AT2G37110

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009470
Physical Location & Seq
Forward (+)
15592552 .. 15594033
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37110.1

Sequence Viewer

Length: 729 bp
ATGGCGGGAGAAGATAGCCGTGAAGCTCAACGAGGCGACGAATATGAGGAATCGAGTCCTCTCTTGAAGGTGAACGAGAATGACGGCAAGATCTGCTCGAAAAGAGATGCCAAGGCGGCGCCTCTTGTGCCTCCTCCCGCGGCGGAGGAATACGGCTGGACGGCGGATGGATTGCCTGTGAGCCATGGTAGCGTGATTGGCGAGCCGATCAGGAGAAACCAGTGGAATTCTGGTCTTTTTACCTGTCTTGGTCGCAATGATGAATTTTGCAGCAGCGATCTCGAAGTTTGTCTTCTTGGAAGTGTGGCTCCTTGTGTGTTGTATGGAACTAATGCAGAGAGACTTGGGTCTGCTCCGGGAACATTTTCAAACCATTGCTTGACGTATTTGGGATTGTACTTTGTTGGTAATTCTTTGTTTGGCTGGAACTGTCTTGCTCCATGGTTCTCTTATTCTAGCCGTTCTGCTATTCGCCGAAAGTTTAACCTTGAGGGAAGCTTTGAGGCTATGAACAGGTCTTGTGGTTGCTGCGGTGGCTGCATAGAGGACGAGATGCAAAGGGAACACTTGGAGACGACTTGTGACTTTGTGACACATGTCCTTTGCCATACATGTGCCCTTTGCCAAGAAGGGCGTGAGCTCCGCAGGAAGGTTCTTCACCCAGGTTTCAATGCTCAGTCCACCGTTGTTGTGATGCCACCCATAGAACAAACCATGGGTCGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

242

Amino Acids

26.64

Weight (kDa)

5.43

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 75 - 213 6.6e-18 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 118
AccII CGCG 1 cut(s) 140
AciI CCGC 8 cut(s) 5, 116, 138, 140, 143, 164, 531, 643
AcsI RAATTY 2 cut(s) 226, 263
AcyI GRCGYC 1 cut(s) 119
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 649
AflIII ACRYGT 2 cut(s) 595, 611
AgsI TTSAA 3 cut(s) 67, 369, 670
AjnI CCWGG 1 cut(s) 661
AluBI AGCT 3 cut(s) 26, 498, 640
AluI AGCT 3 cut(s) 26, 498, 640
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 2 cut(s) 334, 566
ApeKI GCWGC 4 cut(s) 270, 273, 528, 537
ApoI RAATTY 2 cut(s) 226, 263
ArsI GACNNNNNNTTYG 1 cut(s) 703
Asp700I GAANNNNTTC 1 cut(s) 364
AspLEI GCGC 1 cut(s) 121
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 2 cut(s) 82, 650
BaeGI GKGCMC 1 cut(s) 619
BanI GGYRCC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 642
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 642
BbvI GCAGC 4 cut(s) 282, 285, 515, 524
BccI CCATC 1 cut(s) 161
BceAI ACGGC 5 cut(s) 3, 100, 169, 177, 444
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 1 cut(s) 663
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 334, 566
BfaI CTAG 1 cut(s) 456
BfoI RGCGCY 1 cut(s) 122
BglI GCCNNNNNGGC 1 cut(s) 116
BglII AGATCT 1 cut(s) 90
BisI GCNGC 6 cut(s) 117, 141, 271, 274, 529, 538
BlsI GCNGC 6 cut(s) 118, 142, 272, 275, 530, 539
Bme1390I CCNGG 2 cut(s) 357, 663
BmiI GGNNCC 2 cut(s) 120, 309
BmrFI CCNGG 2 cut(s) 357, 663
BmsI GCATC 3 cut(s) 97, 543, 684
BoxI GACNNNNGTC 2 cut(s) 346, 596
BpiI GAAGAC 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 509
BpuMI CCSGG 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 119
BsaJI CCNNGG 6 cut(s) 111, 138, 184, 440, 661, 714
Bsc4I CCNNNNNNNGG 1 cut(s) 649
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 2 cut(s) 262, 373
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 6 cut(s) 111, 138, 184, 440, 661, 714
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 649
BseMI GCAATG 2 cut(s) 262, 373
BseMII CTCAG 1 cut(s) 689
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 123
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 4 cut(s) 282, 285, 515, 524
Bsh1236I CGCG 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 642
BsiSI CCGG 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 649
BsmAI GTCTC 2 cut(s) 334, 566
BsmBI CGTCTC 1 cut(s) 566
Bsp1286I GDGCHC 2 cut(s) 619, 642
Bsp143I GATC 3 cut(s) 90, 207, 277
Bsp19I CCATGG 3 cut(s) 184, 440, 714
BspACI CCGC 8 cut(s) 5, 116, 138, 140, 143, 164, 531, 643
BspCNI CTCAG 1 cut(s) 688
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 120, 309
BspT107I GGYRCC 1 cut(s) 118
BsrDI GCAATG 2 cut(s) 262, 373
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 6 cut(s) 111, 138, 184, 440, 661, 714
BssMI GATC 3 cut(s) 90, 207, 277
BssNI GRCGYC 1 cut(s) 119
BssT1I CCWWGG 4 cut(s) 111, 184, 440, 714
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 2 cut(s) 431, 685
BstACI GRCGYC 1 cut(s) 119
BstAPI GCANNNNNTGC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 675
BstDSI CCRYGG 4 cut(s) 138, 184, 440, 714
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 140
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 3 cut(s) 93, 210, 280
BstMAI GTCTC 2 cut(s) 334, 566
BstMBI GATC 3 cut(s) 90, 207, 277
BstMWI GCNNNNNNNGC 7 cut(s) 93, 116, 127, 189, 198, 534, 537
BstNI CCWGG 1 cut(s) 663
BstNSI RCATGY 2 cut(s) 599, 615
BstPAI GACNNNNGTC 2 cut(s) 346, 596
BstSCI CCNGG 2 cut(s) 355, 661
BstSLI GKGCMC 1 cut(s) 619
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 4 cut(s) 282, 285, 515, 524
BstV2I GAAGAC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BtgI CCRYGG 4 cut(s) 138, 184, 440, 714
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 203
CfoI GCGC 1 cut(s) 121
Cfr42I CCGCGG 1 cut(s) 141
Csp6I GTAC 1 cut(s) 397
CspCI CAANNNNNGTGG 2 cut(s) 670, 705
CviAII CATG 5 cut(s) 185, 441, 596, 612, 715
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 1 cut(s) 675
DinI GGCGCC 1 cut(s) 120
DpnI GATC 3 cut(s) 92, 209, 279
DpnII GATC 3 cut(s) 90, 207, 277
EciI GGCGGA 2 cut(s) 158, 179
Ecl136II GAGCTC 1 cut(s) 640
Eco130I CCWWGG 4 cut(s) 111, 184, 440, 714
Eco24I GRGCYC 1 cut(s) 642
Eco53kI GAGCTC 1 cut(s) 640
EcoICRI GAGCTC 1 cut(s) 640
EcoRI GAATTC 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 661
EcoT14I CCWWGG 4 cut(s) 111, 184, 440, 714
EcoT38I GRGCYC 1 cut(s) 642
EgeI GGCGCC 1 cut(s) 120
EheI GGCGCC 1 cut(s) 120
ErhI CCWWGG 4 cut(s) 111, 184, 440, 714
Esp3I CGTCTC 1 cut(s) 566
FaeI CATG 5 cut(s) 188, 444, 599, 615, 718
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FatI CATG 5 cut(s) 184, 440, 595, 611, 714
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 6 cut(s) 117, 141, 271, 274, 529, 538
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 1 cut(s) 642
Fsp4HI GCNGC 6 cut(s) 117, 141, 271, 274, 529, 538
FspBI CTAG 1 cut(s) 456
GlaI GCGC 1 cut(s) 120
GluI GCNGC 6 cut(s) 117, 141, 271, 274, 529, 538
HaeII RGCGCY 1 cut(s) 122
HapII CCGG 1 cut(s) 356
HhaI GCGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 119
Hin1II CATG 5 cut(s) 188, 444, 599, 615, 718
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 496
HinfI GANTC 2 cut(s) 50, 55
HpaII CCGG 1 cut(s) 356
HphI GGTGA 2 cut(s) 82, 650
Hpy166II GTNNAC 2 cut(s) 73, 681
Hpy188III TCNNGA 3 cut(s) 64, 211, 281
Hpy8I GTNNAC 2 cut(s) 73, 681
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 61, 623, 643
HpyCH4III ACNGT 2 cut(s) 431, 685
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 4 cut(s) 270, 335, 540, 556
HpyF10VI GCNNNNNNNGC 7 cut(s) 93, 116, 127, 189, 198, 534, 537
HpyF3I CTNAG 1 cut(s) 675
HpySE526I ACGT 1 cut(s) 383
Hsp92I GRCGYC 1 cut(s) 119
Hsp92II CATG 5 cut(s) 188, 444, 599, 615, 718
HspAI GCGC 1 cut(s) 119
KasI GGCGCC 1 cut(s) 118
KspI CCGCGG 1 cut(s) 141
Kzo9I GATC 3 cut(s) 90, 207, 277
LmnI GCTCC 4 cut(s) 313, 358, 442, 645
Lsp1109I GCAGC 4 cut(s) 282, 285, 515, 524
LweI GCATC 3 cut(s) 97, 543, 684
MaeI CTAG 1 cut(s) 456
MaeII ACGT 1 cut(s) 383
MaeIII GTNAC 2 cut(s) 581, 589
MalI GATC 3 cut(s) 92, 209, 279
MboI GATC 3 cut(s) 90, 207, 277
MboII GAAGA 3 cut(s) 23, 284, 647
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 2 cut(s) 619, 642
MluCI AATT 3 cut(s) 226, 263, 409
Mly113I GGCGCC 1 cut(s) 119
MlyI GAGTC 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 364
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 2 cut(s) 357, 663
MvaI CCWGG 1 cut(s) 663
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 7 cut(s) 93, 116, 127, 189, 198, 534, 537
NarI GGCGCC 1 cut(s) 119
NciI CCSGG 1 cut(s) 357
NcoI CCATGG 3 cut(s) 184, 440, 714
NdeII GATC 3 cut(s) 90, 207, 277
NlaIII CATG 5 cut(s) 188, 444, 599, 615, 718
NlaIV GGNNCC 2 cut(s) 120, 309
NmuCI GTSAC 2 cut(s) 581, 589
NspI RCATGY 2 cut(s) 599, 615
PciI ACATGT 2 cut(s) 595, 611
PdmI GAANNNNTTC 1 cut(s) 364
PfeI GAWTC 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 355
PkrI GCNGC 6 cut(s) 118, 142, 272, 275, 530, 539
PleI GAGTC 1 cut(s) 63
PluTI GGCGCC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 63
PscI ACATGT 2 cut(s) 595, 611
PshAI GACNNNNGTC 2 cut(s) 346, 596
Psp124BI GAGCTC 1 cut(s) 642
Psp6I CCWGG 1 cut(s) 661
PspGI CCWGG 1 cut(s) 661
PspN4I GGNNCC 2 cut(s) 120, 309
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 612
SacI GAGCTC 1 cut(s) 642
SacII CCGCGG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 6 cut(s) 117, 141, 271, 274, 529, 538
Sau3AI GATC 3 cut(s) 90, 207, 277
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 357, 663
SduI GDGCHC 2 cut(s) 619, 642
SfaNI GCATC 3 cut(s) 97, 543, 684
SfoI GGCGCC 1 cut(s) 120
Sfr303I CCGCGG 1 cut(s) 141
SgrBI CCGCGG 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 3 cut(s) 226, 263, 409
SsiI CCGC 8 cut(s) 5, 116, 138, 140, 143, 164, 531, 643
SspDI GGCGCC 1 cut(s) 118
SspMI CTAG 1 cut(s) 456
SstI GAGCTC 1 cut(s) 642
StyD4I CCNGG 2 cut(s) 355, 661
StyI CCWWGG 4 cut(s) 111, 184, 440, 714
TaaI ACNGT 2 cut(s) 431, 685
TaiI ACGT 1 cut(s) 386
TaqI TCGA 3 cut(s) 53, 98, 282
TasI AATT 3 cut(s) 226, 263, 409
TatI WGTACW 1 cut(s) 396
TauI GCSGC 2 cut(s) 119, 143
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 1 cut(s) 227
TseFI GTSAC 2 cut(s) 581, 589
TseI GCWGC 4 cut(s) 270, 273, 528, 537
Tsp45I GTSAC 2 cut(s) 581, 589
TspDTI ATGAA 2 cut(s) 276, 524
TspRI CASTG 1 cut(s) 227
XapI RAATTY 2 cut(s) 226, 263
XceI RCATGY 2 cut(s) 599, 615
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 364
XspI CTAG 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.