Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009919

Physical Location & Seq

Genomic Coordinates Reverse (-)

31210692 .. 31212246

Gene Structure 1555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGTAAGGATCTCTGCATCAAAGCCGACAAAAACATCATCAATGGTGATCGCATAGTCGCCATCGTCTGGAATATTCTCGCTTTAACTCCTCCCCCCCCCTTCCTCCTCCCCCTTATTCTTATCCCATTCCCTTCTCCCCGTACTTTCTCCAATTATCTCAAACCCCCTCAGATCAGGTTTTCGCAGATCGATCTAGGCGATCTAATATTCGTTGGGATTTCTGGTTCGAATTTTGAAGAGATCTTGAAGCAGAGCAGAGAGTTGAGATGGCGGAAGAACACAGATGCCAAGCACCAGAAGGTCACCGTCTCTGCGCTAACAACTGCGGATTCTTCGGCAGCCCGGCCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.16

Weight (kDa)

9.73

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36320 AT3G52800 AT3G52800
fragaria_vesca	FvH4_4g02120 FvH4_6g18400
malus_domestica	MD12G1023200.v1.1 MD14G1020200.v1.1
prunus_persica	Prupe.7G113400_v2.0.a1 Prupe.7G113400_v2.0.a1
pyrus_communis	pycom12g02160 pycom14g01980
rosa_chinensis	RchiOBHm_Chr3g0472891
rosa_laevigata	RLG00000024047
rosa_roxburghii	Rroxscaffold_6G00408500
rosa_rugosa	Rorug03G0129200 Rorug03G0129300
rosa_samantha	Rh3AG181300 Rh3BG207500 Rh3CG204800 Rh3DG168300
rosa_wichuraiana	Rw3G016190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	69
AciI	CCGC	2 cut(s)	274, 329
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	232
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	2 cut(s)	239, 250
AloI	GAACNNNNNNTCC	2 cut(s)	211, 243
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	319
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	59, 298
AsuII	TTCGAA	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	2 cut(s)	71, 264
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	1 cut(s)	197
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	2 cut(s)	27, 277
Bpu14I	TTCGAA	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	346
Bsa29I	ATCGAT	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
BseCI	ATCGAT	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	185
BseRI	GAGGAG	2 cut(s)	81, 98
BseXI	GCAGC	1 cut(s)	353
BshFI	GGCC	1 cut(s)	349
BshVI	ATCGAT	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	316
BsmBI	CGTCTC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	349
Bsp119I	TTCGAA	1 cut(s)	230
Bsp143I	GATC	7 cut(s)	10, 49, 174, 189, 193, 202, 243
BspACI	CCGC	2 cut(s)	274, 329
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	1 cut(s)	184
BspDI	ATCGAT	1 cut(s)	192
BspPI	GGATC	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	230
BssMI	GATC	7 cut(s)	10, 49, 174, 189, 193, 202, 243
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	171
BstEII	GGTNACC	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	7 cut(s)	13, 52, 177, 192, 196, 205, 246
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	7 cut(s)	10, 49, 174, 189, 193, 202, 243
BstPI	GGTNACC	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	353
BstX2I	RGATCY	2 cut(s)	10, 243
BstYI	RGATCY	2 cut(s)	10, 243
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	349
BsuTUI	ATCGAT	1 cut(s)	192
CfoI	GCGC	1 cut(s)	319
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	1 cut(s)	354
CviJI	RGCY	3 cut(s)	26, 344, 349
CviKI_1	RGCY	3 cut(s)	26, 344, 349
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	7 cut(s)	12, 51, 176, 191, 195, 204, 245
DpnII	GATC	7 cut(s)	10, 49, 174, 189, 193, 202, 243
EaeI	YGGCCR	1 cut(s)	347
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
EciI	GGCGGA	1 cut(s)	289
Eco91I	GGTNACC	1 cut(s)	304
EcoO65I	GGTNACC	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	1 cut(s)	357
FaiI	YATR	2 cut(s)	56, 355
FatI	CATG	1 cut(s)	353
Fnu4HI	GCNGC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	349
HapII	CCGG	1 cut(s)	346
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	357
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	2 cut(s)	59, 298
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	2 cut(s)	70, 247
HpyAV	CCTTC	3 cut(s)	112, 144, 295
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	357
HspAI	GCGC	1 cut(s)	317
Kzo9I	GATC	7 cut(s)	10, 49, 174, 189, 193, 202, 243
LpnPI	CCDG	4 cut(s)	55, 163, 210, 311
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	2 cut(s)	27, 277
MaeI	CTAG	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	7 cut(s)	12, 51, 176, 191, 195, 204, 245
MboI	GATC	7 cut(s)	10, 49, 174, 189, 193, 202, 243
MboII	GAAGA	3 cut(s)	251, 289, 327
MflI	RGATCY	2 cut(s)	10, 243
MluCI	AATT	2 cut(s)	154, 232
MnlI	CCTC	4 cut(s)	102, 116, 119, 180
MseI	TTAA	1 cut(s)	86
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	1 cut(s)	346
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	7 cut(s)	10, 49, 174, 189, 193, 202, 243
NlaIII	CATG	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	332
PflMI	CCANNNNNTGG	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	343
PspEI	GGTNACC	1 cut(s)	304
PsuI	RGATCY	2 cut(s)	10, 243
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	7 cut(s)	10, 49, 174, 189, 193, 202, 243
ScrFI	CCNGG	1 cut(s)	346
SetI	ASST	2 cut(s)	182, 306
SfaNI	GCATC	2 cut(s)	27, 277
SfuI	TTCGAA	1 cut(s)	230
SgeI	CNNG	9 cut(s)	82, 92, 153, 190, 209, 237, 259, 304, 310
Sse9I	AATT	2 cut(s)	154, 232
SsiI	CCGC	2 cut(s)	274, 329
SspI	AATATT	2 cut(s)	76, 210
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	344
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	2 cut(s)	192, 230
TasI	AATT	2 cut(s)	154, 232
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	69
XapI	RAATTY	1 cut(s)	232
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.