Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009919

Physical Location & Seq

Genomic Coordinates Reverse (-)

30972963 .. 30975104

Gene Structure 2142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGGAAGAGCACAGATGCCAAGCACCAGAAGGTCACCGTCTCTGCGCTAACAACTGCGGATTCTTCGGCAGCCCGGCCACCATGAATCTCTGCTCCAAATGTTACAGAGACTTTTGCCTCAAGGAGCAACAGGAGGCCTCCATCAAATCCACCGTCGAAGCCTCTCTCTCCGCCTCCGCAGCCGCCTCTTCATCGGCCTCGTCGTCCTCCTCTTCTCCGGTGATTGACTTACGCTCTCTCCCTCCGCCTCCGCTGTTGACTTTGCCGGAGGTCGCCGAGGCCGAAGATGTTCCCACTCCTCCAGAGGTCGCCGTCCCGGCGGTGTCGCAGCCGAACCGGTGCAACGTCTGCCGGAAACGGGTCGGGTTGACCGGGTTCAAGTGCAAGTGCGGGACCACCTTCTGCGGGGTCCACCGTTACCCGGAGAAGCACGCGTGCTCGTTCGACTTCAAGACGGTCGGGAAGGAGGAGATCGCGAGGAGCAATCCGGTGATCAAAGCAGAGAAGCTCGAGAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

174

Amino Acids

18.7

Weight (kDa)

7.97

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	14 - 37	2.1e-13	A20-like zinc finger
zf-AN1	PF01428	115 - 151	8.7e-10	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36320 AT3G52800 AT3G52800
fragaria_vesca	FvH4_4g02120 FvH4_6g18400
malus_domestica	MD12G1023200.v1.1 MD14G1020200.v1.1
prunus_persica	Prupe.7G113400_v2.0.a1 Prupe.7G113400_v2.0.a1
pyrus_communis	pycom12g02160 pycom14g01980
rosa_chinensis	RchiOBHm_Chr3g0472891
rosa_laevigata	RLG00000024047
rosa_roxburghii	Rroxscaffold_6G00408500
rosa_rugosa	Rorug03G0129200 Rorug03G0129300
rosa_samantha	Rh3AG181300 Rh3BG207500 Rh3CG204800 Rh3DG168300
rosa_wichuraiana	Rw3G016190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	437, 479
AcoI	YGGCCR	1 cut(s)	78
AfiI	CCNNNNNNNGG	3 cut(s)	361, 408, 424
AflIII	ACRYGT	1 cut(s)	435
AgeI	ACCGGT	1 cut(s)	339
AgsI	TTSAA	2 cut(s)	382, 454
AluBI	AGCT	1 cut(s)	511
AluI	AGCT	1 cut(s)	511
Alw21I	GWGCWC	2 cut(s)	15, 443
Alw26I	GTCTC	2 cut(s)	47, 105
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	4 cut(s)	78, 138, 198, 282
ApeKI	GCWGC	3 cut(s)	72, 182, 331
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AsiGI	ACCGGT	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	396, 412
AsuC2I	CCSGG	4 cut(s)	77, 320, 376, 425
AsuHPI	GGTGA	3 cut(s)	29, 235, 505
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	2 cut(s)	396, 412
Bbv12I	GWGCWC	2 cut(s)	15, 443
BbvI	GCAGC	3 cut(s)	84, 194, 343
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	299
BclI	TGATCA	1 cut(s)	495
BcnI	CCSGG	4 cut(s)	77, 320, 376, 425
BcoDI	GTCTC	2 cut(s)	47, 105
BglI	GCCNNNNNGGC	1 cut(s)	320
BisI	GCNGC	4 cut(s)	73, 183, 186, 332
BlsI	GCNGC	4 cut(s)	74, 184, 187, 333
Bme1390I	CCNGG	4 cut(s)	77, 320, 376, 425
Bme18I	GGWCC	2 cut(s)	396, 412
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	2 cut(s)	396, 412
BmiI	GGNNCC	2 cut(s)	397, 413
BmrFI	CCNGG	4 cut(s)	77, 320, 376, 425
BmsI	GCATC	1 cut(s)	8
BpmI	CTGGAG	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	4 cut(s)	77, 320, 376, 425
BsaJI	CCNNGG	1 cut(s)	279
BsaWI	WCCGGW	3 cut(s)	220, 339, 490
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 408, 424
Bse118I	RCCGGY	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	279
BseLI	CCNNNNNNNGG	3 cut(s)	361, 408, 424
BseRI	GAGGAG	4 cut(s)	202, 291, 485, 496
BseXI	GCAGC	3 cut(s)	84, 194, 343
Bsh1236I	CGCG	2 cut(s)	437, 479
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	4 cut(s)	80, 140, 200, 284
BshTI	ACCGGT	1 cut(s)	339
BsiEI	CGRYCG	1 cut(s)	462
BsiHKAI	GWGCWC	2 cut(s)	15, 443
BsiHKCI	CYCGRG	1 cut(s)	512
BsiSI	CCGG	9 cut(s)	77, 221, 269, 320, 340, 355, 375, 425, 491
BslFI	GGGAC	2 cut(s)	302, 409
BslI	CCNNNNNNNGG	3 cut(s)	361, 408, 424
BsmAI	GTCTC	2 cut(s)	47, 105
BsmBI	CGTCTC	1 cut(s)	47
BsmFI	GGGAC	2 cut(s)	302, 409
BsnI	GGCC	4 cut(s)	80, 140, 200, 284
BsoBI	CYCGRG	1 cut(s)	512
Bsp1286I	GDGCHC	2 cut(s)	15, 443
Bsp143I	GATC	2 cut(s)	474, 495
Bsp68I	TCGCGA	1 cut(s)	479
BspANI	GGCC	4 cut(s)	80, 140, 200, 284
BspFNI	CGCG	2 cut(s)	437, 479
BspLI	GGNNCC	2 cut(s)	397, 413
BspQI	GCTCTTC	1 cut(s)	3
BsrFI	RCCGGY	1 cut(s)	339
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	2 cut(s)	474, 495
Bst4CI	ACNGT	4 cut(s)	41, 157, 419, 460
Bst6I	CTCTTC	3 cut(s)	3, 196, 220
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstC8I	GCNNGC	2 cut(s)	435, 439
BstEII	GGTNACC	1 cut(s)	35
BstFNI	CGCG	2 cut(s)	437, 479
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	2 cut(s)	477, 498
BstMAI	GTCTC	2 cut(s)	47, 105
BstMBI	GATC	2 cut(s)	474, 495
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 320, 351
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	4 cut(s)	75, 318, 374, 423
BstUI	CGCG	2 cut(s)	437, 479
BstV1I	GCAGC	3 cut(s)	84, 194, 343
BsuRI	GGCC	4 cut(s)	80, 140, 200, 284
BtuMI	TCGCGA	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	435, 439
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	339
Cfr13I	GGNCC	2 cut(s)	396, 412
CspAI	ACCGGT	1 cut(s)	339
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	9 cut(s)	75, 80, 140, 164, 185, 200, 284, 334, 511
CviKI_1	RGCY	9 cut(s)	75, 80, 140, 164, 185, 200, 284, 334, 511
DpnI	GATC	2 cut(s)	476, 497
DpnII	GATC	2 cut(s)	474, 495
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	3 cut(s)	3, 196, 220
EarI	CTCTTC	3 cut(s)	3, 196, 220
EciI	GGCGGA	3 cut(s)	20, 163, 237
Eco147I	AGGCCT	1 cut(s)	140
Eco47I	GGWCC	2 cut(s)	396, 412
Eco88I	CYCGRG	1 cut(s)	512
Eco91I	GGTNACC	1 cut(s)	35
EcoO65I	GGTNACC	1 cut(s)	35
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	1 cut(s)	88
FaiI	YATR	1 cut(s)	86
FaqI	GGGAC	2 cut(s)	302, 409
FatI	CATG	1 cut(s)	84
FauI	CCCGC	2 cut(s)	386, 401
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	4 cut(s)	73, 183, 186, 332
Fsp4HI	GCNGC	4 cut(s)	73, 183, 186, 332
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	4 cut(s)	73, 183, 186, 332
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	4 cut(s)	80, 140, 200, 284
HapII	CCGG	9 cut(s)	77, 221, 269, 320, 340, 355, 375, 425, 491
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	2 cut(s)	261, 372
HindII	GTYRAC	2 cut(s)	261, 372
HinfI	GANTC	2 cut(s)	63, 88
HpaII	CCGG	9 cut(s)	77, 221, 269, 320, 340, 355, 375, 425, 491
HphI	GGTGA	3 cut(s)	29, 235, 505
Hpy166II	GTNNAC	3 cut(s)	261, 372, 415
Hpy188III	TCNNGA	5 cut(s)	305, 454, 463, 478, 514
Hpy8I	GTNNAC	3 cut(s)	261, 372, 415
Hpy99I	CGWCG	2 cut(s)	161, 208
HpyAV	CCTTC	3 cut(s)	26, 412, 460
HpyCH4III	ACNGT	4 cut(s)	41, 157, 419, 460
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	2 cut(s)	345, 387
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 320, 351
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	2 cut(s)	474, 495
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	101, 127, 483
Lsp1109I	GCAGC	3 cut(s)	84, 194, 343
LweI	GCATC	1 cut(s)	8
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	3 cut(s)	35, 104, 419
MalI	GATC	2 cut(s)	476, 497
MboI	GATC	2 cut(s)	474, 495
MboII	GAAGA	5 cut(s)	20, 58, 183, 207, 299
MhlI	GDGCHC	2 cut(s)	15, 443
MluI	ACGCGT	1 cut(s)	435
MroXI	GAANNNNTTC	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	9 cut(s)	77, 221, 269, 320, 340, 355, 375, 425, 491
MspR9I	CCNGG	4 cut(s)	77, 320, 376, 425
MvnI	CGCG	2 cut(s)	437, 479
MwoI	GCNNNNNNNGC	3 cut(s)	182, 320, 351
NciI	CCSGG	4 cut(s)	77, 320, 376, 425
NdeII	GATC	2 cut(s)	474, 495
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	2 cut(s)	397, 413
NmeAIII	GCCGAG	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	35
NruI	TCGCGA	1 cut(s)	479
PaeR7I	CTCGAG	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	2 cut(s)	203, 282
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	63, 88
PinAI	ACCGGT	1 cut(s)	339
PkrI	GCNGC	4 cut(s)	74, 184, 187, 333
PspEI	GGTNACC	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	397, 413
PspPI	GGNCC	2 cut(s)	396, 412
RruI	TCGCGA	1 cut(s)	479
SapI	GCTCTTC	1 cut(s)	3
SatI	GCNGC	4 cut(s)	73, 183, 186, 332
Sau3AI	GATC	2 cut(s)	474, 495
Sau96I	GGNCC	2 cut(s)	396, 412
ScrFI	CCNGG	4 cut(s)	77, 320, 376, 425
SduI	GDGCHC	2 cut(s)	15, 443
SetI	ASST	6 cut(s)	37, 276, 312, 351, 404, 513
SfaNI	GCATC	1 cut(s)	8
Sfr274I	CTCGAG	1 cut(s)	512
SinI	GGWCC	2 cut(s)	396, 412
SlaI	CTCGAG	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	122, 512
SmoI	CTYRAG	2 cut(s)	122, 512
SseBI	AGGCCT	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	4 cut(s)	75, 318, 374, 423
TaaI	ACNGT	4 cut(s)	41, 157, 419, 460
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	3 cut(s)	159, 447, 513
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	63, 88
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	3 cut(s)	72, 182, 331
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	2 cut(s)	101, 183
VpaK11BI	GGWCC	2 cut(s)	396, 412
XhoI	CTCGAG	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.