Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Forward (+)

13606270 .. 13608956

Gene Structure 2687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1174800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAGACCCCGCAGCAGCAGATTCAAGTCGATCTGGGTAATCTCATGGCCTTCGACCCTCATCACAGCTTCCCCTCCATCCCCTCCTCCAGGGAGGAATTAGTGAAGGAATGTATAACGAAAGGGACCGAGTTGGTTCAAGCTATTGCGAATAGCCTTTTCAACTTACCTTCAACTGAAGACATAGACGGTCCCATTGTGCAGTTGCCGCGTCCCGAAACTAAACTGCCTAGACAGAAGCATCTGCCAGTGCCTAAACCTCCAACAAAATGGGAAACTTTTGCCAAAACAAAAGGTATCAAGAACCGTAAAAGAGACAAGATTGCATATGATGAGCCGACTGAAACTTGGAAACGTCGCTTTGGATATGATCGTGCAAATGATGAGAATAGTGTACCTATCATTGAGGCGAAGGAGAATGATGTGCCAGGGGAGGATCCTTTTGCTAAAAGGCGAGAGGATAAGAAGAAAAGAGTTGAAAAGCAAGATAAGAATAGGTTGCAGAACTTGAAGCAAGCTGCGAAAGTCGGTGCTTTACCAAGCCATGTTCAGCTAGCTGCCACACGGTTGCCCATAACGGGAACCCAGTCTGCAGCCAAGAAGTTTTCTAAAGATGAACTGGGTAATGTAGCTGGAATAGCAGCAACCGCAACGGCCAGCGGTGGTAAGTTTGACAAGAAATTGCCTGGTGAAAAGCCTCCTAAACATAAAGGAAAGTTCCGCAAGTTTTTGCCGGTTGTAGAAGGAAAAGGAAAACAATCACAAGAGAAGGAGCAAACAGATAAAGTACTGAACAAGCTAATCTCCAAGAATTCCCATGAGATATTTAACGTCGACAAGGCTGTTAACATGTACAATGTCAAGAAGGACAAGAAGCGAAAGAACAAGCCGGGGATGTCCTCGAGCACGTTAAAACCGAAGAAGAACATCCAGAAGAAGCCATTAAAGAAGGGATCTTCATCGAAAGGAAAGGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

327

Amino Acids

36.51

Weight (kDa)

10.0

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRS1	PF04939	8 - 170	1.6e-53	Ribosome biogenesis regulatory protein (RRS1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	834
AccII	CGCG	1 cut(s)	211
AciI	CCGC	5 cut(s)	11, 209, 648, 660, 721
AclWI	GGATC	3 cut(s)	431, 444, 961
AcoI	YGGCCR	1 cut(s)	654
AcsI	RAATTY	1 cut(s)	811
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	3 cut(s)	396, 789, 854
AfiI	CCNNNNNNNGG	2 cut(s)	90, 578
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	6 cut(s)	26, 140, 163, 174, 479, 511
AjnI	CCWGG	3 cut(s)	89, 427, 685
AluBI	AGCT	7 cut(s)	69, 143, 518, 553, 557, 632, 799
AluI	AGCT	7 cut(s)	69, 143, 518, 553, 557, 632, 799
Alw21I	GWGCWC	1 cut(s)	908
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	3 cut(s)	431, 444, 961
Ama87I	CYCGRG	1 cut(s)	901
AoxI	GGCC	2 cut(s)	48, 654
ApeKI	GCWGC	6 cut(s)	13, 16, 518, 557, 593, 641
ApoI	RAATTY	1 cut(s)	811
AspS9I	GGNCC	2 cut(s)	126, 191
AsuC2I	CCSGG	1 cut(s)	891
AsuHPI	GGTGA	1 cut(s)	701
AsuNHI	GCTAGC	1 cut(s)	553
AvaI	CYCGRG	1 cut(s)	901
AvaII	GGWCC	2 cut(s)	126, 191
BamHI	GGATCC	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	908
BbvI	GCAGC	6 cut(s)	25, 28, 505, 544, 605, 653
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	669
BciT130I	CCWGG	3 cut(s)	91, 429, 687
BcnI	CCSGG	1 cut(s)	891
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	2 cut(s)	231, 554
BfmI	CTRYAG	1 cut(s)	591
BisI	GCNGC	7 cut(s)	14, 17, 209, 519, 558, 594, 642
BlsI	GCNGC	7 cut(s)	15, 18, 210, 520, 559, 595, 643
BmcAI	AGTACT	1 cut(s)	789
Bme1390I	CCNGG	4 cut(s)	91, 429, 687, 891
Bme18I	GGWCC	2 cut(s)	126, 191
BmeT110I	CYCGRG	1 cut(s)	901
BmgT120I	GGNCC	2 cut(s)	126, 191
BmiI	GGNNCC	4 cut(s)	127, 193, 438, 583
BmrFI	CCNGG	4 cut(s)	91, 429, 687, 891
BmrI	ACTGGG	2 cut(s)	580, 629
BmsI	GCATC	1 cut(s)	250
BmtI	GCTAGC	1 cut(s)	557
BmuI	ACTGGG	2 cut(s)	580, 629
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	891
BsaBI	GATNNNNATC	1 cut(s)	958
BsaJI	CCNNGG	3 cut(s)	90, 428, 890
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 578
Bse118I	RCCGGY	1 cut(s)	733
Bse1I	ACTGG	3 cut(s)	248, 586, 624
Bse8I	GATNNNNATC	1 cut(s)	958
BseBI	CCWGG	3 cut(s)	91, 429, 687
BseDI	CCNNGG	3 cut(s)	90, 428, 890
BseGI	GGATG	3 cut(s)	78, 900, 927
BseJI	GATNNNNATC	1 cut(s)	958
BseLI	CCNNNNNNNGG	2 cut(s)	90, 578
BseNI	ACTGG	3 cut(s)	248, 586, 624
BseRI	GAGGAG	1 cut(s)	76
BseXI	GCAGC	6 cut(s)	25, 28, 505, 544, 605, 653
BsgI	GTGCAG	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	50, 656
BsiHKAI	GWGCWC	1 cut(s)	908
BsiHKCI	CYCGRG	1 cut(s)	901
BsiSI	CCGG	2 cut(s)	734, 890
BslFI	GGGAC	3 cut(s)	139, 177, 198
BslI	CCNNNNNNNGG	2 cut(s)	90, 578
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	3 cut(s)	139, 177, 198
BsnI	GGCC	2 cut(s)	50, 656
BsoBI	CYCGRG	1 cut(s)	901
Bsp1286I	GDGCHC	1 cut(s)	908
Bsp1407I	TGTACA	1 cut(s)	852
Bsp143I	GATC	4 cut(s)	31, 370, 436, 953
BspACI	CCGC	5 cut(s)	11, 209, 648, 660, 721
BspANI	GGCC	2 cut(s)	50, 656
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	4 cut(s)	127, 193, 438, 583
BspMAI	CTGCAG	1 cut(s)	595
BspOI	GCTAGC	1 cut(s)	557
BspPI	GGATC	3 cut(s)	431, 444, 961
BsrFI	RCCGGY	1 cut(s)	733
BsrGI	TGTACA	1 cut(s)	852
BsrI	ACTGG	3 cut(s)	248, 586, 624
BssAI	RCCGGY	1 cut(s)	733
BssECI	CCNNGG	3 cut(s)	90, 428, 890
BssMI	GATC	4 cut(s)	31, 370, 436, 953
Bst2UI	CCWGG	3 cut(s)	91, 429, 687
Bst4CI	ACNGT	3 cut(s)	191, 308, 567
BstAUI	TGTACA	1 cut(s)	852
BstC8I	GCNNGC	3 cut(s)	516, 555, 658
BstENI	CCTNNNNNAGG	1 cut(s)	88
BstF5I	GGATG	3 cut(s)	78, 900, 927
BstFNI	CGCG	1 cut(s)	211
BstKTI	GATC	4 cut(s)	34, 373, 439, 956
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	4 cut(s)	31, 370, 436, 953
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 638, 647
BstNI	CCWGG	3 cut(s)	91, 429, 687
BstNSI	RCATGY	1 cut(s)	853
BstSCI	CCNGG	4 cut(s)	89, 427, 685, 889
BstSFI	CTRYAG	1 cut(s)	591
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	6 cut(s)	25, 28, 505, 544, 605, 653
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	436, 953
BstXI	CCANNNNNNTGG	1 cut(s)	270
BstYI	RGATCY	2 cut(s)	436, 953
BsuRI	GGCC	2 cut(s)	50, 656
BtsCI	GGATG	3 cut(s)	78, 900, 927
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	516, 555, 658
Cfr10I	RCCGGY	1 cut(s)	733
Cfr13I	GGNCC	2 cut(s)	126, 191
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	3 cut(s)	395, 788, 853
CviAII	CATG	4 cut(s)	46, 545, 818, 850
CviQI	GTAC	3 cut(s)	395, 788, 853
DpnI	GATC	4 cut(s)	33, 372, 438, 955
DpnII	GATC	4 cut(s)	31, 370, 436, 953
EaeI	YGGCCR	1 cut(s)	654
Eco47I	GGWCC	2 cut(s)	126, 191
Eco57I	CTGAAG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	901
EcoNI	CCTNNNNNAGG	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	3 cut(s)	89, 427, 685
FaeI	CATG	4 cut(s)	49, 548, 821, 853
FaqI	GGGAC	3 cut(s)	139, 177, 198
FatI	CATG	4 cut(s)	45, 544, 817, 849
FauI	CCCGC	1 cut(s)	18
FauNDI	CATATG	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	834
Fnu4HI	GCNGC	7 cut(s)	14, 17, 209, 519, 558, 594, 642
FokI	GGATG	3 cut(s)	65, 907, 914
Fsp4HI	GCNGC	7 cut(s)	14, 17, 209, 519, 558, 594, 642
FspBI	CTAG	2 cut(s)	231, 554
GluI	GCNGC	7 cut(s)	14, 17, 209, 519, 558, 594, 642
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	2 cut(s)	50, 656
HapII	CCGG	2 cut(s)	734, 890
HgaI	GACGC	1 cut(s)	200
Hin1II	CATG	4 cut(s)	49, 548, 821, 853
HincII	GTYRAC	2 cut(s)	835, 847
HindII	GTYRAC	2 cut(s)	835, 847
HinfI	GANTC	1 cut(s)	22
HpaI	GTTAAC	1 cut(s)	847
HpaII	CCGG	2 cut(s)	734, 890
HphI	GGTGA	1 cut(s)	701
Hpy166II	GTNNAC	3 cut(s)	395, 835, 847
Hpy188III	TCNNGA	4 cut(s)	215, 301, 862, 931
Hpy8I	GTNNAC	3 cut(s)	395, 835, 847
Hpy99I	CGWCG	2 cut(s)	360, 836
HpyAV	CCTTC	8 cut(s)	61, 100, 180, 406, 737, 763, 859, 943
HpyCH4III	ACNGT	3 cut(s)	191, 308, 567
HpyCH4IV	ACGT	3 cut(s)	355, 831, 908
HpyCH4V	TGCA	5 cut(s)	202, 326, 377, 502, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 638, 647
HpySE526I	ACGT	3 cut(s)	355, 831, 908
Hsp92II	CATG	4 cut(s)	49, 548, 821, 853
KspAI	GTTAAC	1 cut(s)	847
Kzo9I	GATC	4 cut(s)	31, 370, 436, 953
LmnI	GCTCC	1 cut(s)	772
Lsp1109I	GCAGC	6 cut(s)	25, 28, 505, 544, 605, 653
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	2 cut(s)	231, 554
MaeII	ACGT	3 cut(s)	355, 831, 908
MalI	GATC	4 cut(s)	33, 372, 438, 955
MboI	GATC	4 cut(s)	31, 370, 436, 953
MboII	GAAGA	6 cut(s)	191, 478, 931, 934, 946, 948
MflI	RGATCY	2 cut(s)	436, 953
MhlI	GDGCHC	1 cut(s)	908
MluCI	AATT	3 cut(s)	98, 680, 811
MmeI	TCCRAC	1 cut(s)	287
MseI	TTAA	4 cut(s)	828, 846, 911, 944
MspA1I	CMGCKG	1 cut(s)	660
MspI	CCGG	2 cut(s)	734, 890
MspR9I	CCNGG	4 cut(s)	91, 429, 687, 891
MvaI	CCWGG	3 cut(s)	91, 429, 687
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	3 cut(s)	208, 638, 647
NciI	CCSGG	1 cut(s)	891
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	4 cut(s)	31, 370, 436, 953
NheI	GCTAGC	1 cut(s)	553
NlaIII	CATG	4 cut(s)	49, 548, 821, 853
NlaIV	GGNNCC	4 cut(s)	127, 193, 438, 583
NspI	RCATGY	1 cut(s)	853
PaeR7I	CTCGAG	1 cut(s)	901
PciI	ACATGT	1 cut(s)	849
PcsI	WCGNNNNNNNCGW	1 cut(s)	914
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	7 cut(s)	15, 18, 210, 520, 559, 595, 643
PscI	ACATGT	1 cut(s)	849
Psp6I	CCWGG	3 cut(s)	89, 427, 685
PspGI	CCWGG	3 cut(s)	89, 427, 685
PspN4I	GGNNCC	4 cut(s)	127, 193, 438, 583
PspPI	GGNCC	2 cut(s)	126, 191
PspXI	VCTCGAGB	1 cut(s)	901
PstI	CTGCAG	1 cut(s)	595
PsuI	RGATCY	2 cut(s)	436, 953
RsaI	GTAC	3 cut(s)	396, 789, 854
RsaNI	GTAC	3 cut(s)	395, 788, 853
SalI	GTCGAC	1 cut(s)	833
SaqAI	TTAA	4 cut(s)	828, 846, 911, 944
SatI	GCNGC	7 cut(s)	14, 17, 209, 519, 558, 594, 642
Sau3AI	GATC	4 cut(s)	31, 370, 436, 953
Sau96I	GGNCC	2 cut(s)	126, 191
ScaI	AGTACT	1 cut(s)	789
ScrFI	CCNGG	4 cut(s)	91, 429, 687, 891
SduI	GDGCHC	1 cut(s)	908
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	591
Sfr274I	CTCGAG	1 cut(s)	901
SinI	GGWCC	2 cut(s)	126, 191
SlaI	CTCGAG	1 cut(s)	901
SmlI	CTYRAG	1 cut(s)	901
SmoI	CTYRAG	1 cut(s)	901
Sse9I	AATT	3 cut(s)	98, 680, 811
SsiI	CCGC	5 cut(s)	11, 209, 648, 660, 721
SspMI	CTAG	2 cut(s)	231, 554
StyD4I	CCNGG	4 cut(s)	89, 427, 685, 889
TaaI	ACNGT	3 cut(s)	191, 308, 567
TaiI	ACGT	3 cut(s)	358, 834, 911
TaqI	TCGA	5 cut(s)	30, 54, 834, 902, 962
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	3 cut(s)	98, 680, 811
TatI	WGTACW	2 cut(s)	787, 852
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	4 cut(s)	828, 846, 911, 944
Tru9I	TTAA	4 cut(s)	828, 846, 911, 944
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	6 cut(s)	13, 16, 518, 557, 593, 641
TspDTI	ATGAA	2 cut(s)	630, 948
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	2 cut(s)	126, 191
XagI	CCTNNNNNAGG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	811
XceI	RCATGY	1 cut(s)	853
XhoI	CTCGAG	1 cut(s)	901
XmiI	GTMKAC	1 cut(s)	834
XspI	CTAG	2 cut(s)	231, 554
ZrmI	AGTACT	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.