut(s)	27, 351, 442
PspPI	GGNCC	2 cut(s)	25, 441
PvuI	CGATCG	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	3
SatI	GCNGC	6 cut(s)	73, 131, 134, 183, 192, 377
Sau3AI	GATC	3 cut(s)	144, 258, 519
Sau96I	GGNCC	2 cut(s)	25, 441
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	5 cut(s)	77, 287, 347, 421, 526
SduI	GDGCHC	5 cut(s)	15, 333, 352, 392, 488
SetI	ASST	9 cut(s)	37, 45, 93, 280, 309, 360, 437, 449, 558
SfaNI	GCATC	2 cut(s)	8, 178
SfcI	CTRYAG	1 cut(s)	106
Sfr274I	CTCGAG	1 cut(s)	557
SinI	GGWCC	1 cut(s)	441
SlaI	CTCGAG	1 cut(s)	557
SmlI	CTYRAG	2 cut(s)	122, 557
SmoI	CTYRAG	2 cut(s)	122, 557
SseBI	AGGCCT	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	5 cut(s)	75, 285, 345, 419, 524
TaaI	ACNGT	3 cut(s)	157, 367, 394
TaiI	ACGT	1 cut(s)	449
TaqI	TCGA	5 cut(s)	143, 159, 261, 492, 558
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	5 cut(s)	72, 130, 133, 182, 376
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	101
VneI	GTGCAC	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	441
XhoI	CTCGAG	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.