Rh3DG204200

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0009470
Physical Location & Seq
Reverse (-)
18656640 .. 18659111
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG204200.1

Sequence Viewer

Length: 555 bp
ATGGCGGGCAACAGGGAGAGCAATGTCCAGGAGGAATCCAGCCCTCTTCTTCTGAGCCAGCAATTCCAGGAGCCTGAGAAGCCGGCCAAGGCCGCGCCGGCGGCTCAGACCGACGAGAAGTCTCCCGTTCAGATGGGGCAGGTCAACGGCGGCGGTAATGGATGCGGGTGGACCGCCGATGGGCTGCCGTTGACTCACGGCAGCGTGGTTGCCGGTGAGCCCATGGGCCGGAGCCAGTGGGACTCGGACCTTCTTGCCTGTCTTGGCCGCAACGATGAGTTCTGTAGCAGCGATCTTGAAGTTTGCCTTCTTGGAAGTGTGGCTCCTTGTGTGTTGTATGGAACCAATGCCGAGAGACTTTCTTCTTCTACGGGGAGCTCGTTTGCATCTCACTGTTTGACTTACTCTGGTCTATATTTAATTGGAAATGCCTTCTTTGGTTGGAACTGCCTGGCACCATGGTTTGCAGCTCGTAACCGTACTGCTATGCGCCACAAGTTCAACCTCCAGGCAAGTTATATTTTCCCTTTTGTGTGTGTGTTTATATTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

184

Amino Acids

19.8

Weight (kDa)

5.1

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 80 - 181 2.9e-12 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 553
Acc36I ACCTGC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 454
AccII CGCG 1 cut(s) 95
AciI CCGC 8 cut(s) 5, 93, 101, 150, 153, 165, 174, 268
AcoI YGGCCR 2 cut(s) 84, 265
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 2 cut(s) 180, 228
AgsI TTSAA 2 cut(s) 299, 502
AhdI GACNNNNNGTC 1 cut(s) 118
AjnI CCWGG 4 cut(s) 27, 66, 450, 507
AluBI AGCT 2 cut(s) 378, 470
AluI AGCT 2 cut(s) 378, 470
Alw21I GWGCWC 1 cut(s) 380
Alw26I GTCTC 2 cut(s) 126, 349
AoxI GGCC 4 cut(s) 84, 90, 226, 265
ApeKI GCWGC 4 cut(s) 184, 201, 288, 467
AspLEI GCGC 2 cut(s) 97, 492
AspS9I GGNCC 3 cut(s) 171, 226, 247
AsuHPI GGTGA 1 cut(s) 227
AvaII GGWCC 2 cut(s) 171, 247
BanI GGYRCC 1 cut(s) 454
BanII GRGCYC 2 cut(s) 222, 380
Bbv12I GWGCWC 1 cut(s) 380
BbvI GCAGC 4 cut(s) 171, 213, 300, 479
BccI CCATC 2 cut(s) 127, 173
BceAI ACGGC 3 cut(s) 163, 172, 214
BciT130I CCWGG 4 cut(s) 29, 68, 452, 509
BcoDI GTCTC 2 cut(s) 126, 349
BfmI CTRYAG 1 cut(s) 283
BfuAI ACCTGC 1 cut(s) 130
BglI GCCNNNNNGGC 1 cut(s) 98
BisI GCNGC 8 cut(s) 93, 102, 151, 185, 202, 268, 289, 468
BlsI GCNGC 8 cut(s) 94, 103, 152, 186, 203, 269, 290, 469
Bme1390I CCNGG 4 cut(s) 29, 68, 452, 509
Bme18I GGWCC 2 cut(s) 171, 247
BmeRI GACNNNNNGTC 1 cut(s) 118
BmgT120I GGNCC 3 cut(s) 171, 226, 247
BmiI GGNNCC 5 cut(s) 72, 233, 324, 343, 456
BmrFI CCNGG 4 cut(s) 29, 68, 452, 509
BmsI GCATC 2 cut(s) 152, 395
BpmI CTGGAG 1 cut(s) 491
BsaJI CCNNGG 3 cut(s) 87, 222, 458
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 228
Bse118I RCCGGY 3 cut(s) 82, 97, 212
Bse1I ACTGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 28
BseBI CCWGG 4 cut(s) 29, 68, 452, 509
BseDI CCNNGG 3 cut(s) 87, 222, 458
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 180, 228
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 3 cut(s) 44, 66, 119
BseNI ACTGG 1 cut(s) 235
BseXI GCAGC 4 cut(s) 171, 213, 300, 479
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 4 cut(s) 86, 92, 228, 267
BshNI GGYRCC 1 cut(s) 454
BsiHKAI GWGCWC 1 cut(s) 380
BsiSI CCGG 4 cut(s) 83, 98, 213, 229
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 180, 228
BsmAI GTCTC 2 cut(s) 126, 349
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 4 cut(s) 86, 92, 228, 267
Bsp1286I GDGCHC 2 cut(s) 222, 380
Bsp143I GATC 1 cut(s) 292
Bsp19I CCATGG 2 cut(s) 222, 458
BspACI CCGC 8 cut(s) 5, 93, 101, 150, 153, 165, 174, 268
BspANI GGCC 4 cut(s) 86, 92, 228, 267
BspCNI CTCAG 3 cut(s) 45, 67, 118
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 5 cut(s) 72, 233, 324, 343, 456
BspMI ACCTGC 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 454
BsrDI GCAATG 1 cut(s) 28
BsrFI RCCGGY 3 cut(s) 82, 97, 212
BsrI ACTGG 1 cut(s) 235
BssAI RCCGGY 3 cut(s) 82, 97, 212
BssECI CCNNGG 3 cut(s) 87, 222, 458
BssMI GATC 1 cut(s) 292
BssT1I CCWWGG 3 cut(s) 87, 222, 458
Bst2UI CCWGG 4 cut(s) 29, 68, 452, 509
Bst4CI ACNGT 2 cut(s) 395, 479
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 4 cut(s) 7, 59, 84, 99
BstDEI CTNAG 3 cut(s) 53, 75, 105
BstDSI CCRYGG 2 cut(s) 222, 458
BstF5I GGATG 1 cut(s) 167
BstFNI CGCG 1 cut(s) 95
BstHHI GCGC 2 cut(s) 97, 492
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 2 cut(s) 126, 349
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 4 cut(s) 79, 92, 98, 101
BstNI CCWGG 4 cut(s) 29, 68, 452, 509
BstSCI CCNGG 4 cut(s) 27, 66, 450, 507
BstSFI CTRYAG 1 cut(s) 283
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 4 cut(s) 171, 213, 300, 479
BsuRI GGCC 4 cut(s) 86, 92, 228, 267
BtgI CCRYGG 2 cut(s) 222, 458
BtsCI GGATG 1 cut(s) 167
BtsIMutI CAGTG 2 cut(s) 242, 391
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 4 cut(s) 7, 59, 84, 99
CfoI GCGC 2 cut(s) 97, 492
Cfr10I RCCGGY 3 cut(s) 82, 97, 212
Cfr13I GGNCC 3 cut(s) 171, 226, 247
Csp6I GTAC 1 cut(s) 480
CviAII CATG 2 cut(s) 223, 459
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 3 cut(s) 53, 75, 105
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
DriI GACNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 2 cut(s) 84, 265
Eam1104I CTCTTC 1 cut(s) 51
Eam1105I GACNNNNNGTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 378
Eco130I CCWWGG 3 cut(s) 87, 222, 458
Eco24I GRGCYC 2 cut(s) 222, 380
Eco47I GGWCC 2 cut(s) 171, 247
Eco53kI GAGCTC 1 cut(s) 378
EcoICRI GAGCTC 1 cut(s) 378
EcoRII CCWGG 4 cut(s) 27, 66, 450, 507
EcoT14I CCWWGG 3 cut(s) 87, 222, 458
EcoT38I GRGCYC 2 cut(s) 222, 380
ErhI CCWWGG 3 cut(s) 87, 222, 458
FaeI CATG 2 cut(s) 226, 462
FaiI YATR 8 cut(s) 224, 339, 415, 460, 488, 519, 545, 553
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 222, 458
FauI CCCGC 1 cut(s) 158
Fnu4HI GCNGC 8 cut(s) 93, 102, 151, 185, 202, 268, 289, 468
FokI GGATG 1 cut(s) 174
FriOI GRGCYC 2 cut(s) 222, 380
Fsp4HI GCNGC 8 cut(s) 93, 102, 151, 185, 202, 268, 289, 468
GlaI GCGC 2 cut(s) 96, 491
GluI GCNGC 8 cut(s) 93, 102, 151, 185, 202, 268, 289, 468
GsuI CTGGAG 1 cut(s) 491
HaeIII GGCC 4 cut(s) 86, 92, 228, 267
HapII CCGG 4 cut(s) 83, 98, 213, 229
HhaI GCGC 2 cut(s) 97, 492
Hin1II CATG 2 cut(s) 226, 462
Hin6I GCGC 2 cut(s) 95, 490
HinP1I GCGC 2 cut(s) 95, 490
HincII GTYRAC 2 cut(s) 145, 192
HindII GTYRAC 2 cut(s) 145, 192
HinfI GANTC 3 cut(s) 35, 193, 242
HpaII CCGG 4 cut(s) 83, 98, 213, 229
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 3 cut(s) 145, 171, 192
Hpy188I TCNGA 4 cut(s) 54, 108, 132, 247
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 3 cut(s) 145, 171, 192
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 3 cut(s) 260, 317, 442
HpyCH4III ACNGT 2 cut(s) 395, 479
HpyCH4V TGCA 2 cut(s) 386, 467
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 92, 98, 101
HpyF3I CTNAG 3 cut(s) 53, 75, 105
Hsp92II CATG 2 cut(s) 226, 462
HspAI GCGC 2 cut(s) 95, 490
KroI GCCGGC 2 cut(s) 82, 97
KroNI GCCGGC 2 cut(s) 84, 99
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 4 cut(s) 70, 231, 328, 375
Lsp1109I GCAGC 4 cut(s) 171, 213, 300, 479
LweI GCATC 2 cut(s) 152, 395
MaeIII GTNAC 1 cut(s) 473
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 4 cut(s) 38, 41, 354, 357
MhlI GDGCHC 2 cut(s) 222, 380
MluCI AATT 2 cut(s) 62, 420
MlyI GAGTC 2 cut(s) 187, 236
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 3 cut(s) 25, 54, 515
MreI CGCCGGCG 1 cut(s) 97
MroNI GCCGGC 2 cut(s) 82, 97
MseI TTAA 1 cut(s) 419
MspI CCGG 4 cut(s) 83, 98, 213, 229
MspR9I CCNGG 4 cut(s) 29, 68, 452, 509
MvaI CCWGG 4 cut(s) 29, 68, 452, 509
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 79, 92, 98, 101
NaeI GCCGGC 2 cut(s) 84, 99
NcoI CCATGG 2 cut(s) 222, 458
NdeII GATC 1 cut(s) 292
NgoMIV GCCGGC 2 cut(s) 82, 97
NlaIII CATG 2 cut(s) 226, 462
NlaIV GGNNCC 5 cut(s) 72, 233, 324, 343, 456
NmeAIII GCCGAG 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PdiI GCCGGC 2 cut(s) 84, 99
PfeI GAWTC 1 cut(s) 35
PfoI TCCNGGA 2 cut(s) 27, 66
PkrI GCNGC 8 cut(s) 94, 103, 152, 186, 203, 269, 290, 469
PleI GAGTC 2 cut(s) 187, 236
PpsI GAGTC 2 cut(s) 187, 236
PsiI TTATAA 1 cut(s) 553
Psp124BI GAGCTC 1 cut(s) 380
Psp6I CCWGG 4 cut(s) 27, 66, 450, 507
PspGI CCWGG 4 cut(s) 27, 66, 450, 507
PspN4I GGNNCC 5 cut(s) 72, 233, 324, 343, 456
PspPI GGNCC 3 cut(s) 171, 226, 247
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SacI GAGCTC 1 cut(s) 380
SaqAI TTAA 1 cut(s) 419
SatI GCNGC 8 cut(s) 93, 102, 151, 185, 202, 268, 289, 468
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 3 cut(s) 171, 226, 247
SchI GAGTC 2 cut(s) 187, 236
ScrFI CCNGG 4 cut(s) 29, 68, 452, 509
SduI GDGCHC 2 cut(s) 222, 380
SetI ASST 5 cut(s) 144, 252, 380, 472, 507
SfaNI GCATC 2 cut(s) 152, 395
SfcI CTRYAG 1 cut(s) 283
SgrAI CRCCGGYG 1 cut(s) 97
SinI GGWCC 2 cut(s) 171, 247
Sse9I AATT 2 cut(s) 62, 420
SsiI CCGC 8 cut(s) 5, 93, 101, 150, 153, 165, 174, 268
SstI GAGCTC 1 cut(s) 380
StyD4I CCNGG 4 cut(s) 27, 66, 450, 507
StyI CCWWGG 3 cut(s) 87, 222, 458
TaaI ACNGT 2 cut(s) 395, 479
TaqII GACCGA 1 cut(s) 125
TasI AATT 2 cut(s) 62, 420
TauI GCSGC 4 cut(s) 95, 104, 153, 270
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TscAI CASTG 2 cut(s) 242, 398
TseI GCWGC 4 cut(s) 184, 201, 288, 467
TspRI CASTG 2 cut(s) 242, 398
VpaK11BI GGWCC 2 cut(s) 171, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.