Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009919

Physical Location & Seq

Genomic Coordinates Forward (+)

1868153 .. 1868719

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCGGAAGAGCACAGATGCGAAGCCCCAGAAGGCCACCACCTCTGCGCAAACAACTGCGGCTTCTTCGGCAGCCCGGCCACCATGAACCTCTGCTCCAAATGCTACAGAGACTTCTGCATCAAGGAGCAGCAGGAGGCCTCGATTAAATCCACCGTCGAAGCCTCCCTCTCCGCCTCCGTCGCCGCTTCTTCCTCTCTCTCCGCTCCTCCTTGTTCTCCGCCTTCAACATCCTTCCCTTCTTTTCCGGCAGCGATCGAGACTCAATGTCAGACTCCGCCTCCGGCGTTGACTTTGCCGGAGGTAGTCGGAGATATTATCAAAGATCCCGTCGGAGATCTCCGGGCTCGTGAGGTGGCTGCGGTGGTGTCGCAGCCGAACCGGTGCACCGTTTGCAGGAAACGGGTCGGGTTAACCGGCTTCAAGTGCAGGTGCGGGACCACGTTCTGCGGCGTCCACAGGTACCCCGAGAAGCACGCGTGTTCGTTCGATTTCAAGACGCTCGGGAGAGAGGAGATCGCCAGGAGCAACCCCCTGGTCATAGCCGAGAAGCTCGAGAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

189

Amino Acids

20.28

Weight (kDa)

7.46

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	15 - 37	3.9e-13	A20-like zinc finger
zf-AN1	PF01428	129 - 165	6.6e-10	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36320 AT3G52800 AT3G52800
fragaria_vesca	FvH4_4g02120 FvH4_6g18400
malus_domestica	MD12G1023200.v1.1 MD14G1020200.v1.1
prunus_persica	Prupe.7G113400_v2.0.a1 Prupe.7G113400_v2.0.a1
pyrus_communis	pycom12g02160 pycom14g01980
rosa_chinensis	RchiOBHm_Chr3g0472891
rosa_laevigata	RLG00000024047
rosa_roxburghii	Rroxscaffold_6G00408500
rosa_rugosa	Rorug03G0129200 Rorug03G0129300
rosa_samantha	Rh3AG181300 Rh3BG207500 Rh3CG204800 Rh3DG168300
rosa_wichuraiana	Rw3G016190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	420
Acc16I	TGCGCA	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	420
Acc65I	GGTACC	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	462
AccBSI	CCGCTC	1 cut(s)	206
AccII	CGCG	1 cut(s)	479
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	396
AflIII	ACRYGT	1 cut(s)	477
AgeI	ACCGGT	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	228, 424, 496
AhdI	GACNNNNNGTC	1 cut(s)	267
AjnI	CCWGG	2 cut(s)	521, 534
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	1 cut(s)	553
AluI	AGCT	1 cut(s)	553
Alw21I	GWGCWC	2 cut(s)	15, 389
Alw26I	GTCTC	2 cut(s)	105, 254
Alw44I	GTGCAC	1 cut(s)	385
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	3 cut(s)	467, 503, 554
AoxI	GGCC	3 cut(s)	34, 78, 138
ApaLI	GTGCAC	1 cut(s)	385
ApeKI	GCWGC	5 cut(s)	72, 130, 251, 359, 373
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
AsiGI	ACCGGT	1 cut(s)	381
Asp718I	GGTACC	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	438
AsuC2I	CCSGG	2 cut(s)	77, 344
AvaI	CYCGRG	3 cut(s)	467, 503, 554
AvaII	GGWCC	1 cut(s)	438
BaeGI	GKGCMC	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	349
BauI	CACGAG	1 cut(s)	348
Bbv12I	GWGCWC	2 cut(s)	15, 389
BbvI	GCAGC	5 cut(s)	84, 142, 263, 346, 385
BciT130I	CCWGG	2 cut(s)	523, 536
BcnI	CCSGG	2 cut(s)	77, 344
BcoDI	GTCTC	2 cut(s)	105, 254
BfmI	CTRYAG	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	420
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	8 cut(s)	61, 73, 131, 186, 252, 360, 374, 451
BlsI	GCNGC	8 cut(s)	62, 74, 132, 187, 253, 361, 375, 452
Bme1390I	CCNGG	4 cut(s)	77, 344, 523, 536
Bme18I	GGWCC	1 cut(s)	438
BmeRI	GACNNNNNGTC	1 cut(s)	267
BmeT110I	CYCGRG	3 cut(s)	467, 503, 554
BmgT120I	GGNCC	1 cut(s)	438
BmiI	GGNNCC	2 cut(s)	439, 464
BmrFI	CCNGG	4 cut(s)	77, 344, 523, 536
BmsI	GCATC	2 cut(s)	8, 129
BpuMI	CCSGG	2 cut(s)	77, 344
BsaHI	GRCGYC	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	381
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 265, 295
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse118I	RCCGGY	2 cut(s)	381, 416
BseBI	CCWGG	2 cut(s)	523, 536
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	1 cut(s)	230
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseRI	GAGGAG	2 cut(s)	198, 527
BseSI	GKGCMC	1 cut(s)	389
BseXI	GCAGC	5 cut(s)	84, 142, 263, 346, 385
BsgI	GTGCAG	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	479
Bsh1285I	CGRYCG	1 cut(s)	258
BshFI	GGCC	3 cut(s)	36, 80, 140
BshNI	GGYRCC	1 cut(s)	462
BshTI	ACCGGT	1 cut(s)	381
BsiEI	CGRYCG	1 cut(s)	258
BsiHKAI	GWGCWC	2 cut(s)	15, 389
BsiHKCI	CYCGRG	3 cut(s)	467, 503, 554
BsiSI	CCGG	7 cut(s)	77, 248, 284, 299, 343, 382, 417
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	2 cut(s)	105, 254
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	3 cut(s)	36, 80, 140
BsoBI	CYCGRG	3 cut(s)	467, 503, 554
Bsp1286I	GDGCHC	3 cut(s)	15, 349, 389
Bsp143I	GATC	4 cut(s)	255, 325, 337, 516
BspANI	GGCC	3 cut(s)	36, 80, 140
BspFNI	CGCG	1 cut(s)	479
BspLI	GGNNCC	2 cut(s)	439, 464
BspMI	ACCTGC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	320
BspQI	GCTCTTC	1 cut(s)	3
BspT107I	GGYRCC	1 cut(s)	462
BsrBI	CCGCTC	1 cut(s)	206
BsrFI	RCCGGY	2 cut(s)	381, 416
BssAI	RCCGGY	2 cut(s)	381, 416
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	4 cut(s)	255, 325, 337, 516
BssNI	GRCGYC	1 cut(s)	453
BssSI	CACGAG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	348
Bst2UI	CCWGG	2 cut(s)	523, 536
Bst4CI	ACNGT	2 cut(s)	157, 391
Bst6I	CTCTTC	1 cut(s)	3
BstACI	GRCGYC	1 cut(s)	453
BstAPI	GCANNNNNTGC	1 cut(s)	393
BstC8I	GCNNGC	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	230
BstFNI	CGCG	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	4 cut(s)	258, 328, 340, 519
BstMAI	GTCTC	2 cut(s)	105, 254
BstMBI	GATC	4 cut(s)	255, 325, 337, 516
BstMCI	CGRYCG	1 cut(s)	258
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 102, 182, 393, 426
BstNI	CCWGG	2 cut(s)	523, 536
BstSCI	CCNGG	4 cut(s)	75, 342, 521, 534
BstSFI	CTRYAG	1 cut(s)	106
BstSLI	GKGCMC	1 cut(s)	389
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	5 cut(s)	84, 142, 263, 346, 385
BstX2I	RGATCY	2 cut(s)	325, 337
BstYI	RGATCY	2 cut(s)	325, 337
BsuRI	GGCC	3 cut(s)	36, 80, 140
BtsCI	GGATG	1 cut(s)	230
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	477
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	2 cut(s)	381, 416
Cfr13I	GGNCC	1 cut(s)	438
CseI	GACGC	2 cut(s)	442, 508
Csp6I	GTAC	1 cut(s)	463
CspAI	ACCGGT	1 cut(s)	381
CviAII	CATG	1 cut(s)	85
CviQI	GTAC	1 cut(s)	463
DpnI	GATC	4 cut(s)	257, 327, 339, 518
DpnII	GATC	4 cut(s)	255, 325, 337, 516
DriI	GACNNNNNGTC	1 cut(s)	267
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	3
EciI	GGCGGA	4 cut(s)	20, 163, 210, 267
Eco147I	AGGCCT	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	438
Eco88I	CYCGRG	3 cut(s)	467, 503, 554
EcoRII	CCWGG	2 cut(s)	521, 534
EcoT38I	GRGCYC	1 cut(s)	349
FaeI	CATG	1 cut(s)	88
FaiI	YATR	2 cut(s)	86, 542
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	428
Fnu4HI	GCNGC	8 cut(s)	61, 73, 131, 186, 252, 360, 374, 451
FokI	GGATG	1 cut(s)	217
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	8 cut(s)	61, 73, 131, 186, 252, 360, 374, 451
FspI	TGCGCA	1 cut(s)	49
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	8 cut(s)	61, 73, 131, 186, 252, 360, 374, 451
HaeIII	GGCC	3 cut(s)	36, 80, 140
HapII	CCGG	7 cut(s)	77, 248, 284, 299, 343, 382, 417
HgaI	GACGC	2 cut(s)	442, 508
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	2 cut(s)	291, 414
HindII	GTYRAC	2 cut(s)	291, 414
HinfI	GANTC	2 cut(s)	262, 274
HpaI	GTTAAC	1 cut(s)	414
HpaII	CCGG	7 cut(s)	77, 248, 284, 299, 343, 382, 417
Hpy166II	GTNNAC	4 cut(s)	291, 387, 414, 457
Hpy188I	TCNGA	3 cut(s)	273, 311, 335
Hpy188III	TCNNGA	5 cut(s)	259, 350, 496, 505, 556
Hpy8I	GTNNAC	4 cut(s)	291, 387, 414, 457
Hpy99I	CGWCG	3 cut(s)	161, 185, 335
HpyAV	CCTTC	4 cut(s)	26, 234, 244, 249
HpyCH4III	ACNGT	2 cut(s)	157, 391
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	4 cut(s)	120, 387, 396, 429
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 102, 182, 393, 426
HpySE526I	ACGT	1 cut(s)	443
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	48
KpnI	GGTACC	1 cut(s)	466
KspAI	GTTAAC	1 cut(s)	414
Kzo9I	GATC	4 cut(s)	255, 325, 337, 516
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	4 cut(s)	101, 127, 211, 525
Lsp1109I	GCAGC	5 cut(s)	84, 142, 263, 346, 385
LweI	GCATC	2 cut(s)	8, 129
MaeII	ACGT	1 cut(s)	443
MalI	GATC	4 cut(s)	257, 327, 339, 518
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	4 cut(s)	255, 325, 337, 516
MboII	GAAGA	3 cut(s)	20, 58, 183
MflI	RGATCY	2 cut(s)	325, 337
MhlI	GDGCHC	3 cut(s)	15, 349, 389
MluI	ACGCGT	1 cut(s)	477
MlyI	GAGTC	2 cut(s)	256, 268
MmeI	TCCRAC	2 cut(s)	289, 313
MseI	TTAA	2 cut(s)	147, 413
MspI	CCGG	7 cut(s)	77, 248, 284, 299, 343, 382, 417
MspR9I	CCNGG	4 cut(s)	77, 344, 523, 536
MvaI	CCWGG	2 cut(s)	523, 536
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	5 cut(s)	69, 102, 182, 393, 426
NciI	CCSGG	2 cut(s)	77, 344
NdeII	GATC	4 cut(s)	255, 325, 337, 516
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	2 cut(s)	439, 464
NsbI	TGCGCA	1 cut(s)	49
PaeR7I	CTCGAG	1 cut(s)	554
PaqCI	CACCTGC	1 cut(s)	420
PceI	AGGCCT	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	3
PinAI	ACCGGT	1 cut(s)	381
PkrI	GCNGC	8 cut(s)	62, 74, 132, 187, 253, 361, 375, 452
Ple19I	CGATCG	1 cut(s)	258
PleI	GAGTC	2 cut(s)	256, 268
PpsI	GAGTC	2 cut(s)	256, 268
Psp6I	CCWGG	2 cut(s)	521, 534
PspGI	CCWGG	2 cut(s)	521, 534
PspN4I	GGNNCC	2 cut(s)	439, 464
PspPI	GGNCC	1 cut(s)	438
PsuI	RGATCY	2 cut(s)	325, 337
PvuI	CGATCG	1 cut(s)	258
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	2 cut(s)	147, 413
SatI	GCNGC	8 cut(s)	61, 73, 131, 186, 252, 360, 374, 451
Sau3AI	GATC	4 cut(s)	255, 325, 337, 516
Sau96I	GGNCC	1 cut(s)	438
SchI	GAGTC	2 cut(s)	256, 268
ScrFI	CCNGG	4 cut(s)	77, 344, 523, 536
SduI	GDGCHC	3 cut(s)	15, 349, 389
SetI	ASST	8 cut(s)	45, 93, 306, 357, 434, 446, 464, 555
SfaNI	GCATC	2 cut(s)	8, 129
SfcI	CTRYAG	1 cut(s)	106
Sfr274I	CTCGAG	1 cut(s)	554
SinI	GGWCC	1 cut(s)	438
SlaI	CTCGAG	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
SseBI	AGGCCT	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	4 cut(s)	75, 342, 521, 534
TaaI	ACNGT	2 cut(s)	157, 391
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	5 cut(s)	143, 159, 258, 489, 555
TauI	GCSGC	3 cut(s)	63, 188, 453
Tru1I	TTAA	2 cut(s)	147, 413
Tru9I	TTAA	2 cut(s)	147, 413
TseI	GCWGC	5 cut(s)	72, 130, 251, 359, 373
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	169
VneI	GTGCAC	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	438
XhoI	CTCGAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.