Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Forward (+)

15900635 .. 15903218

Gene Structure 2584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGACACCGAGATGGAGACAGAACAAATATACCAGGTCGATGTCGGAAATCTCTTGGCTTTCAATCCCAATCACCGCTTCCCATCTGCTCCTTCTTCAAGGGGGGAGCTTGTGAAGGAGATCCTAACGGAGGGAACAAAACTTGTTCAGGAAATAGCCAATAAACTTTTCAACTTTCCTTCTACTGAAACAAATGATGGTCCTATTGTCCAATTGCCTCCGCCTACAACCAAACTTCCTAGAGAGAAACATATTCCAAGGCCTAAGCCTCCTACGAAGTGGGAAGAGTTTGCGCTTAAGAAAGGTATACAGAAGCGCAAGAAGGAAAAAGTTGTATGGGATGAACAAACTAATCAGTTTAAGCGTCGCCATGGTTATGACCGTGTTAACGATGATAATGATGTTCCCATCATTGAGGCGAAAGAATCAGATGAACCAGGAGTAGATCCTTTTGCCAAGAGACTAGATGATAAGAAGAAGAGAGTTGGAAAGCAAGAAAAGAATAGACTTCAGAATCTGAAGGCTGCTGAAAAAGCTGGTGCTTTACCAAGCCATGTCCAACTTGCTGCAACATCATTGCCCATATCAGGAACGAAAGCTCAACCAAAGAAAATTGGAAAGGATGAACTTGGAGATGTAGCAGGTTTAGCCGCTACTTCAACCGCTAGTGGTGGAAAATTCGATAAAAAGTTGCCTGGAGAAAAACCTCCAAAGAAGCAGGGCAAACATCACAAGTATTTACCGGTTGTATCAGGGCGTGGGGATGTTAACGCAGAAAAAGAACAGACAAATAATGTACTCAGCAAGATATTCTCAAAGCATTCGCATGAGATCCTCAATGTTGGCAAGGCGATAAACATGTACAACGTCAAGAAGGAGAAGAAGAAGTCAGGAAGGTCAGACAAGTTGAAACCTAAGAAGGACATCACCAAGAAGCCTGCCAACAAAGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

318

Amino Acids

35.53

Weight (kDa)

9.81

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRS1	PF04939	11 - 173	1.1e-52	Ribosome biogenesis regulatory protein (RRS1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	632
AccI	GTMKAC	1 cut(s)	307
AciI	CCGC	4 cut(s)	76, 221, 651, 663
AclWI	GGATC	3 cut(s)	115, 440, 826
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	2 cut(s)	494, 539
AfaI	GTAC	2 cut(s)	798, 863
AfiI	CCNNNNNNNGG	2 cut(s)	130, 587
AflII	CTTAAG	1 cut(s)	296
AflIII	ACRYGT	1 cut(s)	858
AgeI	ACCGGT	1 cut(s)	742
AgsI	TTSAA	5 cut(s)	64, 99, 172, 660, 910
AjnI	CCWGG	3 cut(s)	33, 436, 694
AjuI	GAANNNNNNNTTGG	4 cut(s)	62, 94, 152, 184
AluBI	AGCT	3 cut(s)	109, 536, 599
AluI	AGCT	3 cut(s)	109, 536, 599
Alw26I	GTCTC	2 cut(s)	11, 454
AlwI	GGATC	3 cut(s)	115, 440, 826
AlwNI	CAGNNNCTG	1 cut(s)	517
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	524, 566
ApoI	RAATTY	1 cut(s)	677
AsiGI	ACCGGT	1 cut(s)	742
AspLEI	GCGC	2 cut(s)	295, 318
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	65, 919
AvaII	GGWCC	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	511, 553
BccI	CCATC	4 cut(s)	7, 91, 191, 416
BciT130I	CCWGG	3 cut(s)	35, 438, 696
BcoDI	GTCTC	2 cut(s)	11, 454
BfaI	CTAG	3 cut(s)	240, 464, 666
BfrI	CTTAAG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	632
BisI	GCNGC	3 cut(s)	525, 567, 651
BlsI	GCNGC	3 cut(s)	526, 568, 652
Bme1390I	CCNGG	3 cut(s)	35, 438, 696
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmrFI	CCNGG	3 cut(s)	35, 438, 696
BpmI	CTGGAG	1 cut(s)	717
Bpu10I	CCTNAGC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	257, 370
BsaWI	WCCGGW	1 cut(s)	742
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 587
Bse118I	RCCGGY	1 cut(s)	742
Bse3DI	GCAATG	1 cut(s)	575
BseBI	CCWGG	3 cut(s)	35, 438, 696
BseDI	CCNNGG	2 cut(s)	257, 370
BseGI	GGATG	3 cut(s)	346, 628, 769
BseLI	CCNNNNNNNGG	2 cut(s)	130, 587
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	1 cut(s)	814
BseXI	GCAGC	2 cut(s)	511, 553
BshFI	GGCC	1 cut(s)	262
BshTI	ACCGGT	1 cut(s)	742
BsiSI	CCGG	1 cut(s)	743
BslI	CCNNNNNNNGG	2 cut(s)	130, 587
BsmAI	GTCTC	2 cut(s)	11, 454
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	1 cut(s)	262
Bsp1407I	TGTACA	1 cut(s)	861
Bsp143I	GATC	3 cut(s)	120, 445, 831
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	4 cut(s)	76, 221, 651, 663
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	1 cut(s)	813
BspMI	ACCTGC	1 cut(s)	632
BspPI	GGATC	3 cut(s)	115, 440, 826
BspTI	CTTAAG	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	575
BsrFI	RCCGGY	1 cut(s)	742
BsrGI	TGTACA	1 cut(s)	861
BssAI	RCCGGY	1 cut(s)	742
BssECI	CCNNGG	2 cut(s)	257, 370
BssMI	GATC	3 cut(s)	120, 445, 831
BssNAI	GTATAC	1 cut(s)	308
BssT1I	CCWWGG	2 cut(s)	257, 370
Bst1107I	GTATAC	1 cut(s)	308
Bst2UI	CCWGG	3 cut(s)	35, 438, 696
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	2 cut(s)	279, 473
BstAFI	CTTAAG	1 cut(s)	296
BstAUI	TGTACA	1 cut(s)	861
BstC8I	GCNNGC	1 cut(s)	939
BstDEI	CTNAG	3 cut(s)	264, 800, 915
BstDSI	CCRYGG	1 cut(s)	370
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstF5I	GGATG	3 cut(s)	346, 628, 769
BstHHI	GCGC	2 cut(s)	295, 318
BstKTI	GATC	3 cut(s)	123, 448, 834
BstMAI	GTCTC	2 cut(s)	11, 454
BstMBI	GATC	3 cut(s)	120, 445, 831
BstMWI	GCNNNNNNNGC	3 cut(s)	533, 647, 947
BstNI	CCWGG	3 cut(s)	35, 438, 696
BstNSI	RCATGY	1 cut(s)	862
BstSCI	CCNGG	3 cut(s)	33, 436, 694
BstV1I	GCAGC	2 cut(s)	511, 553
BstX2I	RGATCY	3 cut(s)	120, 445, 831
BstYI	RGATCY	3 cut(s)	120, 445, 831
BstZ17I	GTATAC	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	262
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	3 cut(s)	346, 628, 769
BveI	ACCTGC	1 cut(s)	632
Cac8I	GCNNGC	1 cut(s)	939
CaiI	CAGNNNCTG	1 cut(s)	517
CfoI	GCGC	2 cut(s)	295, 318
Cfr10I	RCCGGY	1 cut(s)	742
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	1 cut(s)	353
CsiI	ACCWGGT	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	797, 862
CspAI	ACCGGT	1 cut(s)	742
CviAII	CATG	4 cut(s)	371, 554, 827, 859
CviQI	GTAC	2 cut(s)	797, 862
DdeI	CTNAG	3 cut(s)	264, 800, 915
DpnI	GATC	3 cut(s)	122, 447, 833
DpnII	GATC	3 cut(s)	120, 445, 831
Eam1104I	CTCTTC	2 cut(s)	279, 473
EarI	CTCTTC	2 cut(s)	279, 473
EciI	GGCGGA	1 cut(s)	210
Eco130I	CCWWGG	2 cut(s)	257, 370
Eco147I	AGGCCT	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	2 cut(s)	494, 539
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoRII	CCWGG	3 cut(s)	33, 436, 694
EcoT14I	CCWWGG	2 cut(s)	257, 370
ErhI	CCWWGG	2 cut(s)	257, 370
FaeI	CATG	4 cut(s)	374, 557, 830, 862
FatI	CATG	4 cut(s)	370, 553, 826, 858
FblI	GTMKAC	1 cut(s)	307
Fnu4HI	GCNGC	3 cut(s)	525, 567, 651
FokI	GGATG	3 cut(s)	353, 635, 776
Fsp4HI	GCNGC	3 cut(s)	525, 567, 651
FspBI	CTAG	3 cut(s)	240, 464, 666
GlaI	GCGC	2 cut(s)	294, 317
GluI	GCNGC	3 cut(s)	525, 567, 651
GsuI	CTGGAG	1 cut(s)	717
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	1 cut(s)	743
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	2 cut(s)	295, 318
Hin1II	CATG	4 cut(s)	374, 557, 830, 862
Hin6I	GCGC	2 cut(s)	293, 316
HinP1I	GCGC	2 cut(s)	293, 316
HincII	GTYRAC	2 cut(s)	388, 769
HindII	GTYRAC	2 cut(s)	388, 769
HinfI	GANTC	2 cut(s)	425, 514
HpaI	GTTAAC	2 cut(s)	388, 769
HpaII	CCGG	1 cut(s)	743
HphI	GGTGA	2 cut(s)	65, 919
Hpy166II	GTNNAC	3 cut(s)	308, 388, 769
Hpy188I	TCNGA	5 cut(s)	47, 430, 513, 519, 901
Hpy188III	TCNNGA	4 cut(s)	149, 588, 871, 891
Hpy8I	GTNNAC	3 cut(s)	308, 388, 769
Hpy99I	CGWCG	1 cut(s)	369
HpyAV	CCTTC	8 cut(s)	102, 109, 189, 316, 514, 868, 888, 913
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	867
HpyCH4V	TGCA	1 cut(s)	569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	533, 647, 947
HpyF3I	CTNAG	3 cut(s)	264, 800, 915
HpySE526I	ACGT	1 cut(s)	867
Hsp92II	CATG	4 cut(s)	374, 557, 830, 862
HspAI	GCGC	2 cut(s)	293, 316
KspAI	GTTAAC	2 cut(s)	388, 769
Kzo9I	GATC	3 cut(s)	120, 445, 831
LmnI	GCTCC	2 cut(s)	94, 106
Lsp1109I	GCAGC	2 cut(s)	511, 553
MabI	ACCWGGT	1 cut(s)	33
MaeI	CTAG	3 cut(s)	240, 464, 666
MaeII	ACGT	1 cut(s)	867
MalI	GATC	3 cut(s)	122, 447, 833
MboI	GATC	3 cut(s)	120, 445, 831
MboII	GAAGA	6 cut(s)	87, 296, 487, 490, 892, 895
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	3 cut(s)	120, 445, 831
MluCI	AATT	3 cut(s)	212, 612, 677
MmeI	TCCRAC	3 cut(s)	25, 466, 583
MnlI	CCTC	6 cut(s)	124, 228, 279, 409, 717, 845
MseI	TTAA	4 cut(s)	297, 360, 387, 768
MslI	CAYNNNNRTG	3 cut(s)	11, 375, 825
MspCI	CTTAAG	1 cut(s)	296
MspI	CCGG	1 cut(s)	743
MspR9I	CCNGG	3 cut(s)	35, 438, 696
MunI	CAATTG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	820
MvaI	CCWGG	3 cut(s)	35, 438, 696
MwoI	GCNNNNNNNGC	3 cut(s)	533, 647, 947
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	3 cut(s)	120, 445, 831
NlaIII	CATG	4 cut(s)	374, 557, 830, 862
NspI	RCATGY	1 cut(s)	862
PceI	AGGCCT	1 cut(s)	262
PciI	ACATGT	1 cut(s)	858
PctI	GAATGC	1 cut(s)	820
PfeI	GAWTC	2 cut(s)	425, 514
PinAI	ACCGGT	1 cut(s)	742
PkrI	GCNGC	3 cut(s)	526, 568, 652
PscI	ACATGT	1 cut(s)	858
Psp6I	CCWGG	3 cut(s)	33, 436, 694
PspGI	CCWGG	3 cut(s)	33, 436, 694
PspPI	GGNCC	1 cut(s)	200
PstNI	CAGNNNCTG	1 cut(s)	517
PsuI	RGATCY	3 cut(s)	120, 445, 831
RsaI	GTAC	2 cut(s)	798, 863
RsaNI	GTAC	2 cut(s)	797, 862
RseI	CAYNNNNRTG	3 cut(s)	11, 375, 825
SaqAI	TTAA	4 cut(s)	297, 360, 387, 768
SatI	GCNGC	3 cut(s)	525, 567, 651
Sau3AI	GATC	3 cut(s)	120, 445, 831
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	35, 438, 696
SexAI	ACCWGGT	1 cut(s)	33
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	3 cut(s)	11, 375, 825
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	3 cut(s)	212, 612, 677
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	4 cut(s)	76, 221, 651, 663
SspMI	CTAG	3 cut(s)	240, 464, 666
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	3 cut(s)	33, 436, 694
StyI	CCWWGG	2 cut(s)	257, 370
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	1 cut(s)	870
TaqI	TCGA	2 cut(s)	39, 681
TasI	AATT	3 cut(s)	212, 612, 677
TatI	WGTACW	2 cut(s)	796, 861
TauI	GCSGC	1 cut(s)	653
TfiI	GAWTC	2 cut(s)	425, 514
Tru1I	TTAA	4 cut(s)	297, 360, 387, 768
Tru9I	TTAA	4 cut(s)	297, 360, 387, 768
TseI	GCWGC	2 cut(s)	524, 566
TspDTI	ATGAA	3 cut(s)	357, 447, 639
TspGWI	ACGGA	1 cut(s)	143
Vha464I	CTTAAG	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	200
XagI	CCTNNNNNAGG	1 cut(s)	128
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	1 cut(s)	862
XmiI	GTMKAC	1 cut(s)	307
XspI	CTAG	3 cut(s)	240, 464, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.