Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Forward (+)

57239810 .. 57240515

Gene Structure 706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0486300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTACACCCGTGTTGGTTCAGATGTTGCTCTCTTCAAGACAATAAGGATAGCCTCCGGCGAATATCGAAGGACTGTAAGGTATCCAGAAGACAGGTATGATCGGGTATGGTACTCTGGATATGGTATAAATGCTTACCAGTGGATGATCCTCCGGCGGTTGTATTGCAAAATGCGACCACCGCGCCCGGCCGTAACACTTCGGAATATTATCAATTCTTTTCCTACCTACAACAAGACTATGACGTTCCTGTGTACATGCATTACCACCTACTTCTCCGAAGTTCTTCGATTCACTTCTCCCAGCTACAAACGATCCTTTCGGATTTATGTGGACAACAATCCTTATTCCGAAGCAATAATTCCGCCTTTCGGTGGTGTAGAGGAGGTGGCTATTACCAACATCACTGCTTCTTTAAAAACAGGCTTCTATCTCATGCCAACATCAGATGCCACTCTCCCTGTTCTTATCAATGCCTTTGAAGTTTATACCGTCAGTGATCCGTTGTCATCTGGAACCCATATAGCAGATGGTACGTACCTACTCACCTACTTAATTGAACTGAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

190

Amino Acids

21.88

Weight (kDa)

9.08

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	2 - 165	7.3e-13	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	184
AciI	CCGC	3 cut(s)	157, 182, 365
AclWI	GGATC	3 cut(s)	142, 309, 494
AcoI	YGGCCR	1 cut(s)	189
AfaI	GTAC	5 cut(s)	5, 113, 256, 535, 539
AfiI	CCNNNNNNNGG	2 cut(s)	371, 374
AgsI	TTSAA	3 cut(s)	37, 482, 560
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
AlwI	GGATC	3 cut(s)	142, 309, 494
AoxI	GGCC	1 cut(s)	189
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	186
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	538
BbsI	GAAGAC	1 cut(s)	96
BccI	CCATC	1 cut(s)	524
BceAI	ACGGC	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	188
BfuI	GTATCC	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	439
BpiI	GAAGAC	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	188
BsaAI	YACGTR	1 cut(s)	537
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 374
Bse1I	ACTGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	371, 374
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	398
BseX3I	CGGCCG	1 cut(s)	189
BseYI	CCCAGC	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	57, 154, 188
BslI	CCNNNNNNNGG	2 cut(s)	371, 374
BsnI	GGCC	1 cut(s)	191
Bsp1407I	TGTACA	2 cut(s)	3, 254
Bsp143I	GATC	4 cut(s)	100, 147, 314, 499
BspACI	CCGC	3 cut(s)	157, 182, 365
BspANI	GGCC	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	517
BspPI	GGATC	3 cut(s)	142, 309, 494
BsrGI	TGTACA	2 cut(s)	3, 254
BsrI	ACTGG	1 cut(s)	139
BssMI	GATC	4 cut(s)	100, 147, 314, 499
Bst4CI	ACNGT	2 cut(s)	76, 493
Bst6I	CTCTTC	1 cut(s)	38
BstAUI	TGTACA	2 cut(s)	3, 254
BstBAI	YACGTR	1 cut(s)	537
BstF5I	GGATG	1 cut(s)	150
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	4 cut(s)	103, 150, 317, 502
BstMBI	GATC	4 cut(s)	100, 147, 314, 499
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	186
BstSNI	TACGTA	1 cut(s)	537
BstUI	CGCG	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	96
BstZI	CGGCCG	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	3 cut(s)	146, 405, 502
CfoI	GCGC	1 cut(s)	186
Csp6I	GTAC	5 cut(s)	4, 112, 255, 534, 538
CviAII	CATG	2 cut(s)	258, 436
CviJI	RGCY	5 cut(s)	53, 191, 306, 392, 426
CviKI_1	RGCY	5 cut(s)	53, 191, 306, 392, 426
CviQI	GTAC	5 cut(s)	4, 112, 255, 534, 538
DpnI	GATC	4 cut(s)	102, 149, 316, 501
DpnII	GATC	4 cut(s)	100, 147, 314, 499
DraI	TTTAAA	1 cut(s)	417
EaeI	YGGCCR	1 cut(s)	189
EagI	CGGCCG	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	354
EclXI	CGGCCG	1 cut(s)	189
Eco105I	TACGTA	1 cut(s)	537
Eco52I	CGGCCG	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	263
FaeI	CATG	2 cut(s)	261, 439
FatI	CATG	2 cut(s)	257, 435
FokI	GGATG	1 cut(s)	157
GlaI	GCGC	1 cut(s)	185
GsaI	CCCAGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	3 cut(s)	57, 154, 188
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	261, 439
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	291
HpaII	CCGG	3 cut(s)	57, 154, 188
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	3 cut(s)	6, 255, 334
Hpy188I	TCNGA	6 cut(s)	22, 204, 280, 324, 352, 448
Hpy188III	TCNNGA	4 cut(s)	37, 86, 117, 513
Hpy8I	GTNNAC	3 cut(s)	6, 255, 334
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	2 cut(s)	76, 493
HpyCH4IV	ACGT	2 cut(s)	245, 536
HpyCH4V	TGCA	2 cut(s)	168, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpySE526I	ACGT	2 cut(s)	245, 536
Hsp92II	CATG	2 cut(s)	261, 439
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	100, 147, 314, 499
LweI	GCATC	1 cut(s)	439
MaeII	ACGT	2 cut(s)	245, 536
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	4 cut(s)	102, 149, 316, 501
MboI	GATC	4 cut(s)	100, 147, 314, 499
MboII	GAAGA	3 cut(s)	25, 101, 278
MluCI	AATT	3 cut(s)	214, 360, 555
MnlI	CCTC	4 cut(s)	64, 161, 376, 379
Mph1103I	ATGCAT	1 cut(s)	263
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	2 cut(s)	416, 554
MspI	CCGG	3 cut(s)	57, 154, 188
MspR9I	CCNGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	4 cut(s)	100, 147, 314, 499
NlaIII	CATG	2 cut(s)	261, 439
NlaIV	GGNNCC	1 cut(s)	517
NsiI	ATGCAT	1 cut(s)	263
NspI	RCATGY	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	291
Ppu21I	YACGTR	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	517
RsaI	GTAC	5 cut(s)	5, 113, 256, 535, 539
RsaNI	GTAC	5 cut(s)	4, 112, 255, 534, 538
SaqAI	TTAA	2 cut(s)	416, 554
Sau3AI	GATC	4 cut(s)	100, 147, 314, 499
ScrFI	CCNGG	1 cut(s)	188
SfaNI	GCATC	1 cut(s)	439
SnaBI	TACGTA	1 cut(s)	537
Sse9I	AATT	3 cut(s)	214, 360, 555
SsiI	CCGC	3 cut(s)	157, 182, 365
SspI	AATATT	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	76, 493
TaiI	ACGT	2 cut(s)	248, 539
TaqI	TCGA	2 cut(s)	67, 289
TasI	AATT	3 cut(s)	214, 360, 555
TatI	WGTACW	2 cut(s)	3, 254
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	2 cut(s)	416, 554
Tru9I	TTAA	2 cut(s)	416, 554
TscAI	CASTG	3 cut(s)	146, 412, 502
TspGWI	ACGGA	1 cut(s)	492
TspRI	CASTG	3 cut(s)	146, 412, 502
XceI	RCATGY	1 cut(s)	261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.