Prupe.6G240600_v2.0.a1

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0009470
Physical Location & Seq
Forward (+)
23935558 .. 23938280
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G240600.1

Sequence Viewer

Length: 756 bp
ATGGCGATCAACAACAGGGAGAGCAACGTCCAAGAGGAATCGAACCCTCTTCTGAGCCAGCAATTCGAGGAGCCTCAGAAGGATGCTGAAAAGCCCGCCAAGGCCTCGCCGGAGACTCAGTCGCCGGAGAAATCTCAGGCAGAGATGGGCCATGTGAATGGCGGTGGTAATGGCTGCGGGTGGACCGCCGATGGGCTGCCGTTGGGGCACGGGAGCGTGATGGGTGAGCCCATGGGCCGGGCCCAGTGGGACTCCGGCCTTCTTGCATGTCTCGGCCGTAATGATGATTTCTGTAGCAGCGATCTTGAAGTTTGCCTTCTTGGAAGTGTGGCTCCTTGTGTGTTGTATGGAAGCAATGTTGAGAGACTTGGATCTACTCCTGGGACGTTTGCAAATCACTGTTTGTCTTACTATGGTCTATATCTGATTGGTAATACCTTTTTTGGTTGGAACTGCCTTGCACCATGGTTTTCATATCCTAGCCGTACTGCTATCCGCCGGAAGTTCAACCTAGAGGGTAGCTGTGAGGCGCTTCATAGGTCATGTGGATGCTGTGGCAGCTTTGTGGAAGATGAGGTACAACAAGAACAGTGTGAGACCGCCTGTGATTTTGCGACTCATGTTTTCTGCCATGCATGCGCCCTTTGTCAGGAAGGTCGTGAGATCCGTCGCAGGATGCTTCATCCTGGTTTCAATGCTCAACCAGTTCTGGTTATGATTCCTCCTGGGGAGCAGGCCATGGGCCGTGGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

252

Amino Acids

27.25

Weight (kDa)

5.07

Isoelectric Point (pI)

57.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 96, 162, 177, 186, 496, 600
AclWI GGATC 2 cut(s) 379, 658
AcoI YGGCCR 1 cut(s) 274
AfaI GTAC 2 cut(s) 487, 579
AfiI CCNNNNNNNGG 3 cut(s) 192, 237, 649
AgsI TTSAA 3 cut(s) 308, 508, 694
AjnI CCWGG 3 cut(s) 379, 685, 724
AluBI AGCT 3 cut(s) 522, 561, 752
AluI AGCT 3 cut(s) 522, 561, 752
Alw26I GTCTC 4 cut(s) 107, 275, 358, 590
AlwI GGATC 2 cut(s) 379, 658
AoxI GGCC 8 cut(s) 102, 148, 235, 240, 256, 274, 735, 742
ApaI GGGCCC 1 cut(s) 244
ApeKI GCWGC 4 cut(s) 174, 196, 297, 558
AspLEI GCGC 2 cut(s) 532, 641
AspS9I GGNCC 6 cut(s) 148, 183, 235, 240, 241, 742
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 1 cut(s) 183
BaeGI GKGCMC 2 cut(s) 210, 244
BanII GRGCYC 2 cut(s) 231, 244
BarI GAAGNNNNNNTAC 2 cut(s) 561, 593
BbvI GCAGC 4 cut(s) 161, 183, 309, 570
BccI CCATC 3 cut(s) 139, 185, 214
BceAI ACGGC 4 cut(s) 184, 261, 468, 729
BciT130I CCWGG 3 cut(s) 381, 687, 726
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 4 cut(s) 107, 275, 358, 590
BfaI CTAG 2 cut(s) 480, 512
BfmI CTRYAG 1 cut(s) 292
BfoI RGCGCY 1 cut(s) 533
BglI GCCNNNNNGGC 1 cut(s) 205
BisI GCNGC 4 cut(s) 175, 197, 298, 559
BlsI GCNGC 4 cut(s) 176, 198, 299, 560
Bme1390I CCNGG 4 cut(s) 239, 381, 687, 726
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 6 cut(s) 148, 183, 235, 240, 241, 742
BmiI GGNNCC 3 cut(s) 72, 242, 333
BmrFI CCNGG 4 cut(s) 239, 381, 687, 726
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 3 cut(s) 73, 539, 666
BmuI ACTGGG 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 590
BsaJI CCNNGG 7 cut(s) 99, 231, 380, 464, 725, 738, 745
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 237, 649
Bse1I ACTGG 2 cut(s) 244, 704
Bse3DI GCAATG 1 cut(s) 361
BseBI CCWGG 3 cut(s) 381, 687, 726
BseDI CCNNGG 7 cut(s) 99, 231, 380, 464, 725, 738, 745
BseGI GGATG 4 cut(s) 88, 554, 681, 682
BseLI CCNNNNNNNGG 3 cut(s) 192, 237, 649
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 4 cut(s) 44, 89, 131, 149
BseNI ACTGG 2 cut(s) 244, 704
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 2 cut(s) 210, 244
BseX3I CGGCCG 1 cut(s) 274
BseXI GCAGC 4 cut(s) 161, 183, 309, 570
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 8 cut(s) 104, 150, 237, 242, 258, 276, 737, 744
BsiEI CGRYCG 1 cut(s) 277
BsiSI CCGG 5 cut(s) 110, 125, 238, 255, 499
BslFI GGGAC 2 cut(s) 263, 397
BslI CCNNNNNNNGG 3 cut(s) 192, 237, 649
BsmAI GTCTC 4 cut(s) 107, 275, 358, 590
BsmFI GGGAC 2 cut(s) 263, 397
BsnI GGCC 8 cut(s) 104, 150, 237, 242, 258, 276, 737, 744
Bso31I GGTCTC 1 cut(s) 590
Bsp120I GGGCCC 1 cut(s) 240
Bsp1286I GDGCHC 3 cut(s) 210, 231, 244
Bsp143I GATC 4 cut(s) 6, 301, 371, 663
Bsp19I CCATGG 3 cut(s) 231, 464, 738
BspACI CCGC 6 cut(s) 96, 162, 177, 186, 496, 600
BspANI GGCC 8 cut(s) 104, 150, 237, 242, 258, 276, 737, 744
BspCNI CTCAG 4 cut(s) 45, 88, 130, 148
BspLI GGNNCC 3 cut(s) 72, 242, 333
BspPI GGATC 2 cut(s) 379, 658
BspTNI GGTCTC 1 cut(s) 590
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 2 cut(s) 244, 704
BssECI CCNNGG 7 cut(s) 99, 231, 380, 464, 725, 738, 745
BssMI GATC 4 cut(s) 6, 301, 371, 663
BssT1I CCWWGG 4 cut(s) 99, 231, 464, 738
Bst2UI CCWGG 3 cut(s) 381, 687, 726
Bst4CI ACNGT 2 cut(s) 401, 591
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 4 cut(s) 59, 96, 637, 735
BstDEI CTNAG 4 cut(s) 53, 75, 117, 135
BstDSI CCRYGG 4 cut(s) 231, 464, 738, 745
BstENI CCTNNNNNAGG 1 cut(s) 647
BstF5I GGATG 4 cut(s) 88, 554, 681, 682
BstH2I RGCGCY 1 cut(s) 533
BstHHI GCGC 2 cut(s) 532, 641
BstKTI GATC 4 cut(s) 9, 304, 374, 666
BstMAI GTCTC 4 cut(s) 107, 275, 358, 590
BstMBI GATC 4 cut(s) 6, 301, 371, 663
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 3 cut(s) 205, 558, 636
BstNI CCWGG 3 cut(s) 381, 687, 726
BstNSI RCATGY 2 cut(s) 270, 639
BstSCI CCNGG 4 cut(s) 237, 379, 685, 724
BstSFI CTRYAG 1 cut(s) 292
BstSLI GKGCMC 2 cut(s) 210, 244
BstV1I GCAGC 4 cut(s) 161, 183, 309, 570
BstX2I RGATCY 2 cut(s) 371, 663
BstXI CCANNNNNNTGG 1 cut(s) 158
BstYI RGATCY 2 cut(s) 371, 663
BstZI CGGCCG 1 cut(s) 274
BsuRI GGCC 8 cut(s) 104, 150, 237, 242, 258, 276, 737, 744
BtgI CCRYGG 4 cut(s) 231, 464, 738, 745
BtsCI GGATG 4 cut(s) 88, 554, 681, 682
BtsIMutI CAGTG 3 cut(s) 251, 397, 596
Cac8I GCNNGC 4 cut(s) 59, 96, 637, 735
CfoI GCGC 2 cut(s) 532, 641
Cfr13I GGNCC 6 cut(s) 148, 183, 235, 240, 241, 742
Csp6I GTAC 2 cut(s) 486, 578
CviAII CATG 9 cut(s) 152, 232, 267, 465, 543, 620, 632, 636, 739
CviQI GTAC 2 cut(s) 486, 578
DdeI CTNAG 4 cut(s) 53, 75, 117, 135
DpnI GATC 4 cut(s) 8, 303, 373, 665
DpnII GATC 4 cut(s) 6, 301, 371, 663
EaeI YGGCCR 1 cut(s) 274
EagI CGGCCG 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
EciI GGCGGA 1 cut(s) 485
EclXI CGGCCG 1 cut(s) 274
Eco130I CCWWGG 4 cut(s) 99, 231, 464, 738
Eco147I AGGCCT 1 cut(s) 104
Eco24I GRGCYC 2 cut(s) 231, 244
Eco31I GGTCTC 1 cut(s) 590
Eco47I GGWCC 1 cut(s) 183
Eco52I CGGCCG 1 cut(s) 274
EcoNI CCTNNNNNAGG 1 cut(s) 647
EcoRII CCWGG 3 cut(s) 379, 685, 724
EcoT14I CCWWGG 4 cut(s) 99, 231, 464, 738
EcoT22I ATGCAT 1 cut(s) 637
EcoT38I GRGCYC 2 cut(s) 231, 244
ErhI CCWWGG 4 cut(s) 99, 231, 464, 738
FaeI CATG 9 cut(s) 155, 235, 270, 468, 546, 623, 635, 639, 742
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 2 cut(s) 263, 397
FatI CATG 9 cut(s) 151, 231, 266, 464, 542, 619, 631, 635, 738
FauI CCCGC 2 cut(s) 103, 170
Fnu4HI GCNGC 4 cut(s) 175, 197, 298, 559
FokI GGATG 4 cut(s) 95, 561, 669, 688
FriOI GRGCYC 2 cut(s) 231, 244
Fsp4HI GCNGC 4 cut(s) 175, 197, 298, 559
FspBI CTAG 2 cut(s) 480, 512
GlaI GCGC 2 cut(s) 531, 640
GluI GCNGC 4 cut(s) 175, 197, 298, 559
HaeII RGCGCY 1 cut(s) 533
HaeIII GGCC 8 cut(s) 104, 150, 237, 242, 258, 276, 737, 744
HapII CCGG 5 cut(s) 110, 125, 238, 255, 499
HhaI GCGC 2 cut(s) 532, 641
Hin1II CATG 9 cut(s) 155, 235, 270, 468, 546, 623, 635, 639, 742
Hin6I GCGC 2 cut(s) 530, 639
HinP1I GCGC 2 cut(s) 530, 639
HinfI GANTC 5 cut(s) 38, 115, 251, 616, 718
HpaII CCGG 5 cut(s) 110, 125, 238, 255, 499
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 3 cut(s) 54, 78, 426
Hpy188III TCNNGA 3 cut(s) 305, 650, 659
Hpy8I GTNNAC 1 cut(s) 183
Hpy99I CGWCG 1 cut(s) 672
HpyAV CCTTC 4 cut(s) 73, 269, 326, 647
HpyCH4III ACNGT 2 cut(s) 401, 591
HpyCH4IV ACGT 2 cut(s) 27, 386
HpyCH4V TGCA 4 cut(s) 266, 392, 461, 635
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 558, 636
HpyF3I CTNAG 4 cut(s) 53, 75, 117, 135
HpySE526I ACGT 2 cut(s) 27, 386
Hsp92II CATG 9 cut(s) 155, 235, 270, 468, 546, 623, 635, 639, 742
HspAI GCGC 2 cut(s) 530, 639
Kzo9I GATC 4 cut(s) 6, 301, 371, 663
LmnI GCTCC 5 cut(s) 70, 213, 337, 730, 749
Lsp1109I GCAGC 4 cut(s) 161, 183, 309, 570
LweI GCATC 3 cut(s) 73, 539, 666
MaeI CTAG 2 cut(s) 480, 512
MaeII ACGT 2 cut(s) 27, 386
MalI GATC 4 cut(s) 8, 303, 373, 665
MboI GATC 4 cut(s) 6, 301, 371, 663
MboII GAAGA 2 cut(s) 41, 581
MflI RGATCY 2 cut(s) 371, 663
MhlI GDGCHC 3 cut(s) 210, 231, 244
MluCI AATT 1 cut(s) 62
MlyI GAGTC 3 cut(s) 109, 245, 610
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 9 cut(s) 28, 57, 61, 84, 115, 508, 520, 568, 732
Mph1103I ATGCAT 1 cut(s) 637
MslI CAYNNNNRTG 2 cut(s) 156, 547
MspI CCGG 5 cut(s) 110, 125, 238, 255, 499
MspR9I CCNGG 4 cut(s) 239, 381, 687, 726
MvaI CCWGG 3 cut(s) 381, 687, 726
MwoI GCNNNNNNNGC 3 cut(s) 205, 558, 636
NciI CCSGG 1 cut(s) 239
NcoI CCATGG 3 cut(s) 231, 464, 738
NdeII GATC 4 cut(s) 6, 301, 371, 663
NlaIII CATG 9 cut(s) 155, 235, 270, 468, 546, 623, 635, 639, 742
NlaIV GGNNCC 3 cut(s) 72, 242, 333
NmeAIII GCCGAG 1 cut(s) 252
NsiI ATGCAT 1 cut(s) 637
NspI RCATGY 2 cut(s) 270, 639
PaeI GCATGC 1 cut(s) 639
PceI AGGCCT 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 664
PfeI GAWTC 2 cut(s) 38, 718
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 4 cut(s) 176, 198, 299, 560
PleI GAGTC 3 cut(s) 109, 245, 610
PpsI GAGTC 3 cut(s) 109, 245, 610
Psp6I CCWGG 3 cut(s) 379, 685, 724
PspGI CCWGG 3 cut(s) 379, 685, 724
PspN4I GGNNCC 3 cut(s) 72, 242, 333
PspOMI GGGCCC 1 cut(s) 240
PspPI GGNCC 6 cut(s) 148, 183, 235, 240, 241, 742
PsuI RGATCY 2 cut(s) 371, 663
PsyI GACNNNGTC 1 cut(s) 118
RsaI GTAC 2 cut(s) 487, 579
RsaNI GTAC 2 cut(s) 486, 578
RseI CAYNNNNRTG 2 cut(s) 156, 547
SatI GCNGC 4 cut(s) 175, 197, 298, 559
Sau3AI GATC 4 cut(s) 6, 301, 371, 663
Sau96I GGNCC 6 cut(s) 148, 183, 235, 240, 241, 742
SchI GAGTC 3 cut(s) 109, 245, 610
ScrFI CCNGG 4 cut(s) 239, 381, 687, 726
SduI GDGCHC 3 cut(s) 210, 231, 244
SfaNI GCATC 3 cut(s) 73, 539, 666
SfcI CTRYAG 1 cut(s) 292
SinI GGWCC 1 cut(s) 183
SmiMI CAYNNNNRTG 2 cut(s) 156, 547
SphI GCATGC 1 cut(s) 639
Sse9I AATT 1 cut(s) 62
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 6 cut(s) 96, 162, 177, 186, 496, 600
SspMI CTAG 2 cut(s) 480, 512
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 4 cut(s) 237, 379, 685, 724
StyI CCWWGG 4 cut(s) 99, 231, 464, 738
TaaI ACNGT 2 cut(s) 401, 591
TaiI ACGT 2 cut(s) 30, 389
TaqI TCGA 2 cut(s) 41, 66
TasI AATT 1 cut(s) 62
TfiI GAWTC 2 cut(s) 38, 718
TscAI CASTG 3 cut(s) 251, 404, 596
TseI GCWGC 4 cut(s) 174, 196, 297, 558
TspDTI ATGAA 3 cut(s) 462, 524, 671
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 3 cut(s) 251, 404, 596
Tth111I GACNNNGTC 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 183
XagI CCTNNNNNAGG 1 cut(s) 647
XceI RCATGY 2 cut(s) 270, 639
XspI CTAG 2 cut(s) 480, 512
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.