Rmu_sc0007933.1_g000001

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007933.1
OG0009470
Physical Location & Seq
Forward (+)
1 .. 807
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007933.1_g000001.1.cds

Sequence Viewer

Length: 392 bp
gccttcttggaagtgtggctccttgtgtgttgtatggaaccactgccgagagactttcttcttctatggggagctcgtttgcatctcactgtttgacttactctggtctatatttaattggatatgcctttggtttgaactgccttgcaccatggtttgcagctcgtaaccgtactgctatgcgccacaagttcaacctccaggcaacatctaggtgctgcggatcaatgggagatgaggatgaggaacagtgtgaggccttctgtgatgttgtgactcatttgtgctgccatcaatgtgccctttgccaggaaggtcgtgaggtccgtcgcaggttgcctcatcccggttttagtgctcattcctcctggagtgcaaggcatgggccgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

129

Amino Acids

14.15

Weight (kDa)

7.69

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 323
AciI CCGC 1 cut(s) 221
AclWI GGATC 1 cut(s) 231
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 309, 346
AgsI TTSAA 2 cut(s) 138, 195
AjnI CCWGG 3 cut(s) 200, 308, 367
AluBI AGCT 2 cut(s) 74, 163
AluI AGCT 2 cut(s) 74, 163
Alw21I GWGCWC 2 cut(s) 76, 360
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 231
AoxI GGCC 2 cut(s) 257, 385
ApeKI GCWGC 3 cut(s) 160, 218, 287
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 2 cut(s) 324, 385
AsuC2I CCSGG 1 cut(s) 347
AvaII GGWCC 1 cut(s) 324
BaeGI GKGCMC 1 cut(s) 303
BanII GRGCYC 1 cut(s) 76
Bbv12I GWGCWC 2 cut(s) 76, 360
BbvI GCAGC 3 cut(s) 172, 205, 274
BccI CCATC 1 cut(s) 299
BceAI ACGGC 1 cut(s) 372
BciT130I CCWGG 3 cut(s) 202, 310, 369
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 323
BisI GCNGC 3 cut(s) 161, 219, 288
BlsI GCNGC 3 cut(s) 162, 220, 289
Bme1390I CCNGG 4 cut(s) 202, 310, 347, 369
Bme18I GGWCC 1 cut(s) 324
BmgT120I GGNCC 2 cut(s) 324, 385
BmiI GGNNCC 2 cut(s) 20, 39
BmrFI CCNGG 4 cut(s) 202, 310, 347, 369
BmsI GCATC 1 cut(s) 91
BpmI CTGGAG 2 cut(s) 184, 390
BpuMI CCSGG 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 346
BseBI CCWGG 3 cut(s) 202, 310, 369
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 2 cut(s) 246, 342
BseLI CCNNNNNNNGG 2 cut(s) 309, 346
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 3 cut(s) 172, 205, 274
BshFI GGCC 2 cut(s) 259, 387
BsiHKAI GWGCWC 2 cut(s) 76, 360
BsiSI CCGG 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 309, 346
BsmAI GTCTC 1 cut(s) 45
BsnI GGCC 2 cut(s) 259, 387
Bsp1286I GDGCHC 3 cut(s) 76, 303, 360
Bsp143I GATC 1 cut(s) 223
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 1 cut(s) 221
BspANI GGCC 2 cut(s) 259, 387
BspLI GGNNCC 2 cut(s) 20, 39
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 151
Bst2UI CCWGG 3 cut(s) 202, 310, 369
Bst4CI ACNGT 3 cut(s) 91, 172, 251
BstDSI CCRYGG 1 cut(s) 151
BstENI CCTNNNNNAGG 1 cut(s) 307
BstF5I GGATG 2 cut(s) 246, 342
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 1 cut(s) 223
BstNI CCWGG 3 cut(s) 202, 310, 369
BstSCI CCNGG 4 cut(s) 200, 308, 345, 367
BstSLI GKGCMC 1 cut(s) 303
BstV1I GCAGC 3 cut(s) 172, 205, 274
BsuRI GGCC 2 cut(s) 259, 387
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 2 cut(s) 246, 342
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 3 cut(s) 41, 87, 256
BveI ACCTGC 1 cut(s) 323
CfoI GCGC 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 324, 385
Csp6I GTAC 1 cut(s) 173
CviAII CATG 2 cut(s) 152, 382
CviJI RGCY 5 cut(s) 19, 74, 163, 259, 387
CviKI_1 RGCY 5 cut(s) 19, 74, 163, 259, 387
CviQI GTAC 1 cut(s) 173
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Ecl136II GAGCTC 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 151
Eco147I AGGCCT 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 74
EcoNI CCTNNNNNAGG 1 cut(s) 307
EcoRII CCWGG 3 cut(s) 200, 308, 367
EcoT14I CCWWGG 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 2 cut(s) 155, 385
FaiI YATR 7 cut(s) 35, 67, 111, 125, 153, 181, 383
FatI CATG 2 cut(s) 151, 381
Fnu4HI GCNGC 3 cut(s) 161, 219, 288
FokI GGATG 2 cut(s) 253, 329
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 3 cut(s) 161, 219, 288
FspBI CTAG 1 cut(s) 212
GlaI GCGC 1 cut(s) 184
GluI GCNGC 3 cut(s) 161, 219, 288
GsuI CTGGAG 2 cut(s) 184, 390
HaeIII GGCC 2 cut(s) 259, 387
HapII CCGG 1 cut(s) 347
HhaI GCGC 1 cut(s) 185
Hin1II CATG 2 cut(s) 155, 385
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 1 cut(s) 276
HpaII CCGG 1 cut(s) 347
Hpy188III TCNNGA 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 3 cut(s) 13, 270, 307
HpyCH4III ACNGT 3 cut(s) 91, 172, 251
HpyCH4V TGCA 4 cut(s) 82, 148, 160, 376
Hsp92II CATG 2 cut(s) 155, 385
HspAI GCGC 1 cut(s) 183
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 2 cut(s) 24, 71
LpnPI CCDG 9 cut(s) 89, 187, 214, 295, 318, 322, 354, 360, 381
Lsp1109I GCAGC 3 cut(s) 172, 205, 274
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 212
MaeIII GTNAC 2 cut(s) 166, 273
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 2 cut(s) 50, 53
MhlI GDGCHC 3 cut(s) 76, 303, 360
MluCI AATT 1 cut(s) 116
MlyI GAGTC 1 cut(s) 270
MnlI CCTC 7 cut(s) 208, 231, 237, 249, 315, 350, 375
MseI TTAA 1 cut(s) 115
MslI CAYNNNNRTG 2 cut(s) 213, 296
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 4 cut(s) 202, 310, 347, 369
MvaI CCWGG 3 cut(s) 202, 310, 369
NciI CCSGG 1 cut(s) 347
NcoI CCATGG 1 cut(s) 151
NdeII GATC 1 cut(s) 223
NlaIII CATG 2 cut(s) 155, 385
NlaIV GGNNCC 2 cut(s) 20, 39
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 273
PceI AGGCCT 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 3 cut(s) 162, 220, 289
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 76
Psp6I CCWGG 3 cut(s) 200, 308, 367
PspGI CCWGG 3 cut(s) 200, 308, 367
PspN4I GGNNCC 2 cut(s) 20, 39
PspPI GGNCC 2 cut(s) 324, 385
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 2 cut(s) 213, 296
SacI GAGCTC 1 cut(s) 76
SaqAI TTAA 1 cut(s) 115
SatI GCNGC 3 cut(s) 161, 219, 288
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 2 cut(s) 324, 385
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 4 cut(s) 202, 310, 347, 369
SduI GDGCHC 3 cut(s) 76, 303, 360
SetI ASST 7 cut(s) 76, 165, 200, 217, 318, 326, 337
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 1 cut(s) 324
SmiMI CAYNNNNRTG 2 cut(s) 213, 296
Sse9I AATT 1 cut(s) 116
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 1 cut(s) 221
SspMI CTAG 1 cut(s) 212
SstI GAGCTC 1 cut(s) 76
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 4 cut(s) 200, 308, 345, 367
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 3 cut(s) 91, 172, 251
TasI AATT 1 cut(s) 116
Tru1I TTAA 1 cut(s) 115
Tru9I TTAA 1 cut(s) 115
TscAI CASTG 3 cut(s) 48, 94, 256
TseFI GTSAC 1 cut(s) 273
TseI GCWGC 3 cut(s) 160, 218, 287
Tsp45I GTSAC 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 316
TspRI CASTG 3 cut(s) 48, 94, 256
VpaK11BI GGWCC 1 cut(s) 324
XagI CCTNNNNNAGG 1 cut(s) 307
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.