Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009919

Physical Location & Seq

Genomic Coordinates Forward (+)

19569256 .. 19570710

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCGGAAGAGCATCGATGTCAGACACCAGAAAGCAACCGTCTCTGTGTTAACAACTGTGGCTTCCTCGGCAGCTCCGCCACCATGAATCTCTGTTCTAATTGTTACGGCGATCTTTGTCTCAAACAACAACAACAATCCTCCTCCATCAAATCCACCGTTGAATCTTCCCTCTCTGTATCTCCTCCGTCGTCATCATCATCGGAGATCTCTTCTCCGATCATCCCTCCTCTCCTTAAAAATCCATCAGTCAAGCTAGAGGTACCGGAGAAAAAGGCGGTGATTTCGCTGCCGACGACGGAGCAGAATCAGCAACAGAGGCCGAATCGGTGCACGACGTGTAGGAAACGGGTCGGGTTAACCGGATTCAAGTGCCGGTGCGGTACGATGTTTTGCGGGGTTCATAGGTACCCGGAGATCCATGGATGCAGCTACGATTTCAAATCGGCCGGACGTGAAGAGATCGCGAAAGCGAATCCGTTGGTGAAAGCAGCGAAGCTTCAGAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010033 GO:0010200 GO:0010243 GO:0042221 GO:0042493 GO:0050896 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

170

Amino Acids

18.6

Weight (kDa)

9.05

Isoelectric Point (pI)

58.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	14 - 36	5.4e-10	A20-like zinc finger
zf-AN1	PF01428	111 - 147	8.5e-10	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36320 AT3G52800 AT3G52800
fragaria_vesca	FvH4_4g02120 FvH4_6g18400
malus_domestica	MD12G1023200.v1.1 MD14G1020200.v1.1
prunus_persica	Prupe.7G113400_v2.0.a1 Prupe.7G113400_v2.0.a1
pyrus_communis	pycom12g02160 pycom14g01980
rosa_chinensis	RchiOBHm_Chr3g0472891
rosa_laevigata	RLG00000024047
rosa_roxburghii	Rroxscaffold_6G00408500
rosa_rugosa	Rorug03G0129200 Rorug03G0129300
rosa_samantha	Rh3AG181300 Rh3BG207500 Rh3CG204800 Rh3DG168300
rosa_wichuraiana	Rw3G016190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	262, 408
AccB1I	GGYRCC	2 cut(s)	262, 408
AccII	CGCG	1 cut(s)	467
AciI	CCGC	5 cut(s)	5, 78, 278, 381, 396
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	485
AdeI	CACNNNGTG	1 cut(s)	339
AfaI	GTAC	3 cut(s)	264, 385, 410
AflIII	ACRYGT	1 cut(s)	338
AgsI	TTSAA	3 cut(s)	164, 370, 442
AjiI	CACGTC	2 cut(s)	339, 455
AluBI	AGCT	4 cut(s)	75, 256, 432, 499
AluI	AGCT	4 cut(s)	75, 256, 432, 499
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	2 cut(s)	47, 125
Alw44I	GTGCAC	1 cut(s)	331
AlwI	GGATC	1 cut(s)	412
AoxI	GGCC	2 cut(s)	320, 447
ApaLI	GTGCAC	1 cut(s)	331
ApeKI	GCWGC	4 cut(s)	72, 289, 429, 491
Asp718I	GGTACC	2 cut(s)	262, 408
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	292, 496
BaeGI	GKGCMC	1 cut(s)	335
BanI	GGYRCC	2 cut(s)	262, 408
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	4 cut(s)	84, 276, 441, 503
BccI	CCATC	2 cut(s)	155, 253
BceAI	ACGGC	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	413
BcoDI	GTCTC	2 cut(s)	47, 125
BfaI	CTAG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	4 cut(s)	73, 290, 430, 492
BlsI	GCNGC	4 cut(s)	74, 291, 431, 493
Bme1390I	CCNGG	1 cut(s)	413
BmgBI	CACGTC	2 cut(s)	339, 455
BmiI	GGNNCC	2 cut(s)	264, 410
BmrFI	CCNGG	1 cut(s)	413
BmsI	GCATC	2 cut(s)	22, 416
BpuMI	CCSGG	1 cut(s)	413
Bsa29I	ATCGAT	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	67, 421
BsaWI	WCCGGW	2 cut(s)	265, 362
Bse118I	RCCGGY	1 cut(s)	375
BseCI	ATCGAT	1 cut(s)	16
BseDI	CCNNGG	2 cut(s)	67, 421
BseGI	GGATG	2 cut(s)	222, 431
BseRI	GAGGAG	3 cut(s)	133, 174, 219
BseSI	GKGCMC	1 cut(s)	335
BseX3I	CGGCCG	1 cut(s)	447
BseXI	GCAGC	4 cut(s)	84, 276, 441, 503
Bsh1236I	CGCG	1 cut(s)	467
Bsh1285I	CGRYCG	1 cut(s)	450
BshFI	GGCC	2 cut(s)	322, 449
BshNI	GGYRCC	2 cut(s)	262, 408
BshVI	ATCGAT	1 cut(s)	16
BsiEI	CGRYCG	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	5 cut(s)	266, 363, 376, 413, 450
BsmAI	GTCTC	2 cut(s)	47, 125
BsmBI	CGTCTC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	322, 449
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	5 cut(s)	112, 207, 219, 417, 462
Bsp19I	CCATGG	1 cut(s)	421
Bsp68I	TCGCGA	1 cut(s)	467
BspACI	CCGC	5 cut(s)	5, 78, 278, 381, 396
BspANI	GGCC	2 cut(s)	322, 449
BspDI	ATCGAT	1 cut(s)	16
BspFNI	CGCG	1 cut(s)	467
BspLI	GGNNCC	2 cut(s)	264, 410
BspPI	GGATC	1 cut(s)	412
BspQI	GCTCTTC	1 cut(s)	3
BspT107I	GGYRCC	2 cut(s)	262, 408
BsrFI	RCCGGY	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	2 cut(s)	67, 421
BssMI	GATC	5 cut(s)	112, 207, 219, 417, 462
BssT1I	CCWWGG	1 cut(s)	421
Bst4CI	ACNGT	3 cut(s)	41, 59, 160
Bst6I	CTCTTC	3 cut(s)	3, 217, 453
BstDSI	CCRYGG	1 cut(s)	421
BstF5I	GGATG	2 cut(s)	222, 431
BstFNI	CGCG	1 cut(s)	467
BstKTI	GATC	5 cut(s)	115, 210, 222, 420, 465
BstMAI	GTCTC	2 cut(s)	47, 125
BstMBI	GATC	5 cut(s)	112, 207, 219, 417, 462
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 310, 319
BstSCI	CCNGG	1 cut(s)	411
BstSLI	GKGCMC	1 cut(s)	335
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	4 cut(s)	84, 276, 441, 503
BstX2I	RGATCY	2 cut(s)	207, 417
BstYI	RGATCY	2 cut(s)	207, 417
BstZI	CGGCCG	1 cut(s)	447
Bsu15I	ATCGAT	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	322, 449
BsuTUI	ATCGAT	1 cut(s)	16
BtgI	CCRYGG	1 cut(s)	421
BtrI	CACGTC	2 cut(s)	339, 455
BtsCI	GGATG	2 cut(s)	222, 431
BtuMI	TCGCGA	1 cut(s)	467
Cfr10I	RCCGGY	1 cut(s)	375
ClaI	ATCGAT	1 cut(s)	16
Csp6I	GTAC	3 cut(s)	263, 384, 409
CviAII	CATG	2 cut(s)	85, 422
CviJI	RGCY	7 cut(s)	63, 75, 256, 322, 432, 449, 499
CviKI_1	RGCY	7 cut(s)	63, 75, 256, 322, 432, 449, 499
CviQI	GTAC	3 cut(s)	263, 384, 409
DpnI	GATC	5 cut(s)	114, 209, 221, 419, 464
DpnII	GATC	5 cut(s)	112, 207, 219, 417, 462
DraIII	CACNNNGTG	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	447
EagI	CGGCCG	1 cut(s)	447
Eam1104I	CTCTTC	3 cut(s)	3, 217, 453
EarI	CTCTTC	3 cut(s)	3, 217, 453
EciI	GGCGGA	2 cut(s)	20, 67
EclXI	CGGCCG	1 cut(s)	447
Eco130I	CCWWGG	1 cut(s)	421
Eco52I	CGGCCG	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	485
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	2 cut(s)	88, 425
FaiI	YATR	4 cut(s)	86, 405, 423, 511
FatI	CATG	2 cut(s)	84, 421
FauI	CCCGC	1 cut(s)	389
Fnu4HI	GCNGC	4 cut(s)	73, 290, 430, 492
FokI	GGATG	2 cut(s)	209, 438
Fsp4HI	GCNGC	4 cut(s)	73, 290, 430, 492
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	4 cut(s)	73, 290, 430, 492
HaeIII	GGCC	2 cut(s)	322, 449
HapII	CCGG	5 cut(s)	266, 363, 376, 413, 450
Hin1II	CATG	2 cut(s)	88, 425
HincII	GTYRAC	2 cut(s)	52, 360
HindII	GTYRAC	2 cut(s)	52, 360
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	6 cut(s)	88, 164, 307, 325, 366, 475
HpaI	GTTAAC	2 cut(s)	52, 360
HpaII	CCGG	5 cut(s)	266, 363, 376, 413, 450
HphI	GGTGA	2 cut(s)	292, 496
Hpy166II	GTNNAC	3 cut(s)	52, 333, 360
Hpy188I	TCNGA	4 cut(s)	24, 205, 219, 504
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	3 cut(s)	52, 333, 360
Hpy99I	CGWCG	4 cut(s)	193, 298, 301, 340
HpyCH4III	ACNGT	3 cut(s)	41, 59, 160
HpyCH4IV	ACGT	2 cut(s)	338, 454
HpyCH4V	TGCA	2 cut(s)	333, 429
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 310, 319
HpySE526I	ACGT	2 cut(s)	338, 454
Hsp92II	CATG	2 cut(s)	88, 425
KpnI	GGTACC	2 cut(s)	266, 412
KspAI	GTTAAC	2 cut(s)	52, 360
Kzo9I	GATC	5 cut(s)	112, 207, 219, 417, 462
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	80, 301
LpnPI	CCDG	6 cut(s)	42, 279, 376, 389, 426, 463
Lsp1109I	GCAGC	4 cut(s)	84, 276, 441, 503
LweI	GCATC	2 cut(s)	22, 416
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	2 cut(s)	338, 454
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	5 cut(s)	114, 209, 221, 419, 464
MboI	GATC	5 cut(s)	112, 207, 219, 417, 462
MboII	GAAGA	4 cut(s)	20, 159, 204, 470
MflI	RGATCY	2 cut(s)	207, 417
MhlI	GDGCHC	1 cut(s)	335
MluCI	AATT	1 cut(s)	100
MnlI	CCTC	9 cut(s)	77, 151, 154, 182, 195, 237, 240, 253, 312
MseI	TTAA	3 cut(s)	51, 237, 359
MspI	CCGG	5 cut(s)	266, 363, 376, 413, 450
MspR9I	CCNGG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	3 cut(s)	69, 310, 319
NciI	CCSGG	1 cut(s)	413
NcoI	CCATGG	1 cut(s)	421
NdeII	GATC	5 cut(s)	112, 207, 219, 417, 462
NlaIII	CATG	2 cut(s)	88, 425
NlaIV	GGNNCC	2 cut(s)	264, 410
NmeAIII	GCCGAG	1 cut(s)	48
NruI	TCGCGA	1 cut(s)	467
PciSI	GCTCTTC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PfeI	GAWTC	6 cut(s)	88, 164, 307, 325, 366, 475
PkrI	GCNGC	4 cut(s)	74, 291, 431, 493
PspN4I	GGNNCC	2 cut(s)	264, 410
PsuI	RGATCY	2 cut(s)	207, 417
RruI	TCGCGA	1 cut(s)	467
RsaI	GTAC	3 cut(s)	264, 385, 410
RsaNI	GTAC	3 cut(s)	263, 384, 409
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	3 cut(s)	51, 237, 359
SatI	GCNGC	4 cut(s)	73, 290, 430, 492
Sau3AI	GATC	5 cut(s)	112, 207, 219, 417, 462
ScrFI	CCNGG	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	335
SetI	ASST	8 cut(s)	77, 258, 264, 341, 410, 434, 457, 501
SfaNI	GCATC	2 cut(s)	22, 416
Sse9I	AATT	1 cut(s)	100
SsiI	CCGC	5 cut(s)	5, 78, 278, 381, 396
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	411
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	3 cut(s)	41, 59, 160
TaiI	ACGT	2 cut(s)	341, 457
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	100
TfiI	GAWTC	6 cut(s)	88, 164, 307, 325, 366, 475
Tru1I	TTAA	3 cut(s)	51, 237, 359
Tru9I	TTAA	3 cut(s)	51, 237, 359
TseI	GCWGC	4 cut(s)	72, 289, 429, 491
TspDTI	ATGAA	2 cut(s)	101, 392
TspGWI	ACGGA	3 cut(s)	177, 314, 468
VneI	GTGCAC	1 cut(s)	331
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.