Rw0G014600

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00652
OG0009470
Physical Location & Seq
Reverse (-)
71535 .. 73034
1500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014600.1

Sequence Viewer

Length: 507 bp
ATGGGCCGGAGCCAGTGGGACTCGGACCTTCTTGCCTGTCTTGGCCGCAACGATGAGTTCTGTAGCAGTGATCTTGAAGTTTGCCTTCTTGGAAGTGTGGCTCCTTGTGTGTTGTATGGAACCACTGCCGAGAGACTTTCTTCTTCTATGGGGAGCTCGTTTGCATCTCACTGTTTGACTTACTCTGGTCTATATTTAATTGGATATGCCTTTGGTTTGAACTGCCTTGCACCATGGTTTGCAGCTCGTAACCGTACTGCTATGCGCCACAAGTTCAACCTCCAGGGTGGCTGTGAAGCATATAGGTGCTGCGGATCAATGGGAGATGAGGATGAGGAACAGTGTGAGGCCTTCTGTGATGTTGTGACTCATTTGTGCTGCCATCAATGTGCCCTTTGCCAGGAAGGTCGTGAGGTCCGTCGAAGGTTGCCTCATCCCGGTTTTAGTGCTCAACCCGTTCTGGTTATGATTCCTCCTGGAGAGCAAGGCATGGGCCGTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

168

Amino Acids

18.39

Weight (kDa)

5.3

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 6 - 138 4.7e-18 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 46, 312
AclWI GGATC 1 cut(s) 322
AcoI YGGCCR 1 cut(s) 43
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 2 cut(s) 400, 437
AgsI TTSAA 3 cut(s) 77, 220, 277
AjnI CCWGG 3 cut(s) 282, 399, 475
AluBI AGCT 3 cut(s) 156, 245, 503
AluI AGCT 3 cut(s) 156, 245, 503
Alw21I GWGCWC 2 cut(s) 158, 451
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 1 cut(s) 322
AoxI GGCC 4 cut(s) 4, 43, 348, 493
ApeKI GCWGC 3 cut(s) 242, 309, 378
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 4 cut(s) 4, 25, 415, 493
AsuC2I CCSGG 1 cut(s) 438
AvaII GGWCC 2 cut(s) 25, 415
BaeGI GKGCMC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 158
Bbv12I GWGCWC 2 cut(s) 158, 451
BbvI GCAGC 3 cut(s) 254, 296, 365
BccI CCATC 1 cut(s) 390
BceAI ACGGC 1 cut(s) 480
BciT130I CCWGG 3 cut(s) 284, 401, 477
BcnI CCSGG 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 127
BfmI CTRYAG 1 cut(s) 61
BisI GCNGC 4 cut(s) 46, 243, 310, 379
BlsI GCNGC 4 cut(s) 47, 244, 311, 380
Bme1390I CCNGG 4 cut(s) 284, 401, 438, 477
Bme18I GGWCC 2 cut(s) 25, 415
BmgT120I GGNCC 4 cut(s) 4, 25, 415, 493
BmiI GGNNCC 3 cut(s) 11, 102, 121
BmrFI CCNGG 4 cut(s) 284, 401, 438, 477
BmsI GCATC 1 cut(s) 173
BpmI CTGGAG 2 cut(s) 266, 498
BpuMI CCSGG 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 233, 283
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 437
Bse1I ACTGG 1 cut(s) 13
BseBI CCWGG 3 cut(s) 284, 401, 477
BseDI CCNNGG 2 cut(s) 233, 283
BseGI GGATG 2 cut(s) 337, 433
BseLI CCNNNNNNNGG 2 cut(s) 400, 437
BseNI ACTGG 1 cut(s) 13
BseSI GKGCMC 1 cut(s) 394
BseXI GCAGC 3 cut(s) 254, 296, 365
BshFI GGCC 4 cut(s) 6, 45, 350, 495
BsiHKAI GWGCWC 2 cut(s) 158, 451
BsiSI CCGG 2 cut(s) 7, 438
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 400, 437
BsmAI GTCTC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 4 cut(s) 6, 45, 350, 495
Bsp1286I GDGCHC 3 cut(s) 158, 394, 451
Bsp143I GATC 2 cut(s) 70, 314
Bsp19I CCATGG 1 cut(s) 233
BspACI CCGC 2 cut(s) 46, 312
BspANI GGCC 4 cut(s) 6, 45, 350, 495
BspLI GGNNCC 3 cut(s) 11, 102, 121
BspPI GGATC 1 cut(s) 322
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 2 cut(s) 233, 283
BssMI GATC 2 cut(s) 70, 314
BssT1I CCWWGG 1 cut(s) 233
Bst2UI CCWGG 3 cut(s) 284, 401, 477
Bst4CI ACNGT 3 cut(s) 173, 254, 342
BstDSI CCRYGG 1 cut(s) 233
BstENI CCTNNNNNAGG 1 cut(s) 398
BstF5I GGATG 2 cut(s) 337, 433
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 2 cut(s) 73, 317
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 2 cut(s) 70, 314
BstNI CCWGG 3 cut(s) 284, 401, 477
BstSCI CCNGG 4 cut(s) 282, 399, 436, 475
BstSFI CTRYAG 1 cut(s) 61
BstSLI GKGCMC 1 cut(s) 394
BstV1I GCAGC 3 cut(s) 254, 296, 365
BsuRI GGCC 4 cut(s) 6, 45, 350, 495
BtgI CCRYGG 1 cut(s) 233
BtsCI GGATG 2 cut(s) 337, 433
BtsI GCAGTG 2 cut(s) 73, 123
BtsIMutI CAGTG 5 cut(s) 20, 73, 123, 169, 347
CfoI GCGC 1 cut(s) 267
Cfr13I GGNCC 4 cut(s) 4, 25, 415, 493
Csp6I GTAC 1 cut(s) 255
CviAII CATG 2 cut(s) 234, 490
CviQI GTAC 1 cut(s) 255
DpnI GATC 2 cut(s) 72, 316
DpnII GATC 2 cut(s) 70, 314
EaeI YGGCCR 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 233
Eco147I AGGCCT 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 2 cut(s) 25, 415
Eco53kI GAGCTC 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 156
EcoNI CCTNNNNNAGG 1 cut(s) 398
EcoRII CCWGG 3 cut(s) 282, 399, 475
EcoT14I CCWWGG 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 2 cut(s) 237, 493
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 1 cut(s) 32
FatI CATG 2 cut(s) 233, 489
Fnu4HI GCNGC 4 cut(s) 46, 243, 310, 379
FokI GGATG 2 cut(s) 344, 420
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 4 cut(s) 46, 243, 310, 379
GlaI GCGC 1 cut(s) 266
GluI GCNGC 4 cut(s) 46, 243, 310, 379
GsuI CTGGAG 2 cut(s) 266, 498
HaeIII GGCC 4 cut(s) 6, 45, 350, 495
HapII CCGG 2 cut(s) 7, 438
HhaI GCGC 1 cut(s) 267
Hin1II CATG 2 cut(s) 237, 493
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 501
HinfI GANTC 3 cut(s) 20, 367, 469
HpaII CCGG 2 cut(s) 7, 438
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 74, 410
Hpy99I CGWCG 1 cut(s) 423
HpyAV CCTTC 5 cut(s) 38, 95, 361, 398, 417
HpyCH4III ACNGT 3 cut(s) 173, 254, 342
HpyCH4V TGCA 3 cut(s) 164, 230, 242
Hsp92II CATG 2 cut(s) 237, 493
HspAI GCGC 1 cut(s) 265
Kzo9I GATC 2 cut(s) 70, 314
LmnI GCTCC 3 cut(s) 9, 106, 153
Lsp1109I GCAGC 3 cut(s) 254, 296, 365
LweI GCATC 1 cut(s) 173
MaeIII GTNAC 2 cut(s) 248, 364
MalI GATC 2 cut(s) 72, 316
MboI GATC 2 cut(s) 70, 314
MboII GAAGA 2 cut(s) 132, 135
MhlI GDGCHC 3 cut(s) 158, 394, 451
MluCI AATT 1 cut(s) 198
MlyI GAGTC 2 cut(s) 14, 361
MnlI CCTC 7 cut(s) 290, 322, 328, 340, 406, 441, 483
MseI TTAA 1 cut(s) 197
MslI CAYNNNNRTG 2 cut(s) 304, 387
MspI CCGG 2 cut(s) 7, 438
MspR9I CCNGG 4 cut(s) 284, 401, 438, 477
MvaI CCWGG 3 cut(s) 284, 401, 477
NciI CCSGG 1 cut(s) 438
NcoI CCATGG 1 cut(s) 233
NdeII GATC 2 cut(s) 70, 314
NlaIII CATG 2 cut(s) 237, 493
NlaIV GGNNCC 3 cut(s) 11, 102, 121
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 364
PceI AGGCCT 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 415
PfeI GAWTC 1 cut(s) 469
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 4 cut(s) 47, 244, 311, 380
PleI GAGTC 2 cut(s) 14, 361
PpsI GAGTC 2 cut(s) 14, 361
Psp124BI GAGCTC 1 cut(s) 158
Psp6I CCWGG 3 cut(s) 282, 399, 475
PspGI CCWGG 3 cut(s) 282, 399, 475
PspN4I GGNNCC 3 cut(s) 11, 102, 121
PspPI GGNCC 4 cut(s) 4, 25, 415, 493
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 2 cut(s) 304, 387
SacI GAGCTC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 4 cut(s) 46, 243, 310, 379
Sau3AI GATC 2 cut(s) 70, 314
Sau96I GGNCC 4 cut(s) 4, 25, 415, 493
SchI GAGTC 2 cut(s) 14, 361
ScrFI CCNGG 4 cut(s) 284, 401, 438, 477
SduI GDGCHC 3 cut(s) 158, 394, 451
SetI ASST 9 cut(s) 30, 158, 247, 282, 308, 409, 417, 428, 505
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 61
SinI GGWCC 2 cut(s) 25, 415
SmiMI CAYNNNNRTG 2 cut(s) 304, 387
Sse9I AATT 1 cut(s) 198
SseBI AGGCCT 1 cut(s) 350
SsiI CCGC 2 cut(s) 46, 312
SstI GAGCTC 1 cut(s) 158
StuI AGGCCT 1 cut(s) 350
StyD4I CCNGG 4 cut(s) 282, 399, 436, 475
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 3 cut(s) 173, 254, 342
TaqI TCGA 1 cut(s) 421
TasI AATT 1 cut(s) 198
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 1 cut(s) 469
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 5 cut(s) 20, 73, 130, 176, 347
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 3 cut(s) 242, 309, 378
Tsp45I GTSAC 1 cut(s) 364
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 5 cut(s) 20, 73, 130, 176, 347
VpaK11BI GGWCC 2 cut(s) 25, 415
XagI CCTNNNNNAGG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.