Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Forward (+)

1914951 .. 1917976

Gene Structure 3026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGAGACCGAAACGACGGCGTTTCAGATCGACTTGGGTAATCTCATGGCTGTTGACCTTCATCACCAATTTCCTTCCAACCCTTCTTCCAGGGAGGATTTAGTGAAGGAATGTATTGCAAAAGGAACGGAGTTAGTTCAAGCTATTGCGAATAATCTATTCAATTTGCCTTCAACTGAAGACATTGAGGGTACCCTTGTGAAGTTGCCTGCTCCAACAACTAGACTGCCCAGAGAGAAGCATATTCCAAAGCCTAAACCTCCTACAAAATGGGAAGTGTTTGCCCAAAAGAAAGGTATCAAGAACCGTAAGAAAGACAAGATTGCGTATGATGAGCCCAGTGAAACTTGGAAACGTCGTTATGGATATGATCGTGCAAATGATGAGGATGATGTACCTATCATTGAGGCAAAGATGACTGATGTGCCAGGGGAGGATCCTTTTGCTAAAAGACGAGAAGCTAAAAAGAATCGTGTTGAAAAGCAAGACAAAAATAGGTTGCAGAACTTGAAGCAAGCTGCAAAAGTTGGTGCTTTGCCAAGTCATGTTCAACTAGCTGCGACAAGGTTGCCTATAACAGGAACCCAGGCTGCACCCCAAAAGGTTACTAAAGATGAACTTGGGAGTGTAGCTGGAATTGCAGCAACTGCAACAGCCAGTGGTGGAAAATTTGACAAAAAATTGCCAGGTGAAAAACCTGGTAAACATAAAGGAAAGTATCGCAAGTTTTTACCAGTTATAGGAGGAAAAGGAATACACACGCAAGAGCAGGAGCAAACTGATAAAATTCTGAACAAGCTAATTTCTAAGAACTCCCATGAGATGCTCAATGTTAACAAGGCTGTTAACATGTATAATGTGAAGAAAGATAAGAAGAGAAACAACAGACCGGAGAAGTCTTCAGGAACCCCTGGCCAGTTGAAAGCAAGGAAAAACCTTACAAAGAAGCCATTTTACAAGGGCTCTTCAAAGTCATTTGACAAGGGATCTAAAAAGCCATTTAACAAGGGATCTTCGAACAAAGGCAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

345

Amino Acids

38.36

Weight (kDa)

9.97

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRS1	PF04939	8 - 170	2.3e-54	Ribosome biogenesis regulatory protein (RRS1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	191
AclWI	GGATC	4 cut(s)	431, 444, 994, 1018
AcoI	YGGCCR	1 cut(s)	913
AcsI	RAATTY	2 cut(s)	668, 786
AcuI	CTGAAG	2 cut(s)	198, 885
AfaI	GTAC	2 cut(s)	193, 396
AfiI	CCNNNNNNNGG	2 cut(s)	578, 740
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	8 cut(s)	140, 163, 174, 479, 511, 551, 922, 969
AjnI	CCWGG	6 cut(s)	89, 427, 585, 685, 697, 910
AluBI	AGCT	6 cut(s)	143, 461, 518, 557, 632, 799
AluI	AGCT	6 cut(s)	143, 461, 518, 557, 632, 799
AlwI	GGATC	4 cut(s)	431, 444, 994, 1018
AlwNI	CAGNNNCTG	1 cut(s)	647
AoxI	GGCC	1 cut(s)	913
ApeKI	GCWGC	4 cut(s)	518, 557, 590, 641
ApoI	RAATTY	2 cut(s)	668, 786
Asp718I	GGTACC	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	56, 701
AsuII	TTCGAA	1 cut(s)	1016
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
BalI	TGGCCA	1 cut(s)	915
BamHI	GGATCC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	2 cut(s)	339, 965
BarI	GAAGNNNNNNTAC	2 cut(s)	938, 970
BbsI	GAAGAC	2 cut(s)	186, 891
BbvI	GCAGC	4 cut(s)	505, 544, 577, 653
BceAI	ACGGC	1 cut(s)	33
BcgI	CGANNNNNNTGC	2 cut(s)	550, 584
BciT130I	CCWGG	6 cut(s)	91, 429, 587, 687, 699, 912
BfaI	CTAG	2 cut(s)	222, 554
BisI	GCNGC	4 cut(s)	519, 558, 591, 642
BlsI	GCNGC	4 cut(s)	520, 559, 592, 643
Bme1390I	CCNGG	6 cut(s)	91, 429, 587, 687, 699, 912
BmiI	GGNNCC	4 cut(s)	193, 438, 583, 907
BmrFI	CCNGG	6 cut(s)	91, 429, 587, 687, 699, 912
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	813
BmuI	ACTGGG	1 cut(s)	333
BpiI	GAAGAC	2 cut(s)	186, 891
Bpu14I	TTCGAA	1 cut(s)	1016
BsaJI	CCNNGG	4 cut(s)	90, 428, 585, 910
BsaWI	WCCGGW	1 cut(s)	889
Bsc4I	CCNNNNNNNGG	2 cut(s)	578, 740
Bse1I	ACTGG	4 cut(s)	339, 657, 734, 916
BseBI	CCWGG	6 cut(s)	91, 429, 587, 687, 699, 912
BseDI	CCNNGG	4 cut(s)	90, 428, 585, 910
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	2 cut(s)	578, 740
BseNI	ACTGG	4 cut(s)	339, 657, 734, 916
BseXI	GCAGC	4 cut(s)	505, 544, 577, 653
BsgI	GTGCAG	1 cut(s)	576
BshFI	GGCC	1 cut(s)	915
BshNI	GGYRCC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	890
BslI	CCNNNNNNNGG	2 cut(s)	578, 740
BsnI	GGCC	1 cut(s)	915
Bsp119I	TTCGAA	1 cut(s)	1016
Bsp1286I	GDGCHC	2 cut(s)	339, 965
Bsp143I	GATC	5 cut(s)	27, 370, 436, 986, 1010
BspANI	GGCC	1 cut(s)	915
BspLI	GGNNCC	4 cut(s)	193, 438, 583, 907
BspPI	GGATC	4 cut(s)	431, 444, 994, 1018
BspQI	GCTCTTC	1 cut(s)	970
BspT104I	TTCGAA	1 cut(s)	1016
BspT107I	GGYRCC	1 cut(s)	191
BsrI	ACTGG	4 cut(s)	339, 657, 734, 916
BssECI	CCNNGG	4 cut(s)	90, 428, 585, 910
BssMI	GATC	5 cut(s)	27, 370, 436, 986, 1010
Bst2UI	CCWGG	6 cut(s)	91, 429, 587, 687, 699, 912
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	2 cut(s)	869, 970
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBI	TTCGAA	1 cut(s)	1016
BstC8I	GCNNGC	2 cut(s)	210, 516
BstDEI	CTNAG	1 cut(s)	807
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	5 cut(s)	30, 373, 439, 989, 1013
BstMBI	GATC	5 cut(s)	27, 370, 436, 986, 1010
BstMWI	GCNNNNNNNGC	2 cut(s)	638, 647
BstNI	CCWGG	6 cut(s)	91, 429, 587, 687, 699, 912
BstNSI	RCATGY	1 cut(s)	853
BstSCI	CCNGG	6 cut(s)	89, 427, 585, 685, 697, 910
BstV1I	GCAGC	4 cut(s)	505, 544, 577, 653
BstV2I	GAAGAC	2 cut(s)	186, 891
BstX2I	RGATCY	3 cut(s)	436, 986, 1010
BstYI	RGATCY	3 cut(s)	436, 986, 1010
BsuRI	GGCC	1 cut(s)	915
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	346, 664
Cac8I	GCNNGC	2 cut(s)	210, 516
CaiI	CAGNNNCTG	1 cut(s)	647
CsiI	ACCWGGT	1 cut(s)	697
Csp6I	GTAC	2 cut(s)	192, 395
CviAII	CATG	4 cut(s)	46, 545, 818, 850
CviQI	GTAC	2 cut(s)	192, 395
DdeI	CTNAG	1 cut(s)	807
DpnI	GATC	5 cut(s)	29, 372, 438, 988, 1012
DpnII	GATC	5 cut(s)	27, 370, 436, 986, 1010
EaeI	YGGCCR	1 cut(s)	913
Eam1104I	CTCTTC	2 cut(s)	869, 970
EarI	CTCTTC	2 cut(s)	869, 970
Eco24I	GRGCYC	2 cut(s)	339, 965
Eco57I	CTGAAG	2 cut(s)	198, 885
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoRII	CCWGG	6 cut(s)	89, 427, 585, 685, 697, 910
EcoT38I	GRGCYC	2 cut(s)	339, 965
FaeI	CATG	4 cut(s)	49, 548, 821, 853
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FatI	CATG	4 cut(s)	45, 544, 817, 849
Fnu4HI	GCNGC	4 cut(s)	519, 558, 591, 642
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	2 cut(s)	339, 965
Fsp4HI	GCNGC	4 cut(s)	519, 558, 591, 642
FspBI	CTAG	2 cut(s)	222, 554
GluI	GCNGC	4 cut(s)	519, 558, 591, 642
HaeIII	GGCC	1 cut(s)	915
HapII	CCGG	1 cut(s)	890
Hin1II	CATG	4 cut(s)	49, 548, 821, 853
HincII	GTYRAC	3 cut(s)	55, 835, 847
HindII	GTYRAC	3 cut(s)	55, 835, 847
HinfI	GANTC	1 cut(s)	469
HpaI	GTTAAC	2 cut(s)	835, 847
HpaII	CCGG	1 cut(s)	890
HphI	GGTGA	2 cut(s)	56, 701
Hpy166II	GTNNAC	4 cut(s)	55, 704, 835, 847
Hpy188I	TCNGA	2 cut(s)	27, 792
Hpy188III	TCNNGA	2 cut(s)	301, 903
Hpy8I	GTNNAC	4 cut(s)	55, 704, 835, 847
Hpy99I	CGWCG	2 cut(s)	19, 360
HpyAV	CCTTC	5 cut(s)	68, 84, 93, 100, 180
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	7 cut(s)	119, 377, 502, 521, 593, 641, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	638, 647
HpyF3I	CTNAG	1 cut(s)	807
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	4 cut(s)	49, 548, 821, 853
KpnI	GGTACC	1 cut(s)	195
KspAI	GTTAAC	2 cut(s)	835, 847
Kzo9I	GATC	5 cut(s)	27, 370, 436, 986, 1010
LguI	GCTCTTC	1 cut(s)	970
LmnI	GCTCC	2 cut(s)	217, 772
Lsp1109I	GCAGC	4 cut(s)	505, 544, 577, 653
LweI	GCATC	1 cut(s)	813
MabI	ACCWGGT	1 cut(s)	697
MaeI	CTAG	2 cut(s)	222, 554
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	5 cut(s)	29, 372, 438, 988, 1012
MboI	GATC	5 cut(s)	27, 370, 436, 986, 1010
MboII	GAAGA	7 cut(s)	78, 191, 874, 886, 891, 957, 1005
MflI	RGATCY	3 cut(s)	436, 986, 1010
MhlI	GDGCHC	2 cut(s)	339, 965
MlsI	TGGCCA	1 cut(s)	915
MluCI	AATT	7 cut(s)	68, 163, 636, 668, 680, 786, 801
MluNI	TGGCCA	1 cut(s)	915
MmeI	TCCRAC	2 cut(s)	102, 239
MnlI	CCTC	7 cut(s)	88, 181, 270, 379, 400, 427, 737
Mox20I	TGGCCA	1 cut(s)	915
MscI	TGGCCA	1 cut(s)	915
MseI	TTAA	3 cut(s)	834, 846, 1002
Msp20I	TGGCCA	1 cut(s)	915
MspI	CCGG	1 cut(s)	890
MspR9I	CCNGG	6 cut(s)	91, 429, 587, 687, 699, 912
MvaI	CCWGG	6 cut(s)	91, 429, 587, 687, 699, 912
MwoI	GCNNNNNNNGC	2 cut(s)	638, 647
NdeII	GATC	5 cut(s)	27, 370, 436, 986, 1010
NlaIII	CATG	4 cut(s)	49, 548, 821, 853
NlaIV	GGNNCC	4 cut(s)	193, 438, 583, 907
NspI	RCATGY	1 cut(s)	853
NspV	TTCGAA	1 cut(s)	1016
PciI	ACATGT	1 cut(s)	849
PciSI	GCTCTTC	1 cut(s)	970
PfeI	GAWTC	1 cut(s)	469
PkrI	GCNGC	4 cut(s)	520, 559, 592, 643
PscI	ACATGT	1 cut(s)	849
Psp6I	CCWGG	6 cut(s)	89, 427, 585, 685, 697, 910
PspGI	CCWGG	6 cut(s)	89, 427, 585, 685, 697, 910
PspN4I	GGNNCC	4 cut(s)	193, 438, 583, 907
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	3 cut(s)	436, 986, 1010
RsaI	GTAC	2 cut(s)	193, 396
RsaNI	GTAC	2 cut(s)	192, 395
SapI	GCTCTTC	1 cut(s)	970
SaqAI	TTAA	3 cut(s)	834, 846, 1002
SatI	GCNGC	4 cut(s)	519, 558, 591, 642
Sau3AI	GATC	5 cut(s)	27, 370, 436, 986, 1010
ScrFI	CCNGG	6 cut(s)	91, 429, 587, 687, 699, 912
SduI	GDGCHC	2 cut(s)	339, 965
SexAI	ACCWGGT	1 cut(s)	697
SfaNI	GCATC	1 cut(s)	813
SfuI	TTCGAA	1 cut(s)	1016
Sse9I	AATT	7 cut(s)	68, 163, 636, 668, 680, 786, 801
SspMI	CTAG	2 cut(s)	222, 554
StyD4I	CCNGG	6 cut(s)	89, 427, 585, 685, 697, 910
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	2 cut(s)	30, 1016
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	7 cut(s)	68, 163, 636, 668, 680, 786, 801
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	3 cut(s)	834, 846, 1002
Tru9I	TTAA	3 cut(s)	834, 846, 1002
TscAI	CASTG	2 cut(s)	346, 664
TseI	GCWGC	4 cut(s)	518, 557, 590, 641
TspDTI	ATGAA	2 cut(s)	50, 630
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	2 cut(s)	346, 664
XagI	CCTNNNNNAGG	1 cut(s)	576
XapI	RAATTY	2 cut(s)	668, 786
XceI	RCATGY	1 cut(s)	853
XspI	CTAG	2 cut(s)	222, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.