Rroxscaffold_6G00412280

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0009470
Physical Location & Seq
Reverse (-)
34888217 .. 34889626
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412280.1

Sequence Viewer

Length: 753 bp
ATGGCGGGCAACAGGGAGAGCAATGTCCAGGAGGAATCGAGCCCTCTTCTGAGCCAGCAATTCCAGGAGCCTGAGAAGCCGTCCAAGGCCGCACCGGCGTCTCAGACCGACGAGAAGTCTCCCGTTCAGATGGGCCAGGTCAACGGCGGCGGTAATGGATGCGGGTGGACCGCCGATGGGCTGCCGTTGACTCACAGCAGCGTGGTGGCCGGTGAGCCCATGGGCCGGAGCCAGTGGGACTCGGACCTTCTTGCCTGTCTTGGCCGGAACGATGAGTTCTGTAGCAGCGATCTTGAAGTTTGCCTTCTTGGAAGTGTGGCTCCTTGTGTGTTGTATGGAACCAATGCCGAGAGACTTTCTTCTTCTACGGGGAGCTCATTTGCATCTCACTGTTTGACTTACTCTGGTCTATATTTAATTGGATATGCCTTTGGTTTGAACTGCCTTGCACCATGGTTTGCAGCTCGTAACCGTACTGCTATGCGCCACAAGTTCAACCTCCAGGCAAGTTATATTTTCCCTTTTGTGTGTGGTTGCTGTGAAGCATGTGGGTGCTGTGGATCAATGGGAGATGAGGATGAGGAACAGTGTGAGGCCTTCTGTGATGTGGTGACTCATTTGTGCTGCCATCAATGTGCCCTTTGCCAGGAAGGTCGTGAGGTCCGTCGCAGGTTGCCTCATCCCGGTTTTAATGCTCAACCCGTTCTGGTTATGATTCCTCCTGGAGAGCAAGGCATGGGCCGTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

250

Amino Acids

26.84

Weight (kDa)

4.87

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 79 - 220 1.2e-12 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 660
AciI CCGC 6 cut(s) 5, 90, 147, 150, 162, 171
AclWI GGATC 1 cut(s) 568
AcoI YGGCCR 2 cut(s) 207, 262
AcyI GRCGYC 1 cut(s) 98
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 4 cut(s) 177, 225, 646, 683
AgsI TTSAA 3 cut(s) 296, 439, 496
AhdI GACNNNNNGTC 1 cut(s) 115
AjnI CCWGG 6 cut(s) 27, 63, 135, 501, 645, 721
AluBI AGCT 3 cut(s) 375, 464, 749
AluI AGCT 3 cut(s) 375, 464, 749
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 3 cut(s) 105, 123, 346
AlwI GGATC 1 cut(s) 568
AoxI GGCC 7 cut(s) 87, 133, 207, 223, 262, 594, 739
ApeKI GCWGC 5 cut(s) 181, 198, 285, 461, 624
AspLEI GCGC 1 cut(s) 486
AspS9I GGNCC 6 cut(s) 133, 168, 223, 244, 661, 739
AsuC2I CCSGG 1 cut(s) 684
AsuHPI GGTGA 2 cut(s) 224, 622
AvaII GGWCC 3 cut(s) 168, 244, 661
BaeGI GKGCMC 1 cut(s) 640
BanII GRGCYC 3 cut(s) 44, 219, 377
Bbv12I GWGCWC 1 cut(s) 377
BbvI GCAGC 5 cut(s) 168, 210, 297, 473, 611
BccI CCATC 3 cut(s) 124, 170, 636
BceAI ACGGC 4 cut(s) 64, 160, 169, 726
BciT130I CCWGG 6 cut(s) 29, 65, 137, 503, 647, 723
BcnI CCSGG 1 cut(s) 684
BcoDI GTCTC 3 cut(s) 105, 123, 346
BfmI CTRYAG 1 cut(s) 280
BfuAI ACCTGC 1 cut(s) 660
BglI GCCNNNNNGGC 1 cut(s) 95
BisI GCNGC 7 cut(s) 90, 148, 182, 199, 286, 462, 625
BlsI GCNGC 7 cut(s) 91, 149, 183, 200, 287, 463, 626
Bme1390I CCNGG 7 cut(s) 29, 65, 137, 503, 647, 684, 723
Bme18I GGWCC 3 cut(s) 168, 244, 661
BmeRI GACNNNNNGTC 1 cut(s) 115
BmgT120I GGNCC 6 cut(s) 133, 168, 223, 244, 661, 739
BmiI GGNNCC 4 cut(s) 69, 230, 321, 340
BmrFI CCNGG 7 cut(s) 29, 65, 137, 503, 647, 684, 723
BmsI GCATC 2 cut(s) 149, 392
BpmI CTGGAG 2 cut(s) 485, 744
BpuMI CCSGG 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 98
BsaJI CCNNGG 3 cut(s) 84, 219, 452
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 225, 646, 683
Bse118I RCCGGY 2 cut(s) 94, 209
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 28
BseBI CCWGG 6 cut(s) 29, 65, 137, 503, 647, 723
BseDI CCNNGG 3 cut(s) 84, 219, 452
BseGI GGATG 3 cut(s) 164, 583, 679
BseLI CCNNNNNNNGG 4 cut(s) 177, 225, 646, 683
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 3 cut(s) 41, 63, 116
BseNI ACTGG 1 cut(s) 232
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 5 cut(s) 168, 210, 297, 473, 611
BshFI GGCC 7 cut(s) 89, 135, 209, 225, 264, 596, 741
BsiHKAI GWGCWC 1 cut(s) 377
BsiSI CCGG 5 cut(s) 95, 210, 226, 265, 684
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 4 cut(s) 177, 225, 646, 683
BsmAI GTCTC 3 cut(s) 105, 123, 346
BsmBI CGTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 7 cut(s) 89, 135, 209, 225, 264, 596, 741
Bsp1286I GDGCHC 4 cut(s) 44, 219, 377, 640
Bsp143I GATC 2 cut(s) 289, 560
Bsp19I CCATGG 2 cut(s) 219, 452
BspACI CCGC 6 cut(s) 5, 90, 147, 150, 162, 171
BspANI GGCC 7 cut(s) 89, 135, 209, 225, 264, 596, 741
BspCNI CTCAG 3 cut(s) 42, 64, 115
BspLI GGNNCC 4 cut(s) 69, 230, 321, 340
BspMI ACCTGC 1 cut(s) 660
BspPI GGATC 1 cut(s) 568
BsrDI GCAATG 1 cut(s) 28
BsrFI RCCGGY 2 cut(s) 94, 209
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 2 cut(s) 94, 209
BssECI CCNNGG 3 cut(s) 84, 219, 452
BssMI GATC 2 cut(s) 289, 560
BssNI GRCGYC 1 cut(s) 98
BssT1I CCWWGG 3 cut(s) 84, 219, 452
Bst2UI CCWGG 6 cut(s) 29, 65, 137, 503, 647, 723
Bst4CI ACNGT 3 cut(s) 392, 473, 588
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 7, 56
BstDEI CTNAG 3 cut(s) 50, 72, 102
BstDSI CCRYGG 2 cut(s) 219, 452
BstENI CCTNNNNNAGG 1 cut(s) 644
BstF5I GGATG 3 cut(s) 164, 583, 679
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 2 cut(s) 292, 563
BstMAI GTCTC 3 cut(s) 105, 123, 346
BstMBI GATC 2 cut(s) 289, 560
BstMWI GCNNNNNNNGC 2 cut(s) 76, 95
BstNI CCWGG 6 cut(s) 29, 65, 137, 503, 647, 723
BstNSI RCATGY 1 cut(s) 549
BstSCI CCNGG 7 cut(s) 27, 63, 135, 501, 645, 682, 721
BstSFI CTRYAG 1 cut(s) 280
BstSLI GKGCMC 1 cut(s) 640
BstV1I GCAGC 5 cut(s) 168, 210, 297, 473, 611
BsuRI GGCC 7 cut(s) 89, 135, 209, 225, 264, 596, 741
BtgI CCRYGG 2 cut(s) 219, 452
BtsCI GGATG 3 cut(s) 164, 583, 679
BtsIMutI CAGTG 3 cut(s) 239, 388, 593
BveI ACCTGC 1 cut(s) 660
Cac8I GCNNGC 2 cut(s) 7, 56
CfoI GCGC 1 cut(s) 486
Cfr10I RCCGGY 2 cut(s) 94, 209
Cfr13I GGNCC 6 cut(s) 133, 168, 223, 244, 661, 739
CseI GACGC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 474
CviAII CATG 4 cut(s) 220, 453, 546, 736
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 3 cut(s) 50, 72, 102
DpnI GATC 2 cut(s) 291, 562
DpnII GATC 2 cut(s) 289, 560
DriI GACNNNNNGTC 1 cut(s) 115
EaeI YGGCCR 2 cut(s) 207, 262
Eam1104I CTCTTC 1 cut(s) 51
Eam1105I GACNNNNNGTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 375
Eco130I CCWWGG 3 cut(s) 84, 219, 452
Eco147I AGGCCT 1 cut(s) 596
Eco24I GRGCYC 3 cut(s) 44, 219, 377
Eco47I GGWCC 3 cut(s) 168, 244, 661
Eco53kI GAGCTC 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 375
EcoNI CCTNNNNNAGG 1 cut(s) 644
EcoRII CCWGG 6 cut(s) 27, 63, 135, 501, 645, 721
EcoT14I CCWWGG 3 cut(s) 84, 219, 452
EcoT38I GRGCYC 3 cut(s) 44, 219, 377
ErhI CCWWGG 3 cut(s) 84, 219, 452
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 4 cut(s) 223, 456, 549, 739
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 1 cut(s) 251
FatI CATG 4 cut(s) 219, 452, 545, 735
FauI CCCGC 1 cut(s) 155
Fnu4HI GCNGC 7 cut(s) 90, 148, 182, 199, 286, 462, 625
FokI GGATG 3 cut(s) 171, 590, 666
FriOI GRGCYC 3 cut(s) 44, 219, 377
Fsp4HI GCNGC 7 cut(s) 90, 148, 182, 199, 286, 462, 625
GlaI GCGC 1 cut(s) 485
GluI GCNGC 7 cut(s) 90, 148, 182, 199, 286, 462, 625
GsuI CTGGAG 2 cut(s) 485, 744
HaeIII GGCC 7 cut(s) 89, 135, 209, 225, 264, 596, 741
HapII CCGG 5 cut(s) 95, 210, 226, 265, 684
HgaI GACGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 486
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 4 cut(s) 223, 456, 549, 739
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HincII GTYRAC 2 cut(s) 142, 189
HindII GTYRAC 2 cut(s) 142, 189
HindIII AAGCTT 1 cut(s) 747
HinfI GANTC 5 cut(s) 35, 190, 239, 613, 715
HpaII CCGG 5 cut(s) 95, 210, 226, 265, 684
HphI GGTGA 2 cut(s) 224, 622
Hpy166II GTNNAC 3 cut(s) 142, 168, 189
Hpy188I TCNGA 4 cut(s) 51, 105, 129, 244
Hpy188III TCNNGA 2 cut(s) 293, 656
Hpy8I GTNNAC 3 cut(s) 142, 168, 189
Hpy99I CGWCG 2 cut(s) 113, 669
HpyAV CCTTC 4 cut(s) 257, 314, 607, 644
HpyCH4III ACNGT 3 cut(s) 392, 473, 588
HpyCH4V TGCA 3 cut(s) 383, 449, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 95
HpyF3I CTNAG 3 cut(s) 50, 72, 102
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 4 cut(s) 223, 456, 549, 739
HspAI GCGC 1 cut(s) 484
Kzo9I GATC 2 cut(s) 289, 560
LmnI GCTCC 4 cut(s) 67, 228, 325, 372
Lsp1109I GCAGC 5 cut(s) 168, 210, 297, 473, 611
LweI GCATC 2 cut(s) 149, 392
MaeIII GTNAC 2 cut(s) 467, 610
MalI GATC 2 cut(s) 291, 562
MboI GATC 2 cut(s) 289, 560
MboII GAAGA 3 cut(s) 38, 351, 354
MhlI GDGCHC 4 cut(s) 44, 219, 377, 640
MluCI AATT 2 cut(s) 59, 417
MlyI GAGTC 3 cut(s) 184, 233, 607
MnlI CCTC 9 cut(s) 25, 54, 509, 568, 574, 586, 652, 687, 729
MseI TTAA 2 cut(s) 416, 690
MslI CAYNNNNRTG 2 cut(s) 550, 633
MspI CCGG 5 cut(s) 95, 210, 226, 265, 684
MspR9I CCNGG 7 cut(s) 29, 65, 137, 503, 647, 684, 723
MvaI CCWGG 6 cut(s) 29, 65, 137, 503, 647, 723
MwoI GCNNNNNNNGC 2 cut(s) 76, 95
NciI CCSGG 1 cut(s) 684
NcoI CCATGG 2 cut(s) 219, 452
NdeII GATC 2 cut(s) 289, 560
NlaIII CATG 4 cut(s) 223, 456, 549, 739
NlaIV GGNNCC 4 cut(s) 69, 230, 321, 340
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 610
NspI RCATGY 1 cut(s) 549
PceI AGGCCT 1 cut(s) 596
PcsI WCGNNNNNNNCGW 1 cut(s) 661
PfeI GAWTC 2 cut(s) 35, 715
PfoI TCCNGGA 3 cut(s) 27, 63, 721
PkrI GCNGC 7 cut(s) 91, 149, 183, 200, 287, 463, 626
PleI GAGTC 3 cut(s) 184, 233, 607
PpsI GAGTC 3 cut(s) 184, 233, 607
Psp124BI GAGCTC 1 cut(s) 377
Psp6I CCWGG 6 cut(s) 27, 63, 135, 501, 645, 721
PspGI CCWGG 6 cut(s) 27, 63, 135, 501, 645, 721
PspN4I GGNNCC 4 cut(s) 69, 230, 321, 340
PspPI GGNCC 6 cut(s) 133, 168, 223, 244, 661, 739
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
RseI CAYNNNNRTG 2 cut(s) 550, 633
SacI GAGCTC 1 cut(s) 377
SaqAI TTAA 2 cut(s) 416, 690
SatI GCNGC 7 cut(s) 90, 148, 182, 199, 286, 462, 625
Sau3AI GATC 2 cut(s) 289, 560
Sau96I GGNCC 6 cut(s) 133, 168, 223, 244, 661, 739
SchI GAGTC 3 cut(s) 184, 233, 607
ScrFI CCNGG 7 cut(s) 29, 65, 137, 503, 647, 684, 723
SduI GDGCHC 4 cut(s) 44, 219, 377, 640
SetI ASST 9 cut(s) 141, 249, 377, 466, 501, 655, 663, 674, 751
SfaNI GCATC 2 cut(s) 149, 392
SfcI CTRYAG 1 cut(s) 280
SgrAI CRCCGGYG 1 cut(s) 94
SinI GGWCC 3 cut(s) 168, 244, 661
SmiMI CAYNNNNRTG 2 cut(s) 550, 633
Sse9I AATT 2 cut(s) 59, 417
SseBI AGGCCT 1 cut(s) 596
SsiI CCGC 6 cut(s) 5, 90, 147, 150, 162, 171
SstI GAGCTC 1 cut(s) 377
StuI AGGCCT 1 cut(s) 596
StyD4I CCNGG 7 cut(s) 27, 63, 135, 501, 645, 682, 721
StyI CCWWGG 3 cut(s) 84, 219, 452
TaaI ACNGT 3 cut(s) 392, 473, 588
TaqI TCGA 1 cut(s) 38
TaqII GACCGA 1 cut(s) 122
TasI AATT 2 cut(s) 59, 417
TauI GCSGC 2 cut(s) 92, 150
TfiI GAWTC 2 cut(s) 35, 715
Tru1I TTAA 2 cut(s) 416, 690
Tru9I TTAA 2 cut(s) 416, 690
TscAI CASTG 3 cut(s) 239, 395, 593
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 5 cut(s) 181, 198, 285, 461, 624
Tsp45I GTSAC 1 cut(s) 610
TspGWI ACGGA 1 cut(s) 653
TspRI CASTG 3 cut(s) 239, 395, 593
VpaK11BI GGWCC 3 cut(s) 168, 244, 661
XagI CCTNNNNNAGG 1 cut(s) 644
XceI RCATGY 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.