Rorug03G0129200

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009919
Physical Location & Seq
Reverse (-)
10498288 .. 10498794
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0129200.1

Sequence Viewer

Length: 507 bp
ATGGAGAGGGTGGGTTTTTATTCAAAATTGATGGCTGGACATTTTACATCTTTTTCGTCGTTTATTGAATTTGCTCTTAATAGTTTGACTGTTGATGAAATGAAGTTGTTGGTAATTTTATTATGGGGCAATTGGAAGGAACGTAATGCTGTTGTGCATGGTGAGTTAGAGAAGACACCCGAGGCTATTTTTTATAATTGCTGCTCTATATGGGAAGGGTTGTTGGCGGTCCAGAGATCAAATAGAGTGGAGGGTGGGTTAGCTCAAGGTAGAAGAGCATTACGATGCCAACCTCCTCCATATGGTATTTGGAAATTAAATTGTGATAGAGCTGTCAGTGGGGATAGATTGAATGTGGGGGCTGGAGCTATTATAAGGAATGAAAGAGGTGATCTAGTGGGAGCATGTGGTCAAAGAATTACTCAGCGACTTTCTCCTCTAGCTACGGAGTTGTCAGCTATTAAATTAGGCCTTGAATTGATGCAAGAGAAGGGATGGAGGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

168

Amino Acids

18.74

Weight (kDa)

8.91

Isoelectric Point (pI)

29.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 107 - 167 3.5e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 195, 374
AciI CCGC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 4 cut(s) 24, 68, 352, 476
AluBI AGCT 5 cut(s) 263, 332, 368, 443, 458
AluI AGCT 5 cut(s) 263, 332, 368, 443, 458
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 1 cut(s) 469
ApeKI GCWGC 1 cut(s) 201
ApoI RAATTY 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 173, 401
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 188
BccI CCATC 2 cut(s) 25, 489
BfaI CTAG 2 cut(s) 395, 440
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 229
BmsI GCATC 2 cut(s) 275, 471
BpiI GAAGAC 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 500
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 437
BseRI GAGGAG 2 cut(s) 285, 426
BseXI GCAGC 1 cut(s) 188
BshFI GGCC 1 cut(s) 471
BsiHKCI CYCGRG 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 302
BsnI GGCC 1 cut(s) 471
BsoBI CYCGRG 1 cut(s) 179
Bsp143I GATC 2 cut(s) 236, 391
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 1 cut(s) 436
BspQI GCTCTTC 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 2 cut(s) 236, 391
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 423
BstF5I GGATG 1 cut(s) 500
BstKTI GATC 2 cut(s) 239, 394
BstMBI GATC 2 cut(s) 236, 391
BstNSI RCATGY 1 cut(s) 408
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 471
BtsCI GGATG 1 cut(s) 500
BtsIMutI CAGTG 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 229
CspCI CAANNNNNGTGG 2 cut(s) 228, 263
CviAII CATG 2 cut(s) 158, 405
CviJI RGCY 9 cut(s) 35, 185, 263, 332, 362, 368, 443, 458, 471
CviKI_1 RGCY 9 cut(s) 35, 185, 263, 332, 362, 368, 443, 458, 471
DdeI CTNAG 1 cut(s) 423
DpnI GATC 2 cut(s) 238, 393
DpnII GATC 2 cut(s) 236, 391
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco147I AGGCCT 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 179
FaeI CATG 2 cut(s) 161, 408
FaiI YATR 9 cut(s) 124, 159, 195, 209, 211, 301, 303, 374, 406
FatI CATG 2 cut(s) 157, 404
FauNDI CATATG 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 2 cut(s) 395, 440
GluI GCNGC 1 cut(s) 202
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 1 cut(s) 471
Hin1II CATG 2 cut(s) 161, 408
HphI GGTGA 2 cut(s) 173, 401
Hpy188III TCNNGA 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 130, 209, 484
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 157, 484
HpyF3I CTNAG 1 cut(s) 423
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 2 cut(s) 161, 408
Kzo9I GATC 2 cut(s) 236, 391
LguI GCTCTTC 1 cut(s) 268
LmnI GCTCC 2 cut(s) 365, 401
LpnPI CCDG 3 cut(s) 21, 245, 348
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 2 cut(s) 275, 471
MaeI CTAG 2 cut(s) 395, 440
MaeII ACGT 1 cut(s) 142
MalI GATC 2 cut(s) 238, 393
MboI GATC 2 cut(s) 236, 391
MboII GAAGA 2 cut(s) 184, 285
MfeI CAATTG 1 cut(s) 130
MnlI CCTC 7 cut(s) 175, 244, 303, 306, 380, 447, 492
MseI TTAA 3 cut(s) 78, 317, 462
MslI CAYNNNNRTG 1 cut(s) 283
MunI CAATTG 1 cut(s) 130
NdeI CATATG 1 cut(s) 301
NdeII GATC 2 cut(s) 236, 391
NlaIII CATG 2 cut(s) 161, 408
NspI RCATGY 1 cut(s) 408
PceI AGGCCT 1 cut(s) 471
PciSI GCTCTTC 1 cut(s) 268
PkrI GCNGC 1 cut(s) 203
PsiI TTATAA 2 cut(s) 195, 374
PspPI GGNCC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 283
SapI GCTCTTC 1 cut(s) 268
SaqAI TTAA 3 cut(s) 78, 317, 462
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 2 cut(s) 236, 391
Sau96I GGNCC 1 cut(s) 229
SetI ASST 9 cut(s) 145, 265, 271, 295, 334, 370, 391, 445, 460
SfaNI GCATC 2 cut(s) 275, 471
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
SseBI AGGCCT 1 cut(s) 471
SsiI CCGC 1 cut(s) 227
SspMI CTAG 2 cut(s) 395, 440
StuI AGGCCT 1 cut(s) 471
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 145
Tru1I TTAA 3 cut(s) 78, 317, 462
Tru9I TTAA 3 cut(s) 78, 317, 462
TscAI CASTG 1 cut(s) 343
TseI GCWGC 1 cut(s) 201
TspDTI ATGAA 3 cut(s) 111, 116, 396
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 1 cut(s) 343
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 408
XcmI CCANNNNNNNNNTGG 1 cut(s) 306
XspI CTAG 2 cut(s) 395, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.