Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009919

Physical Location & Seq

Genomic Coordinates Reverse (-)

1962950 .. 1963996

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGGAAGAGCACAGATGCCAAGCACTAGAAGGTCACCGTCTCTGCGCTAACAGCTGCAGATTCTTCGGCAGCCCGGCCACCATAAATCTCTGCTCCAAATGTTACCGAGACTTTTGCCTCAAGGAGCAACAGGAGGCTTCTATCAAATCCACCGTCGAAGCCTCTCTCTCCGCCTCTGTCTCTCCATCGGTGTCGTCGTCCTCCTCTTCTTCTCTAGTGATTGACTTCCGCTCTCTCCCTCCGCCTCCGCTGTTGACTCTGCCGGAGGTCACCGAGGCCGAAGATGTCCCGACTGTTCCAGAGGTTGCCGTCGCGGCAGTGTCTCAGCCGAATCAGTGCGACGTCTGCCGAAAACGGGTCGGGTTGACCGAGTTCAAGTGCAAGTGCGGGACCACGTTCTGTGGGATCTACCGATATCCGGAGAAGCACGCGTGCTCATTCGATTTCAAGACGGTGGGTAAGGAGGAGATCGCCAGGAGCAACCCTCTGATCAAAGCAGAGAAGCTCGAGAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

174

Amino Acids

18.94

Weight (kDa)

6.8

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	14 - 37	1.2e-10	A20-like zinc finger
zf-AN1	PF01428	114 - 150	9.7e-08	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36320 AT3G52800 AT3G52800
fragaria_vesca	FvH4_4g02120 FvH4_6g18400
malus_domestica	MD12G1023200.v1.1 MD14G1020200.v1.1
prunus_persica	Prupe.7G113400_v2.0.a1 Prupe.7G113400_v2.0.a1
pyrus_communis	pycom12g02160 pycom14g01980
rosa_chinensis	RchiOBHm_Chr3g0472891
rosa_laevigata	RLG00000024047
rosa_roxburghii	Rroxscaffold_6G00408500
rosa_rugosa	Rorug03G0129200 Rorug03G0129300
rosa_samantha	Rh3AG181300 Rh3BG207500 Rh3CG204800 Rh3DG168300
rosa_wichuraiana	Rw3G016190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	348
AccBSI	CCGCTC	1 cut(s)	234
AccII	CGCG	2 cut(s)	317, 434
AccIII	TCCGGA	1 cut(s)	421
AciI	CCGC	7 cut(s)	5, 174, 232, 245, 251, 317, 390
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	358, 421
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	2 cut(s)	379, 451
AjnI	CCWGG	1 cut(s)	476
AluBI	AGCT	2 cut(s)	57, 508
AluI	AGCT	2 cut(s)	57, 508
Alw21I	GWGCWC	2 cut(s)	15, 440
Alw26I	GTCTC	4 cut(s)	47, 105, 187, 330
AlwI	GGATC	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	509
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	2 cut(s)	78, 279
ApeKI	GCWGC	2 cut(s)	57, 72
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	393
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	29, 265
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	393
Bbv12I	GWGCWC	2 cut(s)	15, 440
BbvI	GCAGC	2 cut(s)	44, 84
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	1 cut(s)	296
BcgI	CGANNNNNNTGC	4 cut(s)	49, 83, 99, 133
BciT130I	CCWGG	1 cut(s)	478
BclI	TGATCA	1 cut(s)	492
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	4 cut(s)	47, 105, 187, 330
BfaI	CTAG	2 cut(s)	29, 218
BfmI	CTRYAG	1 cut(s)	58
BglI	GCCNNNNNGGC	1 cut(s)	317
BisI	GCNGC	3 cut(s)	58, 73, 318
BlsI	GCNGC	3 cut(s)	59, 74, 319
Bme1390I	CCNGG	2 cut(s)	77, 478
Bme18I	GGWCC	1 cut(s)	393
BmeT110I	CYCGRG	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	2 cut(s)	77, 478
BmsI	GCATC	1 cut(s)	8
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 421
BseAI	TCCGGA	1 cut(s)	421
BseBI	CCWGG	1 cut(s)	478
BseDI	CCNNGG	1 cut(s)	276
BseLI	CCNNNNNNNGG	2 cut(s)	358, 421
BseMII	CTCAG	1 cut(s)	341
BseRI	GAGGAG	2 cut(s)	196, 482
BseXI	GCAGC	2 cut(s)	44, 84
Bsh1236I	CGCG	2 cut(s)	317, 434
BshFI	GGCC	2 cut(s)	80, 281
BsiHKAI	GWGCWC	2 cut(s)	15, 440
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	3 cut(s)	77, 266, 422
BslFI	GGGAC	2 cut(s)	275, 406
BslI	CCNNNNNNNGG	2 cut(s)	358, 421
BsmAI	GTCTC	4 cut(s)	47, 105, 187, 330
BsmBI	CGTCTC	1 cut(s)	47
BsmFI	GGGAC	2 cut(s)	275, 406
BsnI	GGCC	2 cut(s)	80, 281
BsoBI	CYCGRG	1 cut(s)	509
Bsp1286I	GDGCHC	2 cut(s)	15, 440
Bsp13I	TCCGGA	1 cut(s)	421
Bsp143I	GATC	3 cut(s)	408, 471, 492
BspACI	CCGC	7 cut(s)	5, 174, 232, 245, 251, 317, 390
BspANI	GGCC	2 cut(s)	80, 281
BspCNI	CTCAG	1 cut(s)	340
BspEI	TCCGGA	1 cut(s)	421
BspFNI	CGCG	2 cut(s)	317, 434
BspLI	GGNNCC	1 cut(s)	394
BspMAI	CTGCAG	1 cut(s)	62
BspPI	GGATC	1 cut(s)	416
BspQI	GCTCTTC	1 cut(s)	3
BsrBI	CCGCTC	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	3 cut(s)	408, 471, 492
BssNI	GRCGYC	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	478
Bst4CI	ACNGT	4 cut(s)	41, 157, 298, 457
Bst6I	CTCTTC	2 cut(s)	3, 214
BstACI	GRCGYC	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	432, 436
BstDEI	CTNAG	1 cut(s)	327
BstEII	GGTNACC	2 cut(s)	35, 271
BstFNI	CGCG	2 cut(s)	317, 434
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	3 cut(s)	411, 474, 495
BstMAI	GTCTC	4 cut(s)	47, 105, 187, 330
BstMBI	GATC	3 cut(s)	408, 471, 492
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 317, 348
BstNI	CCWGG	1 cut(s)	478
BstPI	GGTNACC	2 cut(s)	35, 271
BstSCI	CCNGG	2 cut(s)	75, 476
BstSFI	CTRYAG	1 cut(s)	58
BstUI	CGCG	2 cut(s)	317, 434
BstV1I	GCAGC	2 cut(s)	44, 84
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	80, 281
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	2 cut(s)	327, 344
Cac8I	GCNNGC	2 cut(s)	432, 436
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	393
CviJI	RGCY	8 cut(s)	57, 75, 80, 140, 164, 281, 331, 508
CviKI_1	RGCY	8 cut(s)	57, 75, 80, 140, 164, 281, 331, 508
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	3 cut(s)	410, 473, 494
DpnII	GATC	3 cut(s)	408, 471, 492
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	3, 214
EarI	CTCTTC	2 cut(s)	3, 214
EciI	GGCGGA	3 cut(s)	20, 163, 234
Eco32I	GATATC	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	393
Eco88I	CYCGRG	1 cut(s)	509
Eco91I	GGTNACC	2 cut(s)	35, 271
EcoO65I	GGTNACC	2 cut(s)	35, 271
EcoRII	CCWGG	1 cut(s)	476
EcoRV	GATATC	1 cut(s)	419
Esp3I	CGTCTC	1 cut(s)	47
FaiI	YATR	1 cut(s)	86
FaqI	GGGAC	2 cut(s)	275, 406
FauI	CCCGC	1 cut(s)	383
FbaI	TGATCA	1 cut(s)	492
Fnu4HI	GCNGC	3 cut(s)	58, 73, 318
Fsp4HI	GCNGC	3 cut(s)	58, 73, 318
FspBI	CTAG	2 cut(s)	29, 218
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	3 cut(s)	58, 73, 318
HaeIII	GGCC	2 cut(s)	80, 281
HapII	CCGG	3 cut(s)	77, 266, 422
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	345
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	2 cut(s)	258, 369
HindII	GTYRAC	2 cut(s)	258, 369
HinfI	GANTC	3 cut(s)	63, 259, 334
HpaII	CCGG	3 cut(s)	77, 266, 422
HphI	GGTGA	2 cut(s)	29, 265
Hpy166II	GTNNAC	2 cut(s)	258, 369
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	5 cut(s)	292, 302, 422, 451, 511
Hpy8I	GTNNAC	2 cut(s)	258, 369
Hpy99I	CGWCG	4 cut(s)	161, 202, 317, 347
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	4 cut(s)	41, 157, 298, 457
HpyCH4IV	ACGT	2 cut(s)	345, 398
HpyCH4V	TGCA	2 cut(s)	60, 384
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 317, 348
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	2 cut(s)	345, 398
Hsp92I	GRCGYC	1 cut(s)	345
HspAI	GCGC	1 cut(s)	48
Kpn2I	TCCGGA	1 cut(s)	421
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	3 cut(s)	408, 471, 492
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	101, 127, 480
LpnPI	CCDG	7 cut(s)	90, 119, 279, 315, 435, 463, 490
Lsp1109I	GCAGC	2 cut(s)	44, 84
LweI	GCATC	1 cut(s)	8
MaeI	CTAG	2 cut(s)	29, 218
MaeII	ACGT	2 cut(s)	345, 398
MaeIII	GTNAC	3 cut(s)	35, 104, 271
MalI	GATC	3 cut(s)	410, 473, 494
MbiI	CCGCTC	1 cut(s)	234
MboI	GATC	3 cut(s)	408, 471, 492
MboII	GAAGA	5 cut(s)	20, 58, 201, 204, 296
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	2 cut(s)	15, 440
MluI	ACGCGT	1 cut(s)	432
MlyI	GAGTC	1 cut(s)	253
MroI	TCCGGA	1 cut(s)	421
MspA1I	CMGCKG	2 cut(s)	57, 253
MspI	CCGG	3 cut(s)	77, 266, 422
MspR9I	CCNGG	2 cut(s)	77, 478
MvaI	CCWGG	1 cut(s)	478
MvnI	CGCG	2 cut(s)	317, 434
MwoI	GCNNNNNNNGC	3 cut(s)	54, 317, 348
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	3 cut(s)	408, 471, 492
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	2 cut(s)	35, 271
PaeR7I	CTCGAG	1 cut(s)	509
PciSI	GCTCTTC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	2 cut(s)	197, 369
PfeI	GAWTC	2 cut(s)	63, 334
PkrI	GCNGC	3 cut(s)	59, 74, 319
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	476
PspEI	GGTNACC	2 cut(s)	35, 271
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	393
PstI	CTGCAG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	408
PvuII	CAGCTG	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	3
SatI	GCNGC	3 cut(s)	58, 73, 318
Sau3AI	GATC	3 cut(s)	408, 471, 492
Sau96I	GGNCC	1 cut(s)	393
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	77, 478
SduI	GDGCHC	2 cut(s)	15, 440
SetI	ASST	7 cut(s)	37, 59, 273, 309, 348, 401, 510
SfaNI	GCATC	1 cut(s)	8
SfcI	CTRYAG	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	393
SlaI	CTCGAG	1 cut(s)	509
SmlI	CTYRAG	2 cut(s)	122, 509
SmoI	CTYRAG	2 cut(s)	122, 509
SsiI	CCGC	7 cut(s)	5, 174, 232, 245, 251, 317, 390
SspMI	CTAG	2 cut(s)	29, 218
StyD4I	CCNGG	2 cut(s)	75, 476
TaaI	ACNGT	4 cut(s)	41, 157, 298, 457
TaiI	ACGT	2 cut(s)	348, 401
TaqI	TCGA	3 cut(s)	159, 444, 510
TaqII	GACCGA	1 cut(s)	386
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	63, 334
TscAI	CASTG	2 cut(s)	327, 344
TseFI	GTSAC	2 cut(s)	35, 271
TseI	GCWGC	2 cut(s)	57, 72
Tsp45I	GTSAC	2 cut(s)	35, 271
TspRI	CASTG	2 cut(s)	327, 344
VpaK11BI	GGWCC	1 cut(s)	393
XhoI	CTCGAG	1 cut(s)	509
XspI	CTAG	2 cut(s)	29, 218
ZraI	GACGTC	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.