Rw0G014570

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00652
OG0009470
Physical Location & Seq
Reverse (-)
19347 .. 25707
6361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014570.1

Sequence Viewer

Length: 714 bp
ATGGAGGGCAACAGGGAGAGCAATGTCCAGGAGGAATCGAGCCCTCTTCTGAGCCAGCAATTCCAGGAGCCTGAGAAGTCGTCCAAGGCCGCGTCGGCGGCTCAAACCGACGAGAAGTCTCCCGTTCAGATGGGCCAGGTCAATGGCTGCTGTAATGGATGCTGGTGGACCACCGATGGGCTACCCAGCGTGGTGGTCGGTGAGCCCATGGGCCGGAGCCAGTGGGACTCGGACCTTCTTGCCTGTCTTGGCCGCAACGATGAGTTCTGTAGCAGTGATCTTGAAGTTTGCCTTCTTGGAAGTGTGGCTCCTTGTGTGTTGTATGGAACCACTGCCGAGAGACTTTCTTCTTCTATGGGGAGCTCGTTTGCATCTCACTGTTTGACTTACTCTGGTCTATATTTAATTGGATATGCCTTTGGTTTGAACTGCCTTGCACCATGGTTTGCAGCTCGTAACCGTACTGCTATGCGCCACAAGTTCAACCTCCAGGGTGGCTGTGAAGCATATAGGTGCTGCGGATCAATGGGAGATGAGGATGAGGAACAGTGTGAGGCCTTCTGTGATGTTGTGACTCATTTGTGCTGCCATCAATGTGCCCTTTGCCAGGAAGGTCGTGAGGTCCGTCGAAGGTTGCCTCATCCCGGTTTTAGTGCTCAACCCGTTCTGGTTATGATTCCTCCTGGAGAGCAAGGCATGGGCCGTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

237

Amino Acids

25.77

Weight (kDa)

4.82

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 75 - 207 1.4e-17 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 92
AciI CCGC 4 cut(s) 90, 98, 253, 519
AclWI GGATC 1 cut(s) 529
AcoI YGGCCR 1 cut(s) 250
AfaI GTAC 1 cut(s) 463
AfiI CCNNNNNNNGG 4 cut(s) 177, 213, 607, 644
AgsI TTSAA 3 cut(s) 284, 427, 484
AhdI GACNNNNNGTC 1 cut(s) 115
AjnI CCWGG 6 cut(s) 27, 63, 135, 489, 606, 682
AluBI AGCT 3 cut(s) 363, 452, 710
AluI AGCT 3 cut(s) 363, 452, 710
Alw21I GWGCWC 2 cut(s) 365, 658
Alw26I GTCTC 2 cut(s) 123, 334
AlwI GGATC 1 cut(s) 529
AoxI GGCC 6 cut(s) 87, 133, 211, 250, 555, 700
ApeKI GCWGC 4 cut(s) 147, 449, 516, 585
AspLEI GCGC 1 cut(s) 474
AspS9I GGNCC 6 cut(s) 133, 168, 211, 232, 622, 700
AsuC2I CCSGG 1 cut(s) 645
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 3 cut(s) 168, 232, 622
BaeGI GKGCMC 1 cut(s) 601
BanII GRGCYC 3 cut(s) 44, 207, 365
Bbv12I GWGCWC 2 cut(s) 365, 658
BbvI GCAGC 4 cut(s) 134, 461, 503, 572
BccI CCATC 3 cut(s) 124, 170, 597
BceAI ACGGC 1 cut(s) 687
BciT130I CCWGG 6 cut(s) 29, 65, 137, 491, 608, 684
BcnI CCSGG 1 cut(s) 645
BcoDI GTCTC 2 cut(s) 123, 334
BfmI CTRYAG 1 cut(s) 268
BglI GCCNNNNNGGC 1 cut(s) 95
BisI GCNGC 7 cut(s) 90, 99, 148, 253, 450, 517, 586
BlsI GCNGC 7 cut(s) 91, 100, 149, 254, 451, 518, 587
Bme1390I CCNGG 7 cut(s) 29, 65, 137, 491, 608, 645, 684
Bme18I GGWCC 3 cut(s) 168, 232, 622
BmeRI GACNNNNNGTC 1 cut(s) 115
BmgT120I GGNCC 6 cut(s) 133, 168, 211, 232, 622, 700
BmiI GGNNCC 4 cut(s) 69, 218, 309, 328
BmrFI CCNGG 7 cut(s) 29, 65, 137, 491, 608, 645, 684
BmsI GCATC 2 cut(s) 149, 380
BpmI CTGGAG 2 cut(s) 473, 705
BpuMI CCSGG 1 cut(s) 645
BsaJI CCNNGG 4 cut(s) 84, 207, 440, 490
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 213, 607, 644
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 28
BseBI CCWGG 6 cut(s) 29, 65, 137, 491, 608, 684
BseDI CCNNGG 4 cut(s) 84, 207, 440, 490
BseGI GGATG 3 cut(s) 164, 544, 640
BseLI CCNNNNNNNGG 4 cut(s) 177, 213, 607, 644
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 2 cut(s) 41, 63
BseNI ACTGG 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 601
BseXI GCAGC 4 cut(s) 134, 461, 503, 572
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 6 cut(s) 89, 135, 213, 252, 557, 702
BsiHKAI GWGCWC 2 cut(s) 365, 658
BsiSI CCGG 2 cut(s) 214, 645
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 4 cut(s) 177, 213, 607, 644
BsmAI GTCTC 2 cut(s) 123, 334
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 6 cut(s) 89, 135, 213, 252, 557, 702
Bsp1286I GDGCHC 5 cut(s) 44, 207, 365, 601, 658
Bsp143I GATC 2 cut(s) 277, 521
Bsp19I CCATGG 2 cut(s) 207, 440
BspACI CCGC 4 cut(s) 90, 98, 253, 519
BspANI GGCC 6 cut(s) 89, 135, 213, 252, 557, 702
BspCNI CTCAG 2 cut(s) 42, 64
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 4 cut(s) 69, 218, 309, 328
BspPI GGATC 1 cut(s) 529
BsrDI GCAATG 1 cut(s) 28
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 4 cut(s) 84, 207, 440, 490
BssMI GATC 2 cut(s) 277, 521
BssT1I CCWWGG 3 cut(s) 84, 207, 440
Bst2UI CCWGG 6 cut(s) 29, 65, 137, 491, 608, 684
Bst4CI ACNGT 3 cut(s) 380, 461, 549
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 2 cut(s) 50, 72
BstDSI CCRYGG 2 cut(s) 207, 440
BstENI CCTNNNNNAGG 1 cut(s) 605
BstF5I GGATG 3 cut(s) 164, 544, 640
BstFNI CGCG 1 cut(s) 92
BstHHI GCGC 1 cut(s) 474
BstKTI GATC 2 cut(s) 280, 524
BstMAI GTCTC 2 cut(s) 123, 334
BstMBI GATC 2 cut(s) 277, 521
BstMWI GCNNNNNNNGC 2 cut(s) 95, 98
BstNI CCWGG 6 cut(s) 29, 65, 137, 491, 608, 684
BstSCI CCNGG 7 cut(s) 27, 63, 135, 489, 606, 643, 682
BstSFI CTRYAG 1 cut(s) 268
BstSLI GKGCMC 1 cut(s) 601
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 4 cut(s) 134, 461, 503, 572
BstXI CCANNNNNNTGG 2 cut(s) 143, 193
BsuRI GGCC 6 cut(s) 89, 135, 213, 252, 557, 702
BtgI CCRYGG 2 cut(s) 207, 440
BtsCI GGATG 3 cut(s) 164, 544, 640
BtsI GCAGTG 2 cut(s) 280, 330
BtsIMutI CAGTG 5 cut(s) 227, 280, 330, 376, 554
Cac8I GCNNGC 1 cut(s) 56
CfoI GCGC 1 cut(s) 474
Cfr13I GGNCC 6 cut(s) 133, 168, 211, 232, 622, 700
CseI GACGC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 462
CviAII CATG 3 cut(s) 208, 441, 697
CviQI GTAC 1 cut(s) 462
DdeI CTNAG 2 cut(s) 50, 72
DpnI GATC 2 cut(s) 279, 523
DpnII GATC 2 cut(s) 277, 521
DriI GACNNNNNGTC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 51
Eam1105I GACNNNNNGTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 363
Eco130I CCWWGG 3 cut(s) 84, 207, 440
Eco147I AGGCCT 1 cut(s) 557
Eco24I GRGCYC 3 cut(s) 44, 207, 365
Eco47I GGWCC 3 cut(s) 168, 232, 622
Eco53kI GAGCTC 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 363
EcoNI CCTNNNNNAGG 1 cut(s) 605
EcoRII CCWGG 6 cut(s) 27, 63, 135, 489, 606, 682
EcoT14I CCWWGG 3 cut(s) 84, 207, 440
EcoT38I GRGCYC 3 cut(s) 44, 207, 365
ErhI CCWWGG 3 cut(s) 84, 207, 440
FaeI CATG 3 cut(s) 211, 444, 700
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 1 cut(s) 239
FatI CATG 3 cut(s) 207, 440, 696
Fnu4HI GCNGC 7 cut(s) 90, 99, 148, 253, 450, 517, 586
FokI GGATG 3 cut(s) 171, 551, 627
FriOI GRGCYC 3 cut(s) 44, 207, 365
Fsp4HI GCNGC 7 cut(s) 90, 99, 148, 253, 450, 517, 586
GlaI GCGC 1 cut(s) 473
GluI GCNGC 7 cut(s) 90, 99, 148, 253, 450, 517, 586
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 2 cut(s) 473, 705
HaeIII GGCC 6 cut(s) 89, 135, 213, 252, 557, 702
HapII CCGG 2 cut(s) 214, 645
HgaI GACGC 1 cut(s) 81
HhaI GCGC 1 cut(s) 474
Hin1II CATG 3 cut(s) 211, 444, 700
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HindIII AAGCTT 1 cut(s) 708
HinfI GANTC 4 cut(s) 35, 227, 574, 676
HpaII CCGG 2 cut(s) 214, 645
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 3 cut(s) 51, 129, 232
Hpy188III TCNNGA 2 cut(s) 281, 617
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 3 cut(s) 97, 113, 630
HpyAV CCTTC 5 cut(s) 245, 302, 568, 605, 624
HpyCH4III ACNGT 3 cut(s) 380, 461, 549
HpyCH4V TGCA 3 cut(s) 371, 437, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 98
HpyF3I CTNAG 2 cut(s) 50, 72
Hsp92II CATG 3 cut(s) 211, 444, 700
HspAI GCGC 1 cut(s) 472
Kzo9I GATC 2 cut(s) 277, 521
LmnI GCTCC 4 cut(s) 67, 216, 313, 360
Lsp1109I GCAGC 4 cut(s) 134, 461, 503, 572
LweI GCATC 2 cut(s) 149, 380
MaeIII GTNAC 2 cut(s) 455, 571
MalI GATC 2 cut(s) 279, 523
MboI GATC 2 cut(s) 277, 521
MboII GAAGA 3 cut(s) 38, 339, 342
MhlI GDGCHC 5 cut(s) 44, 207, 365, 601, 658
MluCI AATT 2 cut(s) 59, 405
MlyI GAGTC 2 cut(s) 221, 568
MnlI CCTC 9 cut(s) 25, 54, 497, 529, 535, 547, 613, 648, 690
MseI TTAA 1 cut(s) 404
MslI CAYNNNNRTG 2 cut(s) 511, 594
MspI CCGG 2 cut(s) 214, 645
MspR9I CCNGG 7 cut(s) 29, 65, 137, 491, 608, 645, 684
MvaI CCWGG 6 cut(s) 29, 65, 137, 491, 608, 684
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 95, 98
NciI CCSGG 1 cut(s) 645
NcoI CCATGG 2 cut(s) 207, 440
NdeII GATC 2 cut(s) 277, 521
NlaIII CATG 3 cut(s) 211, 444, 700
NlaIV GGNNCC 4 cut(s) 69, 218, 309, 328
NmeAIII GCCGAG 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 571
PceI AGGCCT 1 cut(s) 557
PcsI WCGNNNNNNNCGW 1 cut(s) 622
PfeI GAWTC 2 cut(s) 35, 676
PfoI TCCNGGA 3 cut(s) 27, 63, 682
PkrI GCNGC 7 cut(s) 91, 100, 149, 254, 451, 518, 587
PleI GAGTC 2 cut(s) 221, 568
PpsI GAGTC 2 cut(s) 221, 568
Psp124BI GAGCTC 1 cut(s) 365
Psp6I CCWGG 6 cut(s) 27, 63, 135, 489, 606, 682
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 6 cut(s) 27, 63, 135, 489, 606, 682
PspN4I GGNNCC 4 cut(s) 69, 218, 309, 328
PspPI GGNCC 6 cut(s) 133, 168, 211, 232, 622, 700
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
RseI CAYNNNNRTG 2 cut(s) 511, 594
SacI GAGCTC 1 cut(s) 365
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 7 cut(s) 90, 99, 148, 253, 450, 517, 586
Sau3AI GATC 2 cut(s) 277, 521
Sau96I GGNCC 6 cut(s) 133, 168, 211, 232, 622, 700
SchI GAGTC 2 cut(s) 221, 568
ScrFI CCNGG 7 cut(s) 29, 65, 137, 491, 608, 645, 684
SduI GDGCHC 5 cut(s) 44, 207, 365, 601, 658
SfaNI GCATC 2 cut(s) 149, 380
SfcI CTRYAG 1 cut(s) 268
SinI GGWCC 3 cut(s) 168, 232, 622
SmiMI CAYNNNNRTG 2 cut(s) 511, 594
Sse9I AATT 2 cut(s) 59, 405
SseBI AGGCCT 1 cut(s) 557
SsiI CCGC 4 cut(s) 90, 98, 253, 519
SstI GAGCTC 1 cut(s) 365
StuI AGGCCT 1 cut(s) 557
StyD4I CCNGG 7 cut(s) 27, 63, 135, 489, 606, 643, 682
StyI CCWWGG 3 cut(s) 84, 207, 440
TaaI ACNGT 3 cut(s) 380, 461, 549
TaqI TCGA 2 cut(s) 38, 628
TasI AATT 2 cut(s) 59, 405
TauI GCSGC 3 cut(s) 92, 101, 255
TfiI GAWTC 2 cut(s) 35, 676
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TscAI CASTG 5 cut(s) 227, 280, 337, 383, 554
TseFI GTSAC 1 cut(s) 571
TseI GCWGC 4 cut(s) 147, 449, 516, 585
Tsp45I GTSAC 1 cut(s) 571
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 5 cut(s) 227, 280, 337, 383, 554
VpaK11BI GGWCC 3 cut(s) 168, 232, 622
XagI CCTNNNNNAGG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.