Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009919

Physical Location & Seq

Genomic Coordinates Forward (+)

2331277 .. 2333033

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1023200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGGAAGAGCACAGATGCGAAGCCCCAGAAGGCCACCACCTCTGCGCAAACAACTGCGGGTTCTTCGGCAGCCCGGCCACCATGAACCTCTGCTCCAAATGCTACAGAGATTTCTGCCTCAAGGAGCAGCAGGAGGCCTCGATTAAATCCACCGTCGAAGCCTCCCTCTCCGCCTCCGCCGCCTCCGCCGCCGCCGCTTCTCCTCCTTGTTCTCCGCCTTCAACATCCTTGCCTTCTTCTGCGGCAGCGATCGAGACTCAATGTCAGCCTCCGCCTCCGGCGTTGACTTTGCCGGAGGTAGTCGGAGATATAATCAAAGATCCCGCCGGAGATCTCCGGGCTCGTGAGGTGGCTGAGGTGGTGTCGCAGCCAAACCGGTGCACCGTTTGCAGGAAACGGGTCGGGTTAACCGGCTTCAAGTGCAGGTGCGGGACCACGTTCTGCGGCGTCCACAGGTACCCCGAGAAGCACGCGTGTTCGTTCGATTTCAAGACGCTCGGGAGGGAGGAGATCGCCAGGAGCAACCCCCTGGTCATAGCCGAGAAGCTCGAGAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

188

Amino Acids

20.01

Weight (kDa)

6.92

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	15 - 37	3.9e-13	A20-like zinc finger
zf-AN1	PF01428	128 - 164	6.5e-10	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36320 AT3G52800 AT3G52800
fragaria_vesca	FvH4_4g02120 FvH4_6g18400
malus_domestica	MD12G1023200.v1.1 MD14G1020200.v1.1
prunus_persica	Prupe.7G113400_v2.0.a1 Prupe.7G113400_v2.0.a1
pyrus_communis	pycom12g02160 pycom14g01980
rosa_chinensis	RchiOBHm_Chr3g0472891
rosa_laevigata	RLG00000024047
rosa_roxburghii	Rroxscaffold_6G00408500
rosa_rugosa	Rorug03G0129200 Rorug03G0129300
rosa_samantha	Rh3AG181300 Rh3BG207500 Rh3CG204800 Rh3DG168300
rosa_wichuraiana	Rw3G016190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	417
Acc16I	TGCGCA	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	417
Acc65I	GGTACC	1 cut(s)	459
AccB1I	GGYRCC	1 cut(s)	459
AccII	CGCG	1 cut(s)	476
AclWI	GGATC	1 cut(s)	317
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	450
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	1 cut(s)	393
AflIII	ACRYGT	1 cut(s)	474
AgeI	ACCGGT	1 cut(s)	378
AgsI	TTSAA	3 cut(s)	225, 421, 493
AhdI	GACNNNNNGTC	1 cut(s)	264
AjnI	CCWGG	2 cut(s)	518, 531
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	1 cut(s)	550
AluI	AGCT	1 cut(s)	550
Alw21I	GWGCWC	2 cut(s)	15, 386
Alw26I	GTCTC	1 cut(s)	251
Alw44I	GTGCAC	1 cut(s)	382
AlwI	GGATC	1 cut(s)	317
Ama87I	CYCGRG	3 cut(s)	464, 500, 551
AoxI	GGCC	3 cut(s)	34, 78, 138
ApaLI	GTGCAC	1 cut(s)	382
ApeKI	GCWGC	4 cut(s)	72, 130, 248, 370
AsiGI	ACCGGT	1 cut(s)	378
Asp718I	GGTACC	1 cut(s)	459
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	435
AsuC2I	CCSGG	2 cut(s)	77, 341
AvaI	CYCGRG	3 cut(s)	464, 500, 551
AvaII	GGWCC	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	346
BauI	CACGAG	1 cut(s)	345
Bbv12I	GWGCWC	2 cut(s)	15, 386
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	4 cut(s)	84, 142, 260, 382
BciT130I	CCWGG	2 cut(s)	520, 533
BcnI	CCSGG	2 cut(s)	77, 341
BcoDI	GTCTC	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	417
BglII	AGATCT	1 cut(s)	334
Bme1390I	CCNGG	4 cut(s)	77, 341, 520, 533
Bme18I	GGWCC	1 cut(s)	435
BmeRI	GACNNNNNGTC	1 cut(s)	264
BmeT110I	CYCGRG	3 cut(s)	464, 500, 551
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	2 cut(s)	436, 461
BmrFI	CCNGG	4 cut(s)	77, 341, 520, 533
BmsI	GCATC	1 cut(s)	8
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	2 cut(s)	77, 341
BsaHI	GRCGYC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	531
BsaWI	WCCGGW	1 cut(s)	378
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse118I	RCCGGY	2 cut(s)	378, 413
BseBI	CCWGG	2 cut(s)	520, 533
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	2 cut(s)	195, 524
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	4 cut(s)	84, 142, 260, 382
BsgI	GTGCAG	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	476
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	3 cut(s)	36, 80, 140
BshNI	GGYRCC	1 cut(s)	459
BshTI	ACCGGT	1 cut(s)	378
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	2 cut(s)	15, 386
BsiHKCI	CYCGRG	3 cut(s)	464, 500, 551
BsiSI	CCGG	7 cut(s)	77, 281, 296, 330, 340, 379, 414
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	36, 80, 140
BsoBI	CYCGRG	3 cut(s)	464, 500, 551
Bsp1286I	GDGCHC	3 cut(s)	15, 346, 386
Bsp143I	GATC	4 cut(s)	252, 322, 334, 513
BspANI	GGCC	3 cut(s)	36, 80, 140
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	476
BspLI	GGNNCC	2 cut(s)	436, 461
BspMI	ACCTGC	1 cut(s)	417
BspPI	GGATC	1 cut(s)	317
BspQI	GCTCTTC	1 cut(s)	3
BspT107I	GGYRCC	1 cut(s)	459
BsrFI	RCCGGY	2 cut(s)	378, 413
BssAI	RCCGGY	2 cut(s)	378, 413
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	4 cut(s)	252, 322, 334, 513
BssNI	GRCGYC	1 cut(s)	450
BssSI	CACGAG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	520, 533
Bst4CI	ACNGT	2 cut(s)	157, 388
Bst6I	CTCTTC	1 cut(s)	3
BstACI	GRCGYC	1 cut(s)	450
BstAPI	GCANNNNNTGC	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	227
BstFNI	CGCG	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	4 cut(s)	255, 325, 337, 516
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	4 cut(s)	252, 322, 334, 513
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	7 cut(s)	102, 182, 188, 191, 197, 390, 423
BstNI	CCWGG	2 cut(s)	520, 533
BstSCI	CCNGG	4 cut(s)	75, 339, 518, 531
BstSFI	CTRYAG	1 cut(s)	106
BstSLI	GKGCMC	1 cut(s)	386
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	4 cut(s)	84, 142, 260, 382
BstX2I	RGATCY	2 cut(s)	322, 334
BstYI	RGATCY	2 cut(s)	322, 334
BsuRI	GGCC	3 cut(s)	36, 80, 140
BtsCI	GGATG	1 cut(s)	227
BveI	ACCTGC	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	474
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	2 cut(s)	378, 413
Cfr13I	GGNCC	1 cut(s)	435
CseI	GACGC	2 cut(s)	439, 505
Csp6I	GTAC	1 cut(s)	460
CspAI	ACCGGT	1 cut(s)	378
CviAII	CATG	1 cut(s)	85
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	4 cut(s)	254, 324, 336, 515
DpnII	GATC	4 cut(s)	252, 322, 334, 513
DriI	GACNNNNNGTC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	3
EciI	GGCGGA	6 cut(s)	20, 163, 169, 178, 207, 264
Eco147I	AGGCCT	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	435
Eco88I	CYCGRG	3 cut(s)	464, 500, 551
EcoRII	CCWGG	2 cut(s)	518, 531
EcoT38I	GRGCYC	1 cut(s)	346
FaeI	CATG	1 cut(s)	88
FaiI	YATR	3 cut(s)	86, 314, 539
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	1 cut(s)	84
FauI	CCCGC	3 cut(s)	53, 334, 425
FokI	GGATG	1 cut(s)	214
FriOI	GRGCYC	1 cut(s)	346
FspI	TGCGCA	1 cut(s)	49
GlaI	GCGC	1 cut(s)	49
HaeIII	GGCC	3 cut(s)	36, 80, 140
HapII	CCGG	7 cut(s)	77, 281, 296, 330, 340, 379, 414
HgaI	GACGC	2 cut(s)	439, 505
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	2 cut(s)	288, 411
HindII	GTYRAC	2 cut(s)	288, 411
HinfI	GANTC	1 cut(s)	259
HpaI	GTTAAC	1 cut(s)	411
HpaII	CCGG	7 cut(s)	77, 281, 296, 330, 340, 379, 414
Hpy166II	GTNNAC	4 cut(s)	288, 384, 411, 454
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	5 cut(s)	256, 347, 493, 502, 553
Hpy8I	GTNNAC	4 cut(s)	288, 384, 411, 454
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	3 cut(s)	26, 231, 246
HpyCH4III	ACNGT	2 cut(s)	157, 388
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	3 cut(s)	384, 393, 426
HpyF10VI	GCNNNNNNNGC	7 cut(s)	102, 182, 188, 191, 197, 390, 423
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	440
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	48
KpnI	GGTACC	1 cut(s)	463
KspAI	GTTAAC	1 cut(s)	411
Kzo9I	GATC	4 cut(s)	252, 322, 334, 513
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	101, 127, 522
Lsp1109I	GCAGC	4 cut(s)	84, 142, 260, 382
LweI	GCATC	1 cut(s)	8
MaeII	ACGT	1 cut(s)	440
MalI	GATC	4 cut(s)	254, 324, 336, 515
MboI	GATC	4 cut(s)	252, 322, 334, 513
MboII	GAAGA	3 cut(s)	20, 58, 231
MflI	RGATCY	2 cut(s)	322, 334
MhlI	GDGCHC	3 cut(s)	15, 346, 386
MluI	ACGCGT	1 cut(s)	474
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	286
MseI	TTAA	2 cut(s)	147, 410
MspI	CCGG	7 cut(s)	77, 281, 296, 330, 340, 379, 414
MspR9I	CCNGG	4 cut(s)	77, 341, 520, 533
MvaI	CCWGG	2 cut(s)	520, 533
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	7 cut(s)	102, 182, 188, 191, 197, 390, 423
NciI	CCSGG	2 cut(s)	77, 341
NdeII	GATC	4 cut(s)	252, 322, 334, 513
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	2 cut(s)	436, 461
NsbI	TGCGCA	1 cut(s)	49
PaeR7I	CTCGAG	1 cut(s)	551
PaqCI	CACCTGC	1 cut(s)	417
PceI	AGGCCT	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	3
PinAI	ACCGGT	1 cut(s)	378
Ple19I	CGATCG	1 cut(s)	255
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Psp6I	CCWGG	2 cut(s)	518, 531
PspGI	CCWGG	2 cut(s)	518, 531
PspN4I	GGNNCC	2 cut(s)	436, 461
PspPI	GGNCC	1 cut(s)	435
PsuI	RGATCY	2 cut(s)	322, 334
PvuI	CGATCG	1 cut(s)	255
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	2 cut(s)	147, 410
Sau3AI	GATC	4 cut(s)	252, 322, 334, 513
Sau96I	GGNCC	1 cut(s)	435
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	4 cut(s)	77, 341, 520, 533
SduI	GDGCHC	3 cut(s)	15, 346, 386
SetI	ASST	9 cut(s)	45, 93, 303, 354, 363, 431, 443, 461, 552
SfaNI	GCATC	1 cut(s)	8
SfcI	CTRYAG	1 cut(s)	106
Sfr274I	CTCGAG	1 cut(s)	551
SinI	GGWCC	1 cut(s)	435
SlaI	CTCGAG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	122, 551
SmoI	CTYRAG	2 cut(s)	122, 551
SseBI	AGGCCT	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	4 cut(s)	75, 339, 518, 531
TaaI	ACNGT	2 cut(s)	157, 388
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	5 cut(s)	143, 159, 255, 486, 552
TauI	GCSGC	6 cut(s)	185, 194, 197, 200, 248, 450
Tru1I	TTAA	2 cut(s)	147, 410
Tru9I	TTAA	2 cut(s)	147, 410
TseI	GCWGC	4 cut(s)	72, 130, 248, 370
TspDTI	ATGAA	1 cut(s)	101
VneI	GTGCAC	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	435
XhoI	CTCGAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.