FvH4_6g15540

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009470
Physical Location & Seq
Forward (+)
9664711 .. 9667192
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15540.t2

Sequence Viewer

Length: 936 bp
ATGGTTGGGTTGATTATTAGCTACCAACAACGCCAAGACCAAAAACGAAAAAACAAACGTCGCCTCTCTCCCCTCTTTTCATTTTCATCAAAAAACAAACGTCGCCTCTCTCCCCTCTTTTCATTTTCATCAATATTTCTAGGGTTTCGAATCCCGATTCCGATTTCGATTTCTCTTTCTCTTGATTTCTCAACCATGGCGGGAAACAGGGAGAGCAATGTCCAGGAGGAATCGAGCCCTCTTCTGAGCCAGCAGTTCCAGGAGCCTGAGAAGCCGGCCAAGGCGGCTCCGGCGGCTCAGATCGATGAGAAGTCTCCTGTTCAGATGGGGCAGGTCAACGGCGGAGGTAATGGATGCGGCTGGACTGCTGATGGGCTGCCGGTGACTCACGGCAGCGTCGTGGCTGGTGAGGCCATGGGCCGGAGCCAGTGGGACTCGGACCTTCTTGCCTGTCTTGGCCGCAACGATGAGTTCTGCAGCAGCGATCTTGAAGTTTGCCTTCTTGGAAGTGTGGCTCCTTGCGTTCTGTATGGAAGCAATGCTGAGAGACTTTTTTCTTCTACTGGGAGCTCATTTGCATCTCATTGTTTGACTTACTCTGGTCTGTATTTAATTGGCAATGCCTTCTTTGGTTGGAACTGCCTTGCACCATGGTTTGCTGCTCGTAACCGTACTGCTATGCGCCACAAGTTCAACCTGCAGGGTGGCTGCGAAACATTCCAAAACACTTGTGGGTGCTGTGGATCAATGGGAGAAGAGGATCAGGAACAATGTGAGGCCTTCTGTGATGTTGCCACTCATTTGTGCTGCCATCCCCTTGCCCTTTGCCAGGAAGGCCGTGAGGTCCGTCGCAGGTTGCCTCATCCTGGCTTCAATGCTCAACCCGTTCTGGTTATGATTCCTCCTGGAGAGCAAGGCATGGGCCGTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

312

Amino Acids

33.94

Weight (kDa)

6.59

Isoelectric Point (pI)

57.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 144 - 284 3e-13 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 322, 705, 843
AciI CCGC 6 cut(s) 200, 284, 293, 342, 357, 460
AclWI GGATC 2 cut(s) 751, 768
AcoI YGGCCR 2 cut(s) 276, 457
AfaI GTAC 1 cut(s) 673
AfiI CCNNNNNNNGG 3 cut(s) 420, 829, 866
AgsI TTSAA 3 cut(s) 491, 694, 874
AjnI CCWGG 5 cut(s) 222, 258, 828, 865, 904
AluBI AGCT 3 cut(s) 21, 570, 932
AluI AGCT 3 cut(s) 21, 570, 932
Alw21I GWGCWC 1 cut(s) 572
Alw26I GTCTC 2 cut(s) 318, 541
AlwI GGATC 2 cut(s) 751, 768
AoxI GGCC 7 cut(s) 276, 411, 418, 457, 777, 835, 922
ApeKI GCWGC 7 cut(s) 376, 393, 477, 480, 659, 708, 807
AspLEI GCGC 1 cut(s) 684
AspS9I GGNCC 4 cut(s) 418, 439, 844, 922
AsuHPI GGTGA 2 cut(s) 394, 419
AsuII TTCGAA 1 cut(s) 148
AvaII GGWCC 2 cut(s) 439, 844
BanII GRGCYC 2 cut(s) 239, 572
Bbv12I GWGCWC 1 cut(s) 572
BbvI GCAGC 7 cut(s) 363, 405, 489, 492, 646, 695, 794
BccI CCATC 3 cut(s) 319, 365, 819
BceAI ACGGC 4 cut(s) 355, 406, 822, 909
BciT130I CCWGG 5 cut(s) 224, 260, 830, 867, 906
BcoDI GTCTC 2 cut(s) 318, 541
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 2 cut(s) 475, 698
BfuAI ACCTGC 3 cut(s) 322, 705, 843
BglI GCCNNNNNGGC 2 cut(s) 284, 834
Bme1390I CCNGG 5 cut(s) 224, 260, 830, 867, 906
Bme18I GGWCC 2 cut(s) 439, 844
BmgT120I GGNCC 4 cut(s) 418, 439, 844, 922
BmiI GGNNCC 4 cut(s) 264, 288, 425, 516
BmrFI CCNGG 5 cut(s) 224, 260, 830, 867, 906
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 2 cut(s) 344, 587
BmuI ACTGGG 1 cut(s) 573
BpmI CTGGAG 1 cut(s) 927
Bpu14I TTCGAA 1 cut(s) 148
Bsa29I ATCGAT 1 cut(s) 303
BsaJI CCNNGG 4 cut(s) 195, 279, 414, 650
Bsc4I CCNNNNNNNGG 3 cut(s) 420, 829, 866
Bse118I RCCGGY 2 cut(s) 274, 379
Bse1I ACTGG 2 cut(s) 427, 568
Bse3DI GCAATG 3 cut(s) 223, 544, 625
BseBI CCWGG 5 cut(s) 224, 260, 830, 867, 906
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 4 cut(s) 195, 279, 414, 650
BseGI GGATG 3 cut(s) 359, 811, 862
BseLI CCNNNNNNNGG 3 cut(s) 420, 829, 866
BseMI GCAATG 3 cut(s) 223, 544, 625
BseMII CTCAG 4 cut(s) 236, 258, 311, 534
BseNI ACTGG 2 cut(s) 427, 568
BseXI GCAGC 7 cut(s) 363, 405, 489, 492, 646, 695, 794
BshFI GGCC 7 cut(s) 278, 413, 420, 459, 779, 837, 924
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 572
BsiSI CCGG 4 cut(s) 275, 290, 380, 421
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 3 cut(s) 420, 829, 866
BsmAI GTCTC 2 cut(s) 318, 541
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 7 cut(s) 278, 413, 420, 459, 779, 837, 924
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 2 cut(s) 239, 572
Bsp143I GATC 4 cut(s) 300, 484, 743, 760
Bsp19I CCATGG 3 cut(s) 195, 414, 650
BspACI CCGC 6 cut(s) 200, 284, 293, 342, 357, 460
BspANI GGCC 7 cut(s) 278, 413, 420, 459, 779, 837, 924
BspCNI CTCAG 4 cut(s) 237, 259, 310, 535
BspDI ATCGAT 1 cut(s) 303
BspLI GGNNCC 4 cut(s) 264, 288, 425, 516
BspMAI CTGCAG 2 cut(s) 479, 702
BspMI ACCTGC 3 cut(s) 322, 705, 843
BspPI GGATC 2 cut(s) 751, 768
BspT104I TTCGAA 1 cut(s) 148
BsrDI GCAATG 3 cut(s) 223, 544, 625
BsrFI RCCGGY 2 cut(s) 274, 379
BsrI ACTGG 2 cut(s) 427, 568
BssAI RCCGGY 2 cut(s) 274, 379
BssECI CCNNGG 4 cut(s) 195, 279, 414, 650
BssMI GATC 4 cut(s) 300, 484, 743, 760
BssT1I CCWWGG 4 cut(s) 195, 279, 414, 650
Bst2UI CCWGG 5 cut(s) 224, 260, 830, 867, 906
Bst4CI ACNGT 1 cut(s) 671
Bst6I CTCTTC 2 cut(s) 246, 750
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 2 cut(s) 251, 276
BstDEI CTNAG 4 cut(s) 245, 267, 297, 543
BstDSI CCRYGG 3 cut(s) 195, 414, 650
BstENI CCTNNNNNAGG 1 cut(s) 827
BstF5I GGATG 3 cut(s) 359, 811, 862
BstHHI GCGC 1 cut(s) 684
BstKTI GATC 4 cut(s) 303, 487, 746, 763
BstMAI GTCTC 2 cut(s) 318, 541
BstMBI GATC 4 cut(s) 300, 484, 743, 760
BstMWI GCNNNNNNNGC 6 cut(s) 271, 284, 290, 293, 410, 834
BstNI CCWGG 5 cut(s) 224, 260, 830, 867, 906
BstSCI CCNGG 5 cut(s) 222, 258, 828, 865, 904
BstSFI CTRYAG 2 cut(s) 475, 698
BstV1I GCAGC 7 cut(s) 363, 405, 489, 492, 646, 695, 794
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 7 cut(s) 278, 413, 420, 459, 779, 837, 924
BsuTUI ATCGAT 1 cut(s) 303
BtgI CCRYGG 3 cut(s) 195, 414, 650
BtsCI GGATG 3 cut(s) 359, 811, 862
BtsIMutI CAGTG 1 cut(s) 434
BveI ACCTGC 3 cut(s) 322, 705, 843
Cac8I GCNNGC 2 cut(s) 251, 276
CfoI GCGC 1 cut(s) 684
Cfr10I RCCGGY 2 cut(s) 274, 379
Cfr13I GGNCC 4 cut(s) 418, 439, 844, 922
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 672
CviAII CATG 4 cut(s) 196, 415, 651, 919
CviQI GTAC 1 cut(s) 672
DdeI CTNAG 4 cut(s) 245, 267, 297, 543
DpnI GATC 4 cut(s) 302, 486, 745, 762
DpnII GATC 4 cut(s) 300, 484, 743, 760
EaeI YGGCCR 2 cut(s) 276, 457
Eam1104I CTCTTC 2 cut(s) 246, 750
EarI CTCTTC 2 cut(s) 246, 750
EciI GGCGGA 1 cut(s) 357
Ecl136II GAGCTC 1 cut(s) 570
Eco130I CCWWGG 4 cut(s) 195, 279, 414, 650
Eco147I AGGCCT 1 cut(s) 779
Eco24I GRGCYC 2 cut(s) 239, 572
Eco47I GGWCC 2 cut(s) 439, 844
Eco53kI GAGCTC 1 cut(s) 570
EcoICRI GAGCTC 1 cut(s) 570
EcoNI CCTNNNNNAGG 1 cut(s) 827
EcoRII CCWGG 5 cut(s) 222, 258, 828, 865, 904
EcoT14I CCWWGG 4 cut(s) 195, 279, 414, 650
EcoT38I GRGCYC 2 cut(s) 239, 572
ErhI CCWWGG 4 cut(s) 195, 279, 414, 650
FaeI CATG 4 cut(s) 199, 418, 654, 922
FaiI YATR 7 cut(s) 197, 416, 531, 652, 680, 896, 920
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FaqI GGGAC 1 cut(s) 446
FatI CATG 4 cut(s) 195, 414, 650, 918
FauI CCCGC 1 cut(s) 193
FokI GGATG 3 cut(s) 366, 798, 849
FriOI GRGCYC 2 cut(s) 239, 572
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 683
GsuI CTGGAG 1 cut(s) 927
HaeIII GGCC 7 cut(s) 278, 413, 420, 459, 779, 837, 924
HapII CCGG 4 cut(s) 275, 290, 380, 421
HgaI GACGC 1 cut(s) 385
HhaI GCGC 1 cut(s) 684
Hin1II CATG 4 cut(s) 199, 418, 654, 922
Hin6I GCGC 1 cut(s) 682
HinP1I GCGC 1 cut(s) 682
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 930
HinfI GANTC 6 cut(s) 150, 157, 230, 385, 434, 898
HpaII CCGG 4 cut(s) 275, 290, 380, 421
HphI GGTGA 2 cut(s) 394, 419
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 5 cut(s) 162, 246, 300, 324, 439
Hpy188III TCNNGA 4 cut(s) 154, 182, 488, 764
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 4 cut(s) 63, 105, 401, 852
HpyAV CCTTC 5 cut(s) 452, 509, 634, 790, 827
HpyCH4III ACNGT 1 cut(s) 671
HpyCH4IV ACGT 2 cut(s) 58, 100
HpyCH4V TGCA 4 cut(s) 477, 578, 647, 700
HpyF10VI GCNNNNNNNGC 6 cut(s) 271, 284, 290, 293, 410, 834
HpyF3I CTNAG 4 cut(s) 245, 267, 297, 543
HpySE526I ACGT 2 cut(s) 58, 100
Hsp92II CATG 4 cut(s) 199, 418, 654, 922
HspAI GCGC 1 cut(s) 682
KroI GCCGGC 1 cut(s) 274
KroNI GCCGGC 1 cut(s) 276
Kzo9I GATC 4 cut(s) 300, 484, 743, 760
LmnI GCTCC 5 cut(s) 262, 292, 423, 520, 567
Lsp1109I GCAGC 7 cut(s) 363, 405, 489, 492, 646, 695, 794
LweI GCATC 2 cut(s) 344, 587
MaeI CTAG 1 cut(s) 140
MaeII ACGT 2 cut(s) 58, 100
MaeIII GTNAC 2 cut(s) 382, 665
MalI GATC 4 cut(s) 302, 486, 745, 762
MboI GATC 4 cut(s) 300, 484, 743, 760
MboII GAAGA 3 cut(s) 233, 549, 767
MhlI GDGCHC 2 cut(s) 239, 572
MluCI AATT 1 cut(s) 612
MlyI GAGTC 2 cut(s) 379, 428
MmeI TCCRAC 1 cut(s) 614
MroNI GCCGGC 1 cut(s) 274
MseI TTAA 1 cut(s) 611
MspI CCGG 4 cut(s) 275, 290, 380, 421
MspR9I CCNGG 5 cut(s) 224, 260, 830, 867, 906
MvaI CCWGG 5 cut(s) 224, 260, 830, 867, 906
MwoI GCNNNNNNNGC 6 cut(s) 271, 284, 290, 293, 410, 834
NaeI GCCGGC 1 cut(s) 276
NcoI CCATGG 3 cut(s) 195, 414, 650
NdeII GATC 4 cut(s) 300, 484, 743, 760
NgoMIV GCCGGC 1 cut(s) 274
NlaIII CATG 4 cut(s) 199, 418, 654, 922
NlaIV GGNNCC 4 cut(s) 264, 288, 425, 516
NmuCI GTSAC 1 cut(s) 382
NspV TTCGAA 1 cut(s) 148
PceI AGGCCT 1 cut(s) 779
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PdiI GCCGGC 1 cut(s) 276
PfeI GAWTC 4 cut(s) 150, 157, 230, 898
PfoI TCCNGGA 3 cut(s) 222, 258, 904
PleI GAGTC 2 cut(s) 379, 428
PpsI GAGTC 2 cut(s) 379, 428
Psp124BI GAGCTC 1 cut(s) 572
Psp6I CCWGG 5 cut(s) 222, 258, 828, 865, 904
PspGI CCWGG 5 cut(s) 222, 258, 828, 865, 904
PspN4I GGNNCC 4 cut(s) 264, 288, 425, 516
PspPI GGNCC 4 cut(s) 418, 439, 844, 922
PstI CTGCAG 2 cut(s) 479, 702
RsaI GTAC 1 cut(s) 673
RsaNI GTAC 1 cut(s) 672
SacI GAGCTC 1 cut(s) 572
SaqAI TTAA 1 cut(s) 611
Sau3AI GATC 4 cut(s) 300, 484, 743, 760
Sau96I GGNCC 4 cut(s) 418, 439, 844, 922
SbfI CCTGCAGG 1 cut(s) 702
SchI GAGTC 2 cut(s) 379, 428
ScrFI CCNGG 5 cut(s) 224, 260, 830, 867, 906
SdaI CCTGCAGG 1 cut(s) 702
SduI GDGCHC 2 cut(s) 239, 572
SfaNI GCATC 2 cut(s) 344, 587
SfcI CTRYAG 2 cut(s) 475, 698
SfuI TTCGAA 1 cut(s) 148
SinI GGWCC 2 cut(s) 439, 844
Sse8387I CCTGCAGG 1 cut(s) 702
Sse9I AATT 1 cut(s) 612
SseBI AGGCCT 1 cut(s) 779
SsiI CCGC 6 cut(s) 200, 284, 293, 342, 357, 460
SspI AATATT 1 cut(s) 135
SspMI CTAG 1 cut(s) 140
SstI GAGCTC 1 cut(s) 572
StuI AGGCCT 1 cut(s) 779
StyD4I CCNGG 5 cut(s) 222, 258, 828, 865, 904
StyI CCWWGG 4 cut(s) 195, 279, 414, 650
TaaI ACNGT 1 cut(s) 671
TaiI ACGT 2 cut(s) 61, 103
TaqI TCGA 4 cut(s) 148, 167, 233, 303
TasI AATT 1 cut(s) 612
TauI GCSGC 4 cut(s) 287, 296, 360, 462
TfiI GAWTC 4 cut(s) 150, 157, 230, 898
Tru1I TTAA 1 cut(s) 611
Tru9I TTAA 1 cut(s) 611
TscAI CASTG 1 cut(s) 434
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 7 cut(s) 376, 393, 477, 480, 659, 708, 807
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 4 cut(s) 69, 75, 111, 117
TspGWI ACGGA 1 cut(s) 836
TspRI CASTG 1 cut(s) 434
VpaK11BI GGWCC 2 cut(s) 439, 844
XagI CCTNNNNNAGG 1 cut(s) 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 728
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.