Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009470

Physical Location & Seq

Genomic Coordinates Reverse (-)

14605975 .. 14607757

Gene Structure 1783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g12100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCGAGCAACAACAGGGAGAATAATGTCCAGGAGGAATCGAACCCGCTTCTGGGCAAGCAATTCGAGGAGACCCAGAATGATACTGAGAAGCCCGCCAAGGCCTCGCCGGAGACTCAGTCGCCGGAGAAATCTCCCACGGAGATGGGGCATGTGAATGGCGGTGGTAATGGGTGCGCGTGGACCGCCGATGGGCTGCCGTTGGGGCACGGGAGCGTGATGGGTGAGCCCATGGGCCGGGCCCAGTGGGACTCCAGCCTCCTTGCCTGTCTTGGCCGCAATGATGAATTCTGTAGCAGCGATCTTGAAGTTTGTCTTCTTGGAAGTGTGGCTCCTTGTGTGTTGTATGGAAGTAATGCTGAGAGACTTGGATCTACTCCTGGGACGTTTGCAAATCACTGTTTGCCTTACTCTGGTCTATATCTGATTGGAAACACCTTTTTCGGTTGGAACTTCCTTGCACCGTGGTTTTCATATCCTAGCCGTACTGCCATCCGCCGCAAGTTCAACCTAGAGGCAAGGAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

177

Amino Acids

19.12

Weight (kDa)

5.2

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37110
fragaria_vesca	FvH4_6g15540 FvH4_6g15540
malus_domestica	MD04G1102200.v1.1 MD12G1121900.v1.1
prunus_persica	Prupe.6G240600_v2.0.a1 Prupe.6G240600_v2.0.a1
pyrus_communis	pycom04g09760 pycom12g12100
rosa_chinensis	RchiOBHm_Chr3g0469051
rosa_laevigata	RLG00000024388
rosa_multiflora	Rmu_sc0000326.1_g000003 Rmu_sc0007933.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412280
rosa_rugosa	Rorug03G0098800
rosa_samantha	Rh3AG148100 Rh3BG170900 Rh3DG204200
rosa_wichuraiana	Rw0G010950 Rw0G014570 Rw0G014600 Rw3G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	179
AciI	CCGC	7 cut(s)	47, 96, 162, 186, 277, 496, 499
AclWI	GGATC	1 cut(s)	379
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	5 cut(s)	52, 53, 192, 237, 413
AgsI	TTSAA	2 cut(s)	308, 508
AjnI	CCWGG	2 cut(s)	30, 379
Alw26I	GTCTC	3 cut(s)	65, 107, 358
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	4 cut(s)	102, 235, 240, 274
ApaI	GGGCCC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	196, 297
ApoI	RAATTY	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	4 cut(s)	183, 235, 240, 241
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	183
BaeGI	GKGCMC	2 cut(s)	210, 244
BanII	GRGCYC	2 cut(s)	231, 244
BbsI	GAAGAC	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	183, 309
BccI	CCATC	4 cut(s)	139, 185, 214, 500
BceAI	ACGGC	2 cut(s)	184, 468
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	2 cut(s)	32, 381
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	3 cut(s)	65, 107, 358
BfaI	CTAG	2 cut(s)	480, 512
BfmI	CTRYAG	1 cut(s)	292
BglI	GCCNNNNNGGC	1 cut(s)	205
BisI	GCNGC	4 cut(s)	197, 277, 298, 499
BlsI	GCNGC	4 cut(s)	198, 278, 299, 500
Bme1390I	CCNGG	3 cut(s)	32, 239, 381
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	4 cut(s)	183, 235, 240, 241
BmiI	GGNNCC	2 cut(s)	242, 333
BmrFI	CCNGG	3 cut(s)	32, 239, 381
BmrI	ACTGGG	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	5 cut(s)	99, 138, 231, 380, 464
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 53, 192, 237, 413
Bse1I	ACTGG	1 cut(s)	244
Bse3DI	GCAATG	1 cut(s)	286
BseBI	CCWGG	2 cut(s)	32, 381
BseDI	CCNNGG	5 cut(s)	99, 138, 231, 380, 464
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	5 cut(s)	52, 53, 192, 237, 413
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	3 cut(s)	78, 131, 351
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	2 cut(s)	210, 244
BseXI	GCAGC	2 cut(s)	183, 309
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	4 cut(s)	104, 237, 242, 276
BsiSI	CCGG	3 cut(s)	110, 125, 238
BslFI	GGGAC	2 cut(s)	263, 397
BslI	CCNNNNNNNGG	5 cut(s)	52, 53, 192, 237, 413
BsmAI	GTCTC	3 cut(s)	65, 107, 358
BsmFI	GGGAC	2 cut(s)	263, 397
BsnI	GGCC	4 cut(s)	104, 237, 242, 276
Bso31I	GGTCTC	1 cut(s)	65
Bsp120I	GGGCCC	1 cut(s)	240
Bsp1286I	GDGCHC	3 cut(s)	210, 231, 244
Bsp143I	GATC	2 cut(s)	301, 371
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	7 cut(s)	47, 96, 162, 186, 277, 496, 499
BspANI	GGCC	4 cut(s)	104, 237, 242, 276
BspCNI	CTCAG	3 cut(s)	79, 130, 352
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	242, 333
BspPI	GGATC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	5 cut(s)	99, 138, 231, 380, 464
BssMI	GATC	2 cut(s)	301, 371
BssT1I	CCWWGG	2 cut(s)	99, 231
Bst2UI	CCWGG	2 cut(s)	32, 381
Bst4CI	ACNGT	2 cut(s)	401, 465
BstC8I	GCNNGC	3 cut(s)	7, 59, 96
BstDEI	CTNAG	3 cut(s)	87, 117, 360
BstDSI	CCRYGG	3 cut(s)	138, 231, 464
BstF5I	GGATG	1 cut(s)	492
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	2 cut(s)	304, 374
BstMAI	GTCTC	3 cut(s)	65, 107, 358
BstMBI	GATC	2 cut(s)	301, 371
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 205
BstNI	CCWGG	2 cut(s)	32, 381
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	3 cut(s)	30, 237, 379
BstSFI	CTRYAG	1 cut(s)	292
BstSLI	GKGCMC	2 cut(s)	210, 244
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	183, 309
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	1 cut(s)	371
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	371
BsuRI	GGCC	4 cut(s)	104, 237, 242, 276
BtgI	CCRYGG	3 cut(s)	138, 231, 464
BtsCI	GGATG	1 cut(s)	492
BtsIMutI	CAGTG	2 cut(s)	251, 397
Cac8I	GCNNGC	3 cut(s)	7, 59, 96
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	4 cut(s)	183, 235, 240, 241
Csp6I	GTAC	1 cut(s)	486
CviAII	CATG	2 cut(s)	152, 232
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	3 cut(s)	87, 117, 360
DpnI	GATC	2 cut(s)	303, 373
DpnII	GATC	2 cut(s)	301, 371
EaeI	YGGCCR	1 cut(s)	274
EciI	GGCGGA	1 cut(s)	485
Eco130I	CCWWGG	2 cut(s)	99, 231
Eco147I	AGGCCT	1 cut(s)	104
Eco24I	GRGCYC	2 cut(s)	231, 244
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	30, 379
EcoT14I	CCWWGG	2 cut(s)	99, 231
EcoT38I	GRGCYC	2 cut(s)	231, 244
ErhI	CCWWGG	2 cut(s)	99, 231
FaeI	CATG	2 cut(s)	155, 235
FaiI	YATR	5 cut(s)	153, 233, 348, 421, 475
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	2 cut(s)	263, 397
FatI	CATG	2 cut(s)	151, 231
FauI	CCCGC	2 cut(s)	54, 103
Fnu4HI	GCNGC	4 cut(s)	197, 277, 298, 499
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	2 cut(s)	231, 244
Fsp4HI	GCNGC	4 cut(s)	197, 277, 298, 499
FspBI	CTAG	2 cut(s)	480, 512
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	4 cut(s)	197, 277, 298, 499
GsuI	CTGGAG	1 cut(s)	238
HaeIII	GGCC	4 cut(s)	104, 237, 242, 276
HapII	CCGG	3 cut(s)	110, 125, 238
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	155, 235
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	3 cut(s)	38, 115, 251
HpaII	CCGG	3 cut(s)	110, 125, 238
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	1 cut(s)	183
HpyCH4III	ACNGT	2 cut(s)	401, 465
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	2 cut(s)	392, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 205
HpyF3I	CTNAG	3 cut(s)	87, 117, 360
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	2 cut(s)	155, 235
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	301, 371
LmnI	GCTCC	2 cut(s)	213, 337
Lsp1109I	GCAGC	2 cut(s)	183, 309
MaeI	CTAG	2 cut(s)	480, 512
MaeII	ACGT	1 cut(s)	386
MalI	GATC	2 cut(s)	303, 373
MboI	GATC	2 cut(s)	301, 371
MboII	GAAGA	1 cut(s)	308
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	3 cut(s)	210, 231, 244
MluCI	AATT	2 cut(s)	62, 287
MlyI	GAGTC	2 cut(s)	109, 245
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	5 cut(s)	28, 61, 115, 269, 508
MslI	CAYNNNNRTG	2 cut(s)	143, 156
MspI	CCGG	3 cut(s)	110, 125, 238
MspR9I	CCNGG	3 cut(s)	32, 239, 381
MvaI	CCWGG	2 cut(s)	32, 381
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	185, 205
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	2 cut(s)	301, 371
NlaIII	CATG	2 cut(s)	155, 235
NlaIV	GGNNCC	2 cut(s)	242, 333
NspI	RCATGY	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	38
PflFI	GACNNNGTC	1 cut(s)	118
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	4 cut(s)	198, 278, 299, 500
PleI	GAGTC	2 cut(s)	109, 245
PpsI	GAGTC	2 cut(s)	109, 245
Psp6I	CCWGG	2 cut(s)	30, 379
PspGI	CCWGG	2 cut(s)	30, 379
PspN4I	GGNNCC	2 cut(s)	242, 333
PspOMI	GGGCCC	1 cut(s)	240
PspPI	GGNCC	4 cut(s)	183, 235, 240, 241
PsuI	RGATCY	1 cut(s)	371
PsyI	GACNNNGTC	1 cut(s)	118
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
RseI	CAYNNNNRTG	2 cut(s)	143, 156
SatI	GCNGC	4 cut(s)	197, 277, 298, 499
Sau3AI	GATC	2 cut(s)	301, 371
Sau96I	GGNCC	4 cut(s)	183, 235, 240, 241
SchI	GAGTC	2 cut(s)	109, 245
ScrFI	CCNGG	3 cut(s)	32, 239, 381
SduI	GDGCHC	3 cut(s)	210, 231, 244
SetI	ASST	3 cut(s)	389, 440, 513
SfcI	CTRYAG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	143, 156
Sse9I	AATT	2 cut(s)	62, 287
SseBI	AGGCCT	1 cut(s)	104
SsiI	CCGC	7 cut(s)	47, 96, 162, 186, 277, 496, 499
SspMI	CTAG	2 cut(s)	480, 512
StuI	AGGCCT	1 cut(s)	104
StyD4I	CCNGG	3 cut(s)	30, 237, 379
StyI	CCWWGG	2 cut(s)	99, 231
TaaI	ACNGT	2 cut(s)	401, 465
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	2 cut(s)	41, 66
TasI	AATT	2 cut(s)	62, 287
TauI	GCSGC	2 cut(s)	279, 501
TfiI	GAWTC	1 cut(s)	38
TscAI	CASTG	2 cut(s)	251, 404
TseI	GCWGC	2 cut(s)	196, 297
TspDTI	ATGAA	2 cut(s)	300, 462
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	251, 404
Tth111I	GACNNNGTC	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	155
XspI	CTAG	2 cut(s)	480, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.