Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009919

Physical Location & Seq

Genomic Coordinates Forward (+)

12153816 .. 12155028

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCGGAAGAGCACAGATGCCAAGCACCAGAAGGTCACCGTCTCTGCGCTAACAGCTGCGGATTCTTCGGCAGCCCGGCCACCATGAATCTCTGCTCCAAATGTTACCGAGACTTTTGCCTCAAGGAGCAACAGGAGGCTTCTATCAAATCCACCGTCGAAGCCTCTCTCTCCGCCTCTGTCTCTCCATCGGTGTCGTCGTCCTCTTCTCCGGTGATTGACTTCCGCTCTCTCCCTCCGCCTCCGCTGTTGACTCTGCCGGAGGTCGCCGAGTCTGAAGATGTCCCGACTGTTCCAGAGGTTGCCGTCGCGGCGGTTTCTCAGCCGAATCGGTGCAACGTCTGCCGGAAACGGGTCGGGTTGACCGGGTTCAAGTGCAAGTGCGGGACCACGTTCTGCGGGATCCACCGGTACCCGGAGAAGCACGCGTGCTCGTTCGATTTCAAGACGGTGGGCAAGGTGGAGATCGCCAGGAGCAACCCTCTGATCAAAGCAGAGAAGCTTGAGAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

172

Amino Acids

18.54

Weight (kDa)

8.25

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	14 - 37	1.3e-12	A20-like zinc finger
zf-AN1	PF01428	112 - 148	8.3e-10	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36320 AT3G52800 AT3G52800
fragaria_vesca	FvH4_4g02120 FvH4_6g18400
malus_domestica	MD12G1023200.v1.1 MD14G1020200.v1.1
prunus_persica	Prupe.7G113400_v2.0.a1 Prupe.7G113400_v2.0.a1
pyrus_communis	pycom12g02160 pycom14g01980
rosa_chinensis	RchiOBHm_Chr3g0472891
rosa_laevigata	RLG00000024047
rosa_roxburghii	Rroxscaffold_6G00408500
rosa_rugosa	Rorug03G0129200 Rorug03G0129300
rosa_samantha	Rh3AG181300 Rh3BG207500 Rh3CG204800 Rh3DG168300
rosa_wichuraiana	Rw3G016190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	411
AccBSI	CCGCTC	1 cut(s)	228
AccII	CGCG	2 cut(s)	311, 428
AclWI	GGATC	2 cut(s)	397, 410
AcoI	YGGCCR	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	2 cut(s)	352, 415
AflIII	ACRYGT	1 cut(s)	426
AgeI	ACCGGT	1 cut(s)	408
AgsI	TTSAA	2 cut(s)	373, 445
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	2 cut(s)	57, 502
AluI	AGCT	2 cut(s)	57, 502
Alw21I	GWGCWC	2 cut(s)	15, 434
Alw26I	GTCTC	3 cut(s)	47, 105, 187
AlwI	GGATC	2 cut(s)	397, 410
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	57, 72
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AsiGI	ACCGGT	1 cut(s)	408
Asp718I	GGTACC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	387
AsuC2I	CCSGG	3 cut(s)	77, 367, 416
AsuHPI	GGTGA	2 cut(s)	29, 226
AvaII	GGWCC	1 cut(s)	387
BamHI	GGATCC	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	411
Bbv12I	GWGCWC	2 cut(s)	15, 434
BbvI	GCAGC	2 cut(s)	44, 84
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	1 cut(s)	290
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BciT130I	CCWGG	1 cut(s)	472
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	3 cut(s)	77, 367, 416
BcoDI	GTCTC	3 cut(s)	47, 105, 187
BglI	GCCNNNNNGGC	1 cut(s)	311
BisI	GCNGC	3 cut(s)	58, 73, 312
BlsI	GCNGC	3 cut(s)	59, 74, 313
Bme1390I	CCNGG	4 cut(s)	77, 367, 416, 472
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	3 cut(s)	388, 404, 413
BmrFI	CCNGG	4 cut(s)	77, 367, 416, 472
BmsI	GCATC	1 cut(s)	8
BplI	GAGNNNNNCTC	2 cut(s)	466, 498
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	3 cut(s)	77, 367, 416
BsaWI	WCCGGW	2 cut(s)	211, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 415
Bse118I	RCCGGY	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	472
BseLI	CCNNNNNNNGG	2 cut(s)	352, 415
BseMII	CTCAG	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	44, 84
Bsh1236I	CGCG	2 cut(s)	311, 428
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	411
BshTI	ACCGGT	1 cut(s)	408
BsiHKAI	GWGCWC	2 cut(s)	15, 434
BsiSI	CCGG	7 cut(s)	77, 212, 260, 346, 366, 409, 416
BslFI	GGGAC	2 cut(s)	269, 400
BslI	CCNNNNNNNGG	2 cut(s)	352, 415
BsmAI	GTCTC	3 cut(s)	47, 105, 187
BsmBI	CGTCTC	1 cut(s)	47
BsmFI	GGGAC	2 cut(s)	269, 400
BsnI	GGCC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	15, 434
Bsp143I	GATC	3 cut(s)	402, 465, 486
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	2 cut(s)	311, 428
BspLI	GGNNCC	3 cut(s)	388, 404, 413
BspPI	GGATC	2 cut(s)	397, 410
BspQI	GCTCTTC	1 cut(s)	3
BspT107I	GGYRCC	1 cut(s)	411
BsrBI	CCGCTC	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	408
BssAI	RCCGGY	1 cut(s)	408
BssMI	GATC	3 cut(s)	402, 465, 486
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	4 cut(s)	41, 157, 292, 451
Bst6I	CTCTTC	2 cut(s)	3, 211
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	426, 430
BstDEI	CTNAG	1 cut(s)	321
BstEII	GGTNACC	1 cut(s)	35
BstFNI	CGCG	2 cut(s)	311, 428
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	3 cut(s)	405, 468, 489
BstMAI	GTCTC	3 cut(s)	47, 105, 187
BstMBI	GATC	3 cut(s)	402, 465, 486
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 311, 342
BstNI	CCWGG	1 cut(s)	472
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	4 cut(s)	75, 365, 414, 470
BstUI	CGCG	2 cut(s)	311, 428
BstV1I	GCAGC	2 cut(s)	44, 84
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	426, 430
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	408
Cfr13I	GGNCC	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	412
CspAI	ACCGGT	1 cut(s)	408
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	7 cut(s)	57, 75, 80, 140, 164, 325, 502
CviKI_1	RGCY	7 cut(s)	57, 75, 80, 140, 164, 325, 502
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	3 cut(s)	404, 467, 488
DpnII	GATC	3 cut(s)	402, 465, 486
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	3, 211
EarI	CTCTTC	2 cut(s)	3, 211
EciI	GGCGGA	3 cut(s)	20, 163, 228
Eco47I	GGWCC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	297
Eco91I	GGTNACC	1 cut(s)	35
EcoO65I	GGTNACC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	470
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	1 cut(s)	88
FaiI	YATR	1 cut(s)	86
FaqI	GGGAC	2 cut(s)	269, 400
FatI	CATG	1 cut(s)	84
FauI	CCCGC	2 cut(s)	377, 392
FbaI	TGATCA	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	58, 73, 312
Fsp4HI	GCNGC	3 cut(s)	58, 73, 312
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	3 cut(s)	58, 73, 312
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	7 cut(s)	77, 212, 260, 346, 366, 409, 416
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	2 cut(s)	252, 363
HindII	GTYRAC	2 cut(s)	252, 363
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	5 cut(s)	63, 88, 253, 272, 328
HpaII	CCGG	7 cut(s)	77, 212, 260, 346, 366, 409, 416
HphI	GGTGA	2 cut(s)	29, 226
Hpy166II	GTNNAC	2 cut(s)	252, 363
Hpy188I	TCNGA	2 cut(s)	277, 486
Hpy188III	TCNNGA	3 cut(s)	286, 296, 445
Hpy8I	GTNNAC	2 cut(s)	252, 363
Hpy99I	CGWCG	3 cut(s)	161, 202, 311
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	4 cut(s)	41, 157, 292, 451
HpyCH4IV	ACGT	2 cut(s)	339, 392
HpyCH4V	TGCA	2 cut(s)	336, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 311, 342
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	2 cut(s)	339, 392
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	48
KpnI	GGTACC	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	402, 465, 486
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	101, 127, 474
Lsp1109I	GCAGC	2 cut(s)	44, 84
LweI	GCATC	1 cut(s)	8
MaeII	ACGT	2 cut(s)	339, 392
MaeIII	GTNAC	2 cut(s)	35, 104
MalI	GATC	3 cut(s)	404, 467, 488
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	3 cut(s)	402, 465, 486
MboII	GAAGA	4 cut(s)	20, 58, 198, 290
MflI	RGATCY	1 cut(s)	402
MhlI	GDGCHC	2 cut(s)	15, 434
MluI	ACGCGT	1 cut(s)	426
MlyI	GAGTC	2 cut(s)	247, 281
MspA1I	CMGCKG	2 cut(s)	57, 247
MspI	CCGG	7 cut(s)	77, 212, 260, 346, 366, 409, 416
MspR9I	CCNGG	4 cut(s)	77, 367, 416, 472
MvaI	CCWGG	1 cut(s)	472
MvnI	CGCG	2 cut(s)	311, 428
MwoI	GCNNNNNNNGC	3 cut(s)	54, 311, 342
NciI	CCSGG	3 cut(s)	77, 367, 416
NdeII	GATC	3 cut(s)	402, 465, 486
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	3 cut(s)	388, 404, 413
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PfeI	GAWTC	3 cut(s)	63, 88, 328
PinAI	ACCGGT	1 cut(s)	408
PkrI	GCNGC	3 cut(s)	59, 74, 313
PleI	GAGTC	2 cut(s)	247, 280
PpsI	GAGTC	2 cut(s)	247, 280
Psp6I	CCWGG	1 cut(s)	470
PspEI	GGTNACC	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	3 cut(s)	388, 404, 413
PspPI	GGNCC	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	402
PvuII	CAGCTG	1 cut(s)	57
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	3
SatI	GCNGC	3 cut(s)	58, 73, 312
Sau3AI	GATC	3 cut(s)	402, 465, 486
Sau96I	GGNCC	1 cut(s)	387
SchI	GAGTC	2 cut(s)	247, 281
ScrFI	CCNGG	4 cut(s)	77, 367, 416, 472
SduI	GDGCHC	2 cut(s)	15, 434
SetI	ASST	8 cut(s)	37, 59, 267, 303, 342, 395, 462, 504
SfaNI	GCATC	1 cut(s)	8
SinI	GGWCC	1 cut(s)	387
SmlI	CTYRAG	2 cut(s)	122, 503
SmoI	CTYRAG	2 cut(s)	122, 503
StyD4I	CCNGG	4 cut(s)	75, 365, 414, 470
TaaI	ACNGT	4 cut(s)	41, 157, 292, 451
TaiI	ACGT	2 cut(s)	342, 395
TaqI	TCGA	2 cut(s)	159, 438
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	3 cut(s)	63, 88, 328
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	2 cut(s)	57, 72
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.