Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Forward (+)

3267410 .. 3269165

Gene Structure 1756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG041600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGAGAACTGCGCCTGATTCCAAAGCCTAAACCTCCTACAAAATGGGAACAGTTTGCCCAGAAGAAAGGTATAAAGAACCGTAAGAAAGACAAGATTGCATATGATGAGTCCAGTGAAACTTGGAAACGTCGCTATGGATATGATCATGCAAATGATGAGGATAATGTGCCTATCATTGAGGCAAAGTTGACTGATGTGCCAGGGGAGGATCCCTTTGCTAAAAGACGAGAAGATAAAAAGAAACGTGTTGAGAAGCAAGACAAAAACAGGTTGCAGAACTTGAAGCAAGCTGCTAAAGTTGGTGCTTTGCCAAGTCATGTTCAACTAGCTGCGACAAGGTTGCCTATAACAGGAACCCAGGCCGCAACCCAAAAGGTTACTAAAGATGAACTTGGTGATGTAGCTGGAATTGCAGCAACTGCAACAGCCAGTGGTGGAAAATTTGACAAGAAGTTGCCAGGTGAAAAACCTGGTAAACATAAAGGAAAGTATCGCAAGTTTTTACCAGTTATAGGAGGAAAAGGGATACACACGCAAGAGCAGGAGCAAACCGATAAAATTCTGAACAAGCTTATCTCTAAGAACTCCCATGAGATGCTCAATGTTAACAAGGCTGTTAACATGTATAATGTGAAGAAAGATAAGAAGCGAAACAACAGACCGGAGAAGTCTTCAGGAACCCCTGGCCAGTTGAAACCAAGGAAGAACCTTCAGAAGAAGCCATTTAACAAGGGCTCTTCAAAGTCATTTGACAAGGGATCTAAAAAGCCATTTGACAAGGGATCTAAAAGGCCATTTAACAAGGGATCTTCGAACAAAGGCAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

277

Amino Acids

31.09

Weight (kDa)

10.21

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRS1	PF04939	7 - 95	3.2e-30	Ribosome biogenesis regulatory protein (RRS1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	366
AclWI	GGATC	5 cut(s)	206, 219, 769, 793, 817
AcoI	YGGCCR	1 cut(s)	688
AcsI	RAATTY	2 cut(s)	443, 561
AcuI	CTGAAG	2 cut(s)	660, 698
AfiI	CCNNNNNNNGG	2 cut(s)	353, 515
AflIII	ACRYGT	2 cut(s)	247, 624
AgsI	TTSAA	4 cut(s)	286, 326, 697, 744
AjnI	CCWGG	5 cut(s)	202, 360, 460, 472, 685
AluBI	AGCT	4 cut(s)	293, 332, 407, 574
AluI	AGCT	4 cut(s)	293, 332, 407, 574
AlwI	GGATC	5 cut(s)	206, 219, 769, 793, 817
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	3 cut(s)	363, 688, 794
ApeKI	GCWGC	3 cut(s)	293, 332, 416
ApoI	RAATTY	2 cut(s)	443, 561
AspLEI	GCGC	1 cut(s)	15
AsuHPI	GGTGA	2 cut(s)	410, 476
AsuII	TTCGAA	1 cut(s)	815
BalI	TGGCCA	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	740
BbsI	GAAGAC	1 cut(s)	666
BbvI	GCAGC	3 cut(s)	280, 319, 428
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	5 cut(s)	204, 362, 462, 474, 687
BciVI	GTATCC	1 cut(s)	522
BclI	TGATCA	1 cut(s)	145
BfaI	CTAG	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	522
BisI	GCNGC	4 cut(s)	294, 333, 366, 417
BlsI	GCNGC	4 cut(s)	295, 334, 367, 418
Bme1390I	CCNGG	5 cut(s)	204, 362, 462, 474, 687
BmiI	GGNNCC	3 cut(s)	213, 358, 682
BmrFI	CCNGG	5 cut(s)	204, 362, 462, 474, 687
BmsI	GCATC	1 cut(s)	588
BpiI	GAAGAC	1 cut(s)	666
Bpu14I	TTCGAA	1 cut(s)	815
BsaJI	CCNNGG	4 cut(s)	203, 360, 685, 701
BsaWI	WCCGGW	1 cut(s)	664
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 515
Bse1I	ACTGG	4 cut(s)	114, 432, 509, 691
BseBI	CCWGG	5 cut(s)	204, 362, 462, 474, 687
BseDI	CCNNGG	4 cut(s)	203, 360, 685, 701
BseLI	CCNNNNNNNGG	2 cut(s)	353, 515
BseNI	ACTGG	4 cut(s)	114, 432, 509, 691
BseXI	GCAGC	3 cut(s)	280, 319, 428
BshFI	GGCC	3 cut(s)	365, 690, 796
BsiSI	CCGG	1 cut(s)	665
BslI	CCNNNNNNNGG	2 cut(s)	353, 515
BsnI	GGCC	3 cut(s)	365, 690, 796
Bsp119I	TTCGAA	1 cut(s)	815
Bsp1286I	GDGCHC	1 cut(s)	740
Bsp143I	GATC	5 cut(s)	145, 211, 761, 785, 809
BspACI	CCGC	1 cut(s)	366
BspANI	GGCC	3 cut(s)	365, 690, 796
BspLI	GGNNCC	3 cut(s)	213, 358, 682
BspPI	GGATC	5 cut(s)	206, 219, 769, 793, 817
BspQI	GCTCTTC	1 cut(s)	745
BspT104I	TTCGAA	1 cut(s)	815
BsrI	ACTGG	4 cut(s)	114, 432, 509, 691
BssECI	CCNNGG	4 cut(s)	203, 360, 685, 701
BssMI	GATC	5 cut(s)	145, 211, 761, 785, 809
BssT1I	CCWWGG	1 cut(s)	701
Bst2UI	CCWGG	5 cut(s)	204, 362, 462, 474, 687
Bst4CI	ACNGT	2 cut(s)	54, 83
Bst6I	CTCTTC	1 cut(s)	745
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstBI	TTCGAA	1 cut(s)	815
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	582
BstENI	CCTNNNNNAGG	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	5 cut(s)	148, 214, 764, 788, 812
BstMBI	GATC	5 cut(s)	145, 211, 761, 785, 809
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 422
BstNI	CCWGG	5 cut(s)	204, 362, 462, 474, 687
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	5 cut(s)	202, 360, 460, 472, 685
BstV1I	GCAGC	3 cut(s)	280, 319, 428
BstV2I	GAAGAC	1 cut(s)	666
BstX2I	RGATCY	4 cut(s)	211, 761, 785, 809
BstYI	RGATCY	4 cut(s)	211, 761, 785, 809
BsuI	GTATCC	1 cut(s)	522
BsuRI	GGCC	3 cut(s)	365, 690, 796
BtsIMutI	CAGTG	2 cut(s)	121, 439
Cac8I	GCNNGC	1 cut(s)	291
CaiI	CAGNNNCTG	1 cut(s)	422
CfoI	GCGC	1 cut(s)	15
CsiI	ACCWGGT	1 cut(s)	472
CviAII	CATG	4 cut(s)	149, 320, 593, 625
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	5 cut(s)	147, 213, 763, 787, 811
DpnII	GATC	5 cut(s)	145, 211, 761, 785, 809
EaeI	YGGCCR	1 cut(s)	688
Eam1104I	CTCTTC	1 cut(s)	745
EarI	CTCTTC	1 cut(s)	745
Eco130I	CCWWGG	1 cut(s)	701
Eco24I	GRGCYC	1 cut(s)	740
Eco57I	CTGAAG	2 cut(s)	660, 698
EcoNI	CCTNNNNNAGG	1 cut(s)	351
EcoRII	CCWGG	5 cut(s)	202, 360, 460, 472, 685
EcoT14I	CCWWGG	1 cut(s)	701
EcoT38I	GRGCYC	1 cut(s)	740
ErhI	CCWWGG	1 cut(s)	701
FaeI	CATG	4 cut(s)	152, 323, 596, 628
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	4 cut(s)	148, 319, 592, 624
FauNDI	CATATG	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	4 cut(s)	294, 333, 366, 417
FriOI	GRGCYC	1 cut(s)	740
Fsp4HI	GCNGC	4 cut(s)	294, 333, 366, 417
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	4 cut(s)	294, 333, 366, 417
HaeIII	GGCC	3 cut(s)	365, 690, 796
HapII	CCGG	1 cut(s)	665
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	4 cut(s)	152, 323, 596, 628
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HincII	GTYRAC	3 cut(s)	192, 610, 622
HindII	GTYRAC	3 cut(s)	192, 610, 622
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	2 cut(s)	19, 110
HpaI	GTTAAC	2 cut(s)	610, 622
HpaII	CCGG	1 cut(s)	665
HphI	GGTGA	2 cut(s)	410, 476
Hpy166II	GTNNAC	4 cut(s)	192, 479, 610, 622
Hpy188I	TCNGA	2 cut(s)	567, 717
Hpy188III	TCNNGA	1 cut(s)	678
Hpy8I	GTNNAC	4 cut(s)	192, 479, 610, 622
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	722
HpyCH4III	ACNGT	2 cut(s)	54, 83
HpyCH4IV	ACGT	2 cut(s)	130, 247
HpyCH4V	TGCA	5 cut(s)	101, 152, 277, 416, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 422
HpyF3I	CTNAG	1 cut(s)	582
HpySE526I	ACGT	2 cut(s)	130, 247
Hsp92II	CATG	4 cut(s)	152, 323, 596, 628
HspAI	GCGC	1 cut(s)	13
Ksp22I	TGATCA	1 cut(s)	145
KspAI	GTTAAC	2 cut(s)	610, 622
Kzo9I	GATC	5 cut(s)	145, 211, 761, 785, 809
LguI	GCTCTTC	1 cut(s)	745
LmnI	GCTCC	1 cut(s)	547
Lsp1109I	GCAGC	3 cut(s)	280, 319, 428
LweI	GCATC	1 cut(s)	588
MabI	ACCWGGT	1 cut(s)	472
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	2 cut(s)	130, 247
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	5 cut(s)	147, 213, 763, 787, 811
MboI	GATC	5 cut(s)	145, 211, 761, 785, 809
MboII	GAAGA	8 cut(s)	76, 245, 649, 666, 718, 730, 732, 804
MflI	RGATCY	4 cut(s)	211, 761, 785, 809
MhlI	GDGCHC	1 cut(s)	740
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	3 cut(s)	411, 443, 561
MluNI	TGGCCA	1 cut(s)	690
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	5 cut(s)	45, 154, 175, 202, 512
Mox20I	TGGCCA	1 cut(s)	690
MscI	TGGCCA	1 cut(s)	690
MseI	TTAA	4 cut(s)	609, 621, 729, 801
MslI	CAYNNNNRTG	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	690
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	5 cut(s)	204, 362, 462, 474, 687
MvaI	CCWGG	5 cut(s)	204, 362, 462, 474, 687
MwoI	GCNNNNNNNGC	2 cut(s)	413, 422
NdeI	CATATG	1 cut(s)	103
NdeII	GATC	5 cut(s)	145, 211, 761, 785, 809
NlaIII	CATG	4 cut(s)	152, 323, 596, 628
NlaIV	GGNNCC	3 cut(s)	213, 358, 682
NspI	RCATGY	1 cut(s)	628
NspV	TTCGAA	1 cut(s)	815
PciI	ACATGT	1 cut(s)	624
PciSI	GCTCTTC	1 cut(s)	745
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	4 cut(s)	295, 334, 367, 418
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PscI	ACATGT	1 cut(s)	624
Psp6I	CCWGG	5 cut(s)	202, 360, 460, 472, 685
PspGI	CCWGG	5 cut(s)	202, 360, 460, 472, 685
PspN4I	GGNNCC	3 cut(s)	213, 358, 682
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	4 cut(s)	211, 761, 785, 809
RseI	CAYNNNNRTG	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	745
SaqAI	TTAA	4 cut(s)	609, 621, 729, 801
SatI	GCNGC	4 cut(s)	294, 333, 366, 417
Sau3AI	GATC	5 cut(s)	145, 211, 761, 785, 809
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	5 cut(s)	204, 362, 462, 474, 687
SduI	GDGCHC	1 cut(s)	740
SexAI	ACCWGGT	1 cut(s)	472
SfaNI	GCATC	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	3 cut(s)	411, 443, 561
SsiI	CCGC	1 cut(s)	366
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	5 cut(s)	202, 360, 460, 472, 685
StyI	CCWWGG	1 cut(s)	701
TaaI	ACNGT	2 cut(s)	54, 83
TaiI	ACGT	2 cut(s)	133, 250
TaqI	TCGA	1 cut(s)	815
TasI	AATT	3 cut(s)	411, 443, 561
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	4 cut(s)	609, 621, 729, 801
Tru9I	TTAA	4 cut(s)	609, 621, 729, 801
TscAI	CASTG	2 cut(s)	121, 439
TseI	GCWGC	3 cut(s)	293, 332, 416
TspDTI	ATGAA	1 cut(s)	405
TspRI	CASTG	2 cut(s)	121, 439
XagI	CCTNNNNNAGG	1 cut(s)	351
XapI	RAATTY	2 cut(s)	443, 561
XceI	RCATGY	1 cut(s)	628
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.