Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009470

Physical Location & Seq

Genomic Coordinates Reverse (-)

12495196 .. 12497603

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCGACCAACAACAGGGAGAGCAATGTCCAGGAGGAATCGAGCCCTCTCCTGAGCAAGCAATTCGAGGAGAACCAGAAGGATGCTGAGAAGCCCGCCAAGGCCTCGCCGGAGAAATCGCCGACGGATGTGGGGAATGTGAATGGAGGTGGTAATGGATGCGTGTGGACCGCCGATGGGCTGCCGTTGGGGCACGGGAGCGTGATGGGTGAGCCTATGGGTCGGGCTCAGTGGGACTCCAGCATCCTTGCTTGTCTTGGCCGTAATGATGAGTTCTGTAGCAGCGATCTTGAAGTTTGTCTTCTTGGAAGTGTGGCTCCTTGTGTGTTGTATGGAAGCAATGCTGAGAGACTTGGATCTGCTTCTGGGACGTTTGCAAATCACTGTTTGCCATACTCTGCTCTTTATCTGATTGGGAACACCTTTTTTGGTTGGAACTGCCTTGCACCGTGGTTTTCATATCCTAGGCGTACTGCCATCCGCCGCAAATTCAACCTAGAGGGCAGTTGTGAGGCACTTAATAGGTCTTGTGGGTGCTGTGGTAGCTTTATGGATGATGAGCAACAACAGGAACAATGTGAGACTGCCTGTGATTTTGCAACCCACGTGTTCTGTCATCCATGTGCTCTATGCCAGGAAGGTCGTGAGATCCGTCGCAGGCTGCCACATCCTGGTTTCAATGCTCAGCCAGTTCTGGTTATGATTCCTCCTGGGGAGCAGGCCATGGGCCGTGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

247

Amino Acids

26.67

Weight (kDa)

5.17

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37110
fragaria_vesca	FvH4_6g15540 FvH4_6g15540
malus_domestica	MD04G1102200.v1.1 MD12G1121900.v1.1
prunus_persica	Prupe.6G240600_v2.0.a1 Prupe.6G240600_v2.0.a1
pyrus_communis	pycom04g09760 pycom12g12100
rosa_chinensis	RchiOBHm_Chr3g0469051
rosa_laevigata	RLG00000024388
rosa_multiflora	Rmu_sc0000326.1_g000003 Rmu_sc0007933.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412280
rosa_rugosa	Rorug03G0098800
rosa_samantha	Rh3AG148100 Rh3BG170900 Rh3DG204200
rosa_wichuraiana	Rw0G010950 Rw0G014570 Rw0G014600 Rw3G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	671
AciI	CCGC	4 cut(s)	96, 171, 481, 484
AclWI	GGATC	2 cut(s)	364, 643
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	488
AcvI	CACGTG	1 cut(s)	607
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	3 cut(s)	15, 177, 671
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	3 cut(s)	293, 493, 679
AjnI	CCWGG	4 cut(s)	30, 633, 670, 709
AluBI	AGCT	2 cut(s)	546, 737
AluI	AGCT	2 cut(s)	546, 737
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	2 cut(s)	343, 575
AlwI	GGATC	2 cut(s)	364, 643
AoxI	GGCC	4 cut(s)	102, 259, 720, 727
ApeKI	GCWGC	3 cut(s)	181, 282, 661
ApoI	RAATTY	1 cut(s)	488
AspA2I	CCTAGG	1 cut(s)	464
AspS9I	GGNCC	2 cut(s)	168, 727
AsuHPI	GGTGA	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	168
AvrII	CCTAGG	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	195
BanII	GRGCYC	2 cut(s)	47, 229
BbrPI	CACGTG	1 cut(s)	607
BbsI	GAAGAC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	3 cut(s)	168, 294, 648
BccI	CCATC	3 cut(s)	170, 199, 485
BceAI	ACGGC	3 cut(s)	169, 246, 714
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	4 cut(s)	32, 635, 672, 711
BcoDI	GTCTC	2 cut(s)	343, 575
BfaI	CTAG	2 cut(s)	465, 497
BfmI	CTRYAG	1 cut(s)	277
BglI	GCCNNNNNGGC	1 cut(s)	190
BisI	GCNGC	4 cut(s)	182, 283, 484, 662
BlnI	CCTAGG	1 cut(s)	464
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	4 cut(s)	183, 284, 485, 663
Bme1390I	CCNGG	4 cut(s)	32, 635, 672, 711
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	168, 727
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	4 cut(s)	32, 635, 672, 711
BmsI	GCATC	3 cut(s)	73, 149, 252
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	684
BsaAI	YACGTR	1 cut(s)	607
BsaJI	CCNNGG	6 cut(s)	99, 449, 464, 710, 723, 730
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 177, 671
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	2 cut(s)	31, 346
BseBI	CCWGG	4 cut(s)	32, 635, 672, 711
BseDI	CCNNGG	6 cut(s)	99, 449, 464, 710, 723, 730
BseGI	GGATG	8 cut(s)	88, 133, 164, 243, 477, 559, 616, 667
BseLI	CCNNNNNNNGG	3 cut(s)	15, 177, 671
BseMI	GCAATG	2 cut(s)	31, 346
BseMII	CTCAG	5 cut(s)	44, 78, 242, 336, 698
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	3 cut(s)	168, 294, 648
BshFI	GGCC	4 cut(s)	104, 261, 722, 729
BsiHKAI	GWGCWC	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	2 cut(s)	248, 382
BslI	CCNNNNNNNGG	3 cut(s)	15, 177, 671
BsmAI	GTCTC	2 cut(s)	343, 575
BsmFI	GGGAC	2 cut(s)	248, 382
BsnI	GGCC	4 cut(s)	104, 261, 722, 729
Bsp1286I	GDGCHC	4 cut(s)	47, 195, 229, 628
Bsp143I	GATC	3 cut(s)	286, 356, 648
Bsp1720I	GCTNAGC	1 cut(s)	684
Bsp19I	CCATGG	1 cut(s)	723
BspACI	CCGC	4 cut(s)	96, 171, 481, 484
BspANI	GGCC	4 cut(s)	104, 261, 722, 729
BspCNI	CTCAG	5 cut(s)	45, 79, 241, 337, 697
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	2 cut(s)	364, 643
BsrDI	GCAATG	2 cut(s)	31, 346
BsrI	ACTGG	1 cut(s)	689
BssECI	CCNNGG	6 cut(s)	99, 449, 464, 710, 723, 730
BssMI	GATC	3 cut(s)	286, 356, 648
BssT1I	CCWWGG	3 cut(s)	99, 464, 723
Bst2UI	CCWGG	4 cut(s)	32, 635, 672, 711
Bst4CI	ACNGT	2 cut(s)	386, 450
BstBAI	YACGTR	1 cut(s)	607
BstC8I	GCNNGC	4 cut(s)	59, 96, 659, 720
BstDEI	CTNAG	5 cut(s)	53, 87, 228, 345, 684
BstDSI	CCRYGG	3 cut(s)	449, 723, 730
BstF5I	GGATG	8 cut(s)	88, 133, 164, 243, 477, 559, 616, 667
BstKTI	GATC	3 cut(s)	289, 359, 651
BstMAI	GTCTC	2 cut(s)	343, 575
BstMBI	GATC	3 cut(s)	286, 356, 648
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 543
BstNI	CCWGG	4 cut(s)	32, 635, 672, 711
BstSCI	CCNGG	4 cut(s)	30, 633, 670, 709
BstSFI	CTRYAG	1 cut(s)	277
BstSLI	GKGCMC	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	168, 294, 648
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	2 cut(s)	356, 648
BstYI	RGATCY	2 cut(s)	356, 648
BsuRI	GGCC	4 cut(s)	104, 261, 722, 729
BtgI	CCRYGG	3 cut(s)	449, 723, 730
BtsCI	GGATG	8 cut(s)	88, 133, 164, 243, 477, 559, 616, 667
BtsIMutI	CAGTG	2 cut(s)	236, 382
Cac8I	GCNNGC	4 cut(s)	59, 96, 659, 720
Cfr13I	GGNCC	2 cut(s)	168, 727
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	2 cut(s)	621, 724
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	5 cut(s)	53, 87, 228, 345, 684
DpnI	GATC	3 cut(s)	288, 358, 650
DpnII	GATC	3 cut(s)	286, 356, 648
EaeI	YGGCCR	1 cut(s)	259
EciI	GGCGGA	1 cut(s)	470
Eco130I	CCWWGG	3 cut(s)	99, 464, 723
Eco147I	AGGCCT	1 cut(s)	104
Eco24I	GRGCYC	2 cut(s)	47, 229
Eco47I	GGWCC	1 cut(s)	168
Eco72I	CACGTG	1 cut(s)	607
EcoRII	CCWGG	4 cut(s)	30, 633, 670, 709
EcoT14I	CCWWGG	3 cut(s)	99, 464, 723
EcoT38I	GRGCYC	2 cut(s)	47, 229
ErhI	CCWWGG	3 cut(s)	99, 464, 723
FaeI	CATG	2 cut(s)	624, 727
FaiI	YATR	9 cut(s)	218, 333, 394, 460, 551, 622, 631, 701, 725
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FaqI	GGGAC	2 cut(s)	248, 382
FatI	CATG	2 cut(s)	620, 723
FauI	CCCGC	1 cut(s)	103
Fnu4HI	GCNGC	4 cut(s)	182, 283, 484, 662
FokI	GGATG	8 cut(s)	95, 140, 171, 230, 464, 566, 603, 654
FriOI	GRGCYC	2 cut(s)	47, 229
Fsp4HI	GCNGC	4 cut(s)	182, 283, 484, 662
FspBI	CTAG	2 cut(s)	465, 497
GluI	GCNGC	4 cut(s)	182, 283, 484, 662
GsuI	CTGGAG	1 cut(s)	223
HaeIII	GGCC	4 cut(s)	104, 261, 722, 729
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	2 cut(s)	624, 727
HinfI	GANTC	3 cut(s)	38, 236, 703
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	3 cut(s)	52, 290, 644
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	2 cut(s)	127, 657
HpyAV	CCTTC	2 cut(s)	73, 632
HpyCH4III	ACNGT	2 cut(s)	386, 450
HpyCH4IV	ACGT	2 cut(s)	371, 606
HpyCH4V	TGCA	3 cut(s)	377, 446, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 543
HpyF3I	CTNAG	5 cut(s)	53, 87, 228, 345, 684
HpySE526I	ACGT	2 cut(s)	371, 606
Hsp92II	CATG	2 cut(s)	624, 727
Kzo9I	GATC	3 cut(s)	286, 356, 648
LmnI	GCTCC	4 cut(s)	198, 322, 715, 734
Lsp1109I	GCAGC	3 cut(s)	168, 294, 648
LweI	GCATC	3 cut(s)	73, 149, 252
MaeI	CTAG	2 cut(s)	465, 497
MaeII	ACGT	2 cut(s)	371, 606
MalI	GATC	3 cut(s)	288, 358, 650
MboI	GATC	3 cut(s)	286, 356, 648
MboII	GAAGA	1 cut(s)	293
MflI	RGATCY	2 cut(s)	356, 648
MhlI	GDGCHC	4 cut(s)	47, 195, 229, 628
MluCI	AATT	2 cut(s)	62, 488
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	8 cut(s)	28, 57, 61, 115, 140, 493, 505, 717
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	621
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	4 cut(s)	32, 635, 672, 711
MvaI	CCWGG	4 cut(s)	32, 635, 672, 711
MwoI	GCNNNNNNNGC	2 cut(s)	190, 543
NcoI	CCATGG	1 cut(s)	723
NdeII	GATC	3 cut(s)	286, 356, 648
NlaIII	CATG	2 cut(s)	624, 727
NlaIV	GGNNCC	1 cut(s)	318
PceI	AGGCCT	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	649
PfeI	GAWTC	2 cut(s)	38, 703
PflMI	CCANNNNNTGG	1 cut(s)	671
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	4 cut(s)	183, 284, 485, 663
PleI	GAGTC	1 cut(s)	230
PmaCI	CACGTG	1 cut(s)	607
PmlI	CACGTG	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	607
Psp6I	CCWGG	4 cut(s)	30, 633, 670, 709
PspCI	CACGTG	1 cut(s)	607
PspGI	CCWGG	4 cut(s)	30, 633, 670, 709
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	2 cut(s)	168, 727
PsuI	RGATCY	2 cut(s)	356, 648
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
RseI	CAYNNNNRTG	1 cut(s)	621
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	4 cut(s)	182, 283, 484, 662
Sau3AI	GATC	3 cut(s)	286, 356, 648
Sau96I	GGNCC	2 cut(s)	168, 727
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	4 cut(s)	32, 635, 672, 711
SduI	GDGCHC	4 cut(s)	47, 195, 229, 628
SetI	ASST	9 cut(s)	151, 374, 425, 498, 527, 548, 609, 643, 739
SfaNI	GCATC	3 cut(s)	73, 149, 252
SfcI	CTRYAG	1 cut(s)	277
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	621
Sse9I	AATT	2 cut(s)	62, 488
SseBI	AGGCCT	1 cut(s)	104
SsiI	CCGC	4 cut(s)	96, 171, 481, 484
SspMI	CTAG	2 cut(s)	465, 497
StuI	AGGCCT	1 cut(s)	104
StyD4I	CCNGG	4 cut(s)	30, 633, 670, 709
StyI	CCWWGG	3 cut(s)	99, 464, 723
TaaI	ACNGT	2 cut(s)	386, 450
TaiI	ACGT	2 cut(s)	374, 609
TaqI	TCGA	2 cut(s)	41, 66
TasI	AATT	2 cut(s)	62, 488
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	2 cut(s)	38, 703
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	2 cut(s)	236, 389
TseI	GCWGC	3 cut(s)	181, 282, 661
TspDTI	ATGAA	1 cut(s)	447
TspGWI	ACGGA	2 cut(s)	140, 641
TspRI	CASTG	2 cut(s)	236, 389
Van91I	CCANNNNNTGG	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	488
XmaJI	CCTAGG	1 cut(s)	464
XspI	CTAG	2 cut(s)	465, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.