Rw3G013970

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0009470
Physical Location & Seq
Forward (+)
13710642 .. 13712368
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G013970.1

Sequence Viewer

Length: 741 bp
ATGGCGGGCAACGGGGAGAGCAATGTCCAGGAGGAATCGAGCCCTCTTCTGAGCCAGCAATTCCAGGAGCCTGAGAAGCCGGCCAAGGCCGCGCCGGCGGCACAGACCTACGAGAAGTCTCCCGTTCAGATGGGCCAGGTCAACGGCGGCGGTAATGGATGCGGGTGGACCGCCGATGGGCTGCCGTTGACTCACGGAAGCGTGGTGGCCGGTGAGCCCATGGGCCGGAGCCAGTGGGACTCGGACCTTCTTGCCTGTCTTGGCCGCAACGATGAGTTCTGTAGCAGCGATCTTGAAGTTTGCCTTCTTGGAAGTGTGGCTCCTTGTGTGTTGTATGGAACCAATGCCGAGAGACTTTCTTCTTCTACGGGGAGCTCGTTTGCATCTCACTGTTTGACTTACTCTGGTCTATATTTAATTGGAAATGCCTTCTTTGGTTGGAACTGCCTGGCACCATGGTTTGCAGCTCGTAACCGTACTGCTATGCGCCACAAGTTCAACCTCCAGGGTGGCTGTGAAGCATTTCAAAGCTCATGTGGGTGCTGCGGATCAATGGGAGATGAGGATCAGGAACAGTGTGAGGCCTTCTGTGATGTTGGGACTCATTTGTTCTGCCATTCATGTGCCCTTTGCCAGGAAGGTCGCGAGGTCCGTCGCAGGTTGCCTCATCCCGGTTTTAATGCTCAACCCGTTCTGGTTATGATTCCTCCTGGAGAGCAAGGCATGGGCCGTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

246

Amino Acids

26.23

Weight (kDa)

4.93

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 79 - 216 4.9e-15 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 648
AccB1I GGYRCC 1 cut(s) 451
AccII CGCG 2 cut(s) 92, 645
AciI CCGC 9 cut(s) 5, 90, 98, 147, 150, 162, 171, 265, 546
AclWI GGATC 2 cut(s) 556, 573
AcoI YGGCCR 3 cut(s) 81, 207, 262
AfaI GTAC 1 cut(s) 478
AfiI CCNNNNNNNGG 4 cut(s) 177, 225, 634, 671
AgsI TTSAA 3 cut(s) 296, 499, 527
AjnI CCWGG 7 cut(s) 27, 63, 135, 447, 504, 633, 709
AluBI AGCT 4 cut(s) 375, 467, 531, 737
AluI AGCT 4 cut(s) 375, 467, 531, 737
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 2 cut(s) 123, 346
AlwI GGATC 2 cut(s) 556, 573
AoxI GGCC 8 cut(s) 81, 87, 133, 207, 223, 262, 582, 727
ApeKI GCWGC 4 cut(s) 181, 285, 464, 543
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 2 cut(s) 94, 489
AspS9I GGNCC 6 cut(s) 133, 168, 223, 244, 649, 727
AsuC2I CCSGG 1 cut(s) 672
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 3 cut(s) 168, 244, 649
BaeGI GKGCMC 1 cut(s) 628
BanI GGYRCC 1 cut(s) 451
BanII GRGCYC 3 cut(s) 44, 219, 377
Bbv12I GWGCWC 1 cut(s) 377
BbvI GCAGC 4 cut(s) 168, 297, 476, 530
BccI CCATC 2 cut(s) 124, 170
BceAI ACGGC 3 cut(s) 160, 169, 714
BciT130I CCWGG 7 cut(s) 29, 65, 137, 449, 506, 635, 711
BcnI CCSGG 1 cut(s) 672
BcoDI GTCTC 2 cut(s) 123, 346
BfmI CTRYAG 1 cut(s) 280
BfuAI ACCTGC 1 cut(s) 648
BglI GCCNNNNNGGC 1 cut(s) 95
BisI GCNGC 8 cut(s) 90, 99, 148, 182, 265, 286, 465, 544
BlsI GCNGC 8 cut(s) 91, 100, 149, 183, 266, 287, 466, 545
Bme1390I CCNGG 8 cut(s) 29, 65, 137, 449, 506, 635, 672, 711
Bme18I GGWCC 3 cut(s) 168, 244, 649
BmgT120I GGNCC 6 cut(s) 133, 168, 223, 244, 649, 727
BmiI GGNNCC 5 cut(s) 69, 230, 321, 340, 453
BmrFI CCNGG 8 cut(s) 29, 65, 137, 449, 506, 635, 672, 711
BmsI GCATC 2 cut(s) 149, 392
BpmI CTGGAG 2 cut(s) 488, 732
BpuMI CCSGG 1 cut(s) 672
BsaBI GATNNNNATC 1 cut(s) 564
BsaJI CCNNGG 4 cut(s) 84, 219, 455, 505
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 225, 634, 671
Bse118I RCCGGY 3 cut(s) 79, 94, 209
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 7 cut(s) 29, 65, 137, 449, 506, 635, 711
BseDI CCNNGG 4 cut(s) 84, 219, 455, 505
BseGI GGATG 2 cut(s) 164, 667
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 4 cut(s) 177, 225, 634, 671
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 2 cut(s) 41, 63
BseNI ACTGG 1 cut(s) 232
BseSI GKGCMC 1 cut(s) 628
BseXI GCAGC 4 cut(s) 168, 297, 476, 530
Bsh1236I CGCG 2 cut(s) 92, 645
BshFI GGCC 8 cut(s) 83, 89, 135, 209, 225, 264, 584, 729
BshNI GGYRCC 1 cut(s) 451
BsiHKAI GWGCWC 1 cut(s) 377
BsiSI CCGG 5 cut(s) 80, 95, 210, 226, 672
BslFI GGGAC 2 cut(s) 251, 613
BslI CCNNNNNNNGG 4 cut(s) 177, 225, 634, 671
BsmAI GTCTC 2 cut(s) 123, 346
BsmFI GGGAC 2 cut(s) 251, 613
BsnI GGCC 8 cut(s) 83, 89, 135, 209, 225, 264, 584, 729
Bsp1286I GDGCHC 4 cut(s) 44, 219, 377, 628
Bsp143I GATC 3 cut(s) 289, 548, 565
Bsp19I CCATGG 2 cut(s) 219, 455
Bsp68I TCGCGA 1 cut(s) 645
BspACI CCGC 9 cut(s) 5, 90, 98, 147, 150, 162, 171, 265, 546
BspANI GGCC 8 cut(s) 83, 89, 135, 209, 225, 264, 584, 729
BspCNI CTCAG 2 cut(s) 42, 64
BspFNI CGCG 2 cut(s) 92, 645
BspLI GGNNCC 5 cut(s) 69, 230, 321, 340, 453
BspMI ACCTGC 1 cut(s) 648
BspPI GGATC 2 cut(s) 556, 573
BspT107I GGYRCC 1 cut(s) 451
BsrDI GCAATG 1 cut(s) 28
BsrFI RCCGGY 3 cut(s) 79, 94, 209
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 3 cut(s) 79, 94, 209
BssECI CCNNGG 4 cut(s) 84, 219, 455, 505
BssMI GATC 3 cut(s) 289, 548, 565
BssT1I CCWWGG 3 cut(s) 84, 219, 455
Bst2UI CCWGG 7 cut(s) 29, 65, 137, 449, 506, 635, 711
Bst4CI ACNGT 3 cut(s) 392, 476, 576
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 4 cut(s) 7, 56, 81, 96
BstDEI CTNAG 2 cut(s) 50, 72
BstDSI CCRYGG 2 cut(s) 219, 455
BstENI CCTNNNNNAGG 1 cut(s) 632
BstF5I GGATG 2 cut(s) 164, 667
BstFNI CGCG 2 cut(s) 92, 645
BstHHI GCGC 2 cut(s) 94, 489
BstKTI GATC 3 cut(s) 292, 551, 568
BstMAI GTCTC 2 cut(s) 123, 346
BstMBI GATC 3 cut(s) 289, 548, 565
BstMWI GCNNNNNNNGC 4 cut(s) 76, 89, 95, 98
BstNI CCWGG 7 cut(s) 29, 65, 137, 449, 506, 635, 711
BstSCI CCNGG 8 cut(s) 27, 63, 135, 447, 504, 633, 670, 709
BstSFI CTRYAG 1 cut(s) 280
BstSLI GKGCMC 1 cut(s) 628
BstUI CGCG 2 cut(s) 92, 645
BstV1I GCAGC 4 cut(s) 168, 297, 476, 530
BsuRI GGCC 8 cut(s) 83, 89, 135, 209, 225, 264, 584, 729
BtgI CCRYGG 2 cut(s) 219, 455
BtsCI GGATG 2 cut(s) 164, 667
BtsIMutI CAGTG 3 cut(s) 239, 388, 581
BtuMI TCGCGA 1 cut(s) 645
BveI ACCTGC 1 cut(s) 648
Cac8I GCNNGC 4 cut(s) 7, 56, 81, 96
CfoI GCGC 2 cut(s) 94, 489
Cfr10I RCCGGY 3 cut(s) 79, 94, 209
Cfr13I GGNCC 6 cut(s) 133, 168, 223, 244, 649, 727
Csp6I GTAC 1 cut(s) 477
CviAII CATG 5 cut(s) 220, 456, 534, 621, 724
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 2 cut(s) 50, 72
DpnI GATC 3 cut(s) 291, 550, 567
DpnII GATC 3 cut(s) 289, 548, 565
EaeI YGGCCR 3 cut(s) 81, 207, 262
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 375
Eco130I CCWWGG 3 cut(s) 84, 219, 455
Eco147I AGGCCT 1 cut(s) 584
Eco24I GRGCYC 3 cut(s) 44, 219, 377
Eco47I GGWCC 3 cut(s) 168, 244, 649
Eco53kI GAGCTC 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 375
EcoNI CCTNNNNNAGG 1 cut(s) 632
EcoRII CCWGG 7 cut(s) 27, 63, 135, 447, 504, 633, 709
EcoT14I CCWWGG 3 cut(s) 84, 219, 455
EcoT38I GRGCYC 3 cut(s) 44, 219, 377
ErhI CCWWGG 3 cut(s) 84, 219, 455
FaeI CATG 5 cut(s) 223, 459, 537, 624, 727
FaiI YATR 9 cut(s) 221, 336, 412, 457, 485, 535, 622, 701, 725
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 2 cut(s) 251, 613
FatI CATG 5 cut(s) 219, 455, 533, 620, 723
FauI CCCGC 1 cut(s) 155
Fnu4HI GCNGC 8 cut(s) 90, 99, 148, 182, 265, 286, 465, 544
FokI GGATG 2 cut(s) 171, 654
FriOI GRGCYC 3 cut(s) 44, 219, 377
Fsp4HI GCNGC 8 cut(s) 90, 99, 148, 182, 265, 286, 465, 544
GlaI GCGC 2 cut(s) 93, 488
GluI GCNGC 8 cut(s) 90, 99, 148, 182, 265, 286, 465, 544
GsuI CTGGAG 2 cut(s) 488, 732
HaeIII GGCC 8 cut(s) 83, 89, 135, 209, 225, 264, 584, 729
HapII CCGG 5 cut(s) 80, 95, 210, 226, 672
HhaI GCGC 2 cut(s) 94, 489
Hin1II CATG 5 cut(s) 223, 459, 537, 624, 727
Hin6I GCGC 2 cut(s) 92, 487
HinP1I GCGC 2 cut(s) 92, 487
HincII GTYRAC 2 cut(s) 142, 189
HindII GTYRAC 2 cut(s) 142, 189
HindIII AAGCTT 1 cut(s) 735
HinfI GANTC 5 cut(s) 35, 190, 239, 601, 703
HpaII CCGG 5 cut(s) 80, 95, 210, 226, 672
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 3 cut(s) 142, 168, 189
Hpy188I TCNGA 3 cut(s) 51, 129, 244
Hpy188III TCNNGA 3 cut(s) 293, 569, 644
Hpy8I GTNNAC 3 cut(s) 142, 168, 189
Hpy99I CGWCG 1 cut(s) 657
HpyAV CCTTC 5 cut(s) 257, 314, 439, 595, 632
HpyCH4III ACNGT 3 cut(s) 392, 476, 576
HpyCH4V TGCA 2 cut(s) 383, 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 89, 95, 98
HpyF3I CTNAG 2 cut(s) 50, 72
Hsp92II CATG 5 cut(s) 223, 459, 537, 624, 727
HspAI GCGC 2 cut(s) 92, 487
KroI GCCGGC 2 cut(s) 79, 94
KroNI GCCGGC 2 cut(s) 81, 96
Kzo9I GATC 3 cut(s) 289, 548, 565
LmnI GCTCC 4 cut(s) 67, 228, 325, 372
Lsp1109I GCAGC 4 cut(s) 168, 297, 476, 530
LweI GCATC 2 cut(s) 149, 392
MaeIII GTNAC 1 cut(s) 470
MalI GATC 3 cut(s) 291, 550, 567
MboI GATC 3 cut(s) 289, 548, 565
MboII GAAGA 3 cut(s) 38, 351, 354
MhlI GDGCHC 4 cut(s) 44, 219, 377, 628
MluCI AATT 2 cut(s) 59, 417
MlyI GAGTC 3 cut(s) 184, 233, 595
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 8 cut(s) 25, 54, 512, 556, 574, 640, 675, 717
MreI CGCCGGCG 1 cut(s) 94
MroNI GCCGGC 2 cut(s) 79, 94
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 2 cut(s) 416, 678
MslI CAYNNNNRTG 2 cut(s) 538, 621
MspI CCGG 5 cut(s) 80, 95, 210, 226, 672
MspR9I CCNGG 8 cut(s) 29, 65, 137, 449, 506, 635, 672, 711
MvaI CCWGG 7 cut(s) 29, 65, 137, 449, 506, 635, 711
MvnI CGCG 2 cut(s) 92, 645
MwoI GCNNNNNNNGC 4 cut(s) 76, 89, 95, 98
NaeI GCCGGC 2 cut(s) 81, 96
NciI CCSGG 1 cut(s) 672
NcoI CCATGG 2 cut(s) 219, 455
NdeII GATC 3 cut(s) 289, 548, 565
NgoMIV GCCGGC 2 cut(s) 79, 94
NlaIII CATG 5 cut(s) 223, 459, 537, 624, 727
NlaIV GGNNCC 5 cut(s) 69, 230, 321, 340, 453
NmeAIII GCCGAG 1 cut(s) 373
NruI TCGCGA 1 cut(s) 645
PceI AGGCCT 1 cut(s) 584
PcsI WCGNNNNNNNCGW 2 cut(s) 374, 649
PdiI GCCGGC 2 cut(s) 81, 96
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 2 cut(s) 35, 703
PfoI TCCNGGA 3 cut(s) 27, 63, 709
PkrI GCNGC 8 cut(s) 91, 100, 149, 183, 266, 287, 466, 545
PleI GAGTC 3 cut(s) 184, 233, 595
PpsI GAGTC 3 cut(s) 184, 233, 595
Psp124BI GAGCTC 1 cut(s) 377
Psp6I CCWGG 7 cut(s) 27, 63, 135, 447, 504, 633, 709
PspGI CCWGG 7 cut(s) 27, 63, 135, 447, 504, 633, 709
PspN4I GGNNCC 5 cut(s) 69, 230, 321, 340, 453
PspPI GGNCC 6 cut(s) 133, 168, 223, 244, 649, 727
RruI TCGCGA 1 cut(s) 645
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
RseI CAYNNNNRTG 2 cut(s) 538, 621
SacI GAGCTC 1 cut(s) 377
SaqAI TTAA 2 cut(s) 416, 678
SatI GCNGC 8 cut(s) 90, 99, 148, 182, 265, 286, 465, 544
Sau3AI GATC 3 cut(s) 289, 548, 565
Sau96I GGNCC 6 cut(s) 133, 168, 223, 244, 649, 727
SchI GAGTC 3 cut(s) 184, 233, 595
ScrFI CCNGG 8 cut(s) 29, 65, 137, 449, 506, 635, 672, 711
SduI GDGCHC 4 cut(s) 44, 219, 377, 628
SfaNI GCATC 2 cut(s) 149, 392
SfcI CTRYAG 1 cut(s) 280
SgrAI CRCCGGYG 1 cut(s) 94
SinI GGWCC 3 cut(s) 168, 244, 649
SmiMI CAYNNNNRTG 2 cut(s) 538, 621
Sse9I AATT 2 cut(s) 59, 417
SseBI AGGCCT 1 cut(s) 584
SsiI CCGC 9 cut(s) 5, 90, 98, 147, 150, 162, 171, 265, 546
SstI GAGCTC 1 cut(s) 377
StuI AGGCCT 1 cut(s) 584
StyD4I CCNGG 8 cut(s) 27, 63, 135, 447, 504, 633, 670, 709
StyI CCWWGG 3 cut(s) 84, 219, 455
TaaI ACNGT 3 cut(s) 392, 476, 576
TaqI TCGA 1 cut(s) 38
TasI AATT 2 cut(s) 59, 417
TauI GCSGC 4 cut(s) 92, 101, 150, 267
TfiI GAWTC 2 cut(s) 35, 703
Tru1I TTAA 2 cut(s) 416, 678
Tru9I TTAA 2 cut(s) 416, 678
TscAI CASTG 3 cut(s) 239, 395, 581
TseI GCWGC 4 cut(s) 181, 285, 464, 543
TspDTI ATGAA 1 cut(s) 609
TspGWI ACGGA 2 cut(s) 210, 641
TspRI CASTG 3 cut(s) 239, 395, 581
VpaK11BI GGWCC 3 cut(s) 168, 244, 649
XagI CCTNNNNNAGG 1 cut(s) 632
XmnI GAANNNNTTC 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.